RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 TIGD5Q53EQ6 642 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 IER5Q5VY09 327 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 PTCRAQ6ISU1 281 aaPredicted RBP9.64□□□□□ -0.87
USP28-203ENST00000537490 POTEBQ6S5H4 581 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 MTHFD1LQ6UB35 978 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 ABHD15Q6UXT9 468 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 Q6ZUG5 572 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 PLA2G4DQ86XP0 818 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 TEX2Q8IWB9 1127 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 FAM178BQ8IXR5 827 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 CRIPAKQ8N1N5 446 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 ZNF713Q8N859 430 aaPredicted RBP9.64□□□□□ -0.87
USP28-203ENST00000537490 CRYGNQ8WXF5 182 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 KCNB2Q92953 911 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 LRFN3Q9BTN0 628 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 CELF4Q9BZC1 486 aaKnown RBP9.64□□□□□ -0.87
USP28-203ENST00000537490 NSUN3Q9H649 340 aaKnown RBP9.64□□□□□ -0.87
USP28-203ENST00000537490 PADI3Q9ULW8 664 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 TRPV2Q9Y5S1 764 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 SQORQ9Y6N5 450 aa9.64□□□□□ -0.87
USP28-203ENST00000537490 SIP14410 1827 aa9.63□□□□□ -0.87
USP28-203ENST00000537490 ADGRA3Q8IWK6 1321 aa9.63□□□□□ -0.87
USP28-203ENST00000537490 IGLV3-22A0A075B6J6 115 aa9.63□□□□□ -0.87
USP28-203ENST00000537490 SMIM35A0A1B0GVV1 85 aa9.63□□□□□ -0.87
USP28-203ENST00000537490 HBP1O60381 514 aa9.63□□□□□ -0.87
USP28-203ENST00000537490 RPLP2P05387 115 aaKnown RBP9.63□□□□□ -0.87
USP28-203ENST00000537490 CYP3A4P08684 503 aa9.63□□□□□ -0.87
USP28-203ENST00000537490 HMGB1P09429 215 aaKnown RBP9.63□□□□□ -0.87
USP28-203ENST00000537490 SCG2P13521 617 aa9.63□□□□□ -0.87
USP28-203ENST00000537490 ATP4AP20648 1035 aa9.63□□□□□ -0.87
USP28-203ENST00000537490 KLRC1P26715 233 aa9.63□□□□□ -0.87
USP28-203ENST00000537490 METAP2P50579 478 aaKnown RBP eCLIP9.63□□□□□ -0.87
USP28-203ENST00000537490 RCAN1P53805 252 aa9.63□□□□□ -0.87
USP28-203ENST00000537490 BTG3Q14201 252 aaPredicted RBP9.63□□□□□ -0.87
USP28-203ENST00000537490 COL19A1Q14993 1142 aa9.63□□□□□ -0.87
USP28-203ENST00000537490 PKN1Q16512 942 aa9.63□□□□□ -0.87
USP28-203ENST00000537490 EP400NLQ6ZTU2 488 aa9.63□□□□□ -0.87
USP28-203ENST00000537490 NIPA1Q7RTP0 329 aa9.63□□□□□ -0.87
USP28-203ENST00000537490 CCDC60Q8IWA6 550 aaPredicted RBP9.63□□□□□ -0.87
USP28-203ENST00000537490 NME8Q8N427 588 aa9.63□□□□□ -0.87
USP28-203ENST00000537490 TNPO1Q92973 898 aaKnown RBP9.63□□□□□ -0.87
USP28-203ENST00000537490 CLP1Q92989 425 aaKnown RBP9.63□□□□□ -0.87
USP28-203ENST00000537490 PABPC5Q96DU9 382 aaKnown RBP9.63□□□□□ -0.87
USP28-203ENST00000537490 GLT8D2Q9H1C3 349 aa9.63□□□□□ -0.87
USP28-203ENST00000537490 TMX1Q9H3N1 280 aa9.63□□□□□ -0.87
USP28-203ENST00000537490 CDHR5Q9HBB8 845 aa9.63□□□□□ -0.87
USP28-203ENST00000537490 C11orf16Q9NQ32 467 aa9.63□□□□□ -0.87
USP28-203ENST00000537490 SNX14Q9Y5W7 946 aa9.63□□□□□ -0.87
USP28-203ENST00000537490 COL4A6Q14031 1691 aa9.63□□□□□ -0.87
USP28-203ENST00000537490 IGSF9BQ9UPX0 1349 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 KDM3AQ9Y4C1 1321 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 MYO7AQ13402 2215 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 ESYT2A0FGR8 921 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 PI4K2BG5E9Z4 385 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 M0QZ92 97 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 BACH1O14867 736 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 PPFIA3O75145 1194 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 HSPA4P34932 840 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 LTBRP36941 435 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 GATMP50440 423 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 SLC26A2P50443 739 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 FGD1P98174 961 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 KRT76Q01546 638 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 PAK2Q13177 524 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 CAMK1Q14012 370 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 TMEM266Q2M3C6 531 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 FAM160B1Q5W0V3 765 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 SWSAP1Q6NVH7 229 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 PDXDC2PQ6P474 469 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 NPAS4Q8IUM7 802 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 KIAA0319LQ8IZA0 1049 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 GJD3Q8N144 294 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 ATP8B4Q8TF62 1192 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 BRF1Q92994 677 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 JAKMIP1Q96N16 626 aaKnown RBP9.62□□□□□ -0.87
USP28-203ENST00000537490 C11orf84Q9BUA3 381 aaPredicted RBP9.62□□□□□ -0.87
USP28-203ENST00000537490 FTHL17Q9BXU8 183 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 ZMYND12Q9H0C1 365 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 LMAN2LQ9H0V9 348 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 ALG13Q9NP73 1137 aaKnown RBP9.62□□□□□ -0.87
USP28-203ENST00000537490 ZNF302Q9NR11 478 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 CLDND1Q9NY35 253 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 RWDD3Q9Y3V2 267 aa9.62□□□□□ -0.87
USP28-203ENST00000537490 MRPL42Q9Y6G3 142 aaKnown RBP9.62□□□□□ -0.87
USP28-203ENST00000537490 KAT6AQ92794 2004 aa9.61□□□□□ -0.87
USP28-203ENST00000537490 CCDC196A0A1B0GTZ2 297 aa9.61□□□□□ -0.87
USP28-203ENST00000537490 FAM86C2PA6NEL3 165 aa9.61□□□□□ -0.87
USP28-203ENST00000537490 ZBTB42B2RXF5 422 aa9.61□□□□□ -0.87
USP28-203ENST00000537490 IPO5O00410 1097 aaKnown RBP9.61□□□□□ -0.87
USP28-203ENST00000537490 PRPF3O43395 683 aaKnown RBP9.61□□□□□ -0.87
USP28-203ENST00000537490 EDIL3O43854 480 aa9.61□□□□□ -0.87
USP28-203ENST00000537490 MGEA5O60502 916 aa9.61□□□□□ -0.87
USP28-203ENST00000537490 GPR37L1O60883 481 aa9.61□□□□□ -0.87
USP28-203ENST00000537490 CSPG5O95196 566 aa9.61□□□□□ -0.87
USP28-203ENST00000537490 IBSPP21815 317 aaPredicted RBP9.61□□□□□ -0.87
USP28-203ENST00000537490 DNAJB1P25685 340 aa9.61□□□□□ -0.87
USP28-203ENST00000537490 GTF2F1P35269 517 aaKnown RBP eCLIP9.61□□□□□ -0.87
USP28-203ENST00000537490 DLX2Q07687 328 aaPredicted RBP9.61□□□□□ -0.87
USP28-203ENST00000537490 HYAL1Q12794 435 aa9.61□□□□□ -0.87
USP28-203ENST00000537490 NFX1Q12986 1120 aaKnown RBP9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms