RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 MAFBQ9Y5Q3 323 aaPredicted RBP12.1□□□□□ -0.47
CD44-227ENST00000528086 IGSF9BQ9UPX0 1349 aa12.1□□□□□ -0.47
CD44-227ENST00000528086 COL4A4P53420 1690 aaPredicted RBP12.1□□□□□ -0.47
CD44-227ENST00000528086 ABHD14A-ACY1A0A1B0GW23 586 aa12.09□□□□□ -0.47
CD44-227ENST00000528086 RFXAPO00287 272 aa12.09□□□□□ -0.47
CD44-227ENST00000528086 CAND2O75155 1236 aa12.09□□□□□ -0.47
CD44-227ENST00000528086 CD2BP2O95400 341 aaKnown RBP12.09□□□□□ -0.47
CD44-227ENST00000528086 CA3P07451 260 aa12.09□□□□□ -0.47
CD44-227ENST00000528086 MCTP2Q6DN12 878 aa12.09□□□□□ -0.47
CD44-227ENST00000528086 ZNF746Q6NUN9 644 aaPredicted RBP12.09□□□□□ -0.47
CD44-227ENST00000528086 RTN4RL1Q86UN2 441 aaPredicted RBP12.09□□□□□ -0.47
CD44-227ENST00000528086 FAM177A1Q8N128 213 aaPredicted RBP12.09□□□□□ -0.47
CD44-227ENST00000528086 LINC01465Q8N7H1 131 aa12.09□□□□□ -0.47
CD44-227ENST00000528086 PHOSPHO2Q8TCD6 241 aa12.09□□□□□ -0.47
CD44-227ENST00000528086 ATP8B4Q8TF62 1192 aa12.09□□□□□ -0.47
CD44-227ENST00000528086 CEP89Q96ST8 783 aa12.09□□□□□ -0.47
CD44-227ENST00000528086 SLC9A7Q96T83 725 aa12.09□□□□□ -0.47
CD44-227ENST00000528086 PCDHA2Q9Y5H9 948 aa12.09□□□□□ -0.47
CD44-227ENST00000528086 XIRP2A4UGR9 3374 aa12.09□□□□□ -0.47
CD44-227ENST00000528086 ATG2AQ2TAZ0 1938 aa12.09□□□□□ -0.47
CD44-227ENST00000528086 POTEB3A0JP26 581 aa12.08□□□□□ -0.48
CD44-227ENST00000528086 EML1O00423 815 aa12.08□□□□□ -0.48
CD44-227ENST00000528086 LPXNO60711 386 aa12.08□□□□□ -0.48
CD44-227ENST00000528086 PARNO95453 639 aaKnown RBP12.08□□□□□ -0.48
CD44-227ENST00000528086 GNAT1P11488 350 aa12.08□□□□□ -0.48
CD44-227ENST00000528086 ACTN1P12814 892 aa12.08□□□□□ -0.48
CD44-227ENST00000528086 RBM25P49756 843 aaKnown RBP12.08□□□□□ -0.48
CD44-227ENST00000528086 SETQ01105 290 aaPredicted RBP12.08□□□□□ -0.48
CD44-227ENST00000528086 TMEM62Q0P6H9 643 aa12.08□□□□□ -0.48
CD44-227ENST00000528086 ANKRD1Q15327 319 aa12.08□□□□□ -0.48
CD44-227ENST00000528086 RAB30Q15771 203 aa12.08□□□□□ -0.48
CD44-227ENST00000528086 FBXO47Q5MNV8 452 aa12.08□□□□□ -0.48
CD44-227ENST00000528086 GALNT17Q6IS24 598 aa12.08□□□□□ -0.48
CD44-227ENST00000528086 POTEBQ6S5H4 581 aa12.08□□□□□ -0.48
CD44-227ENST00000528086 MTHFD1LQ6UB35 978 aa12.08□□□□□ -0.48
CD44-227ENST00000528086 KIAA0319LQ8IZA0 1049 aa12.08□□□□□ -0.48
CD44-227ENST00000528086 CRIPAKQ8N1N5 446 aa12.08□□□□□ -0.48
CD44-227ENST00000528086 HAS1Q92839 578 aa12.08□□□□□ -0.48
CD44-227ENST00000528086 MTIF3Q9H2K0 278 aaKnown RBP12.08□□□□□ -0.48
CD44-227ENST00000528086 KCNMB3Q9NPA1 279 aa12.08□□□□□ -0.48
CD44-227ENST00000528086 ZNF302Q9NR11 478 aa12.08□□□□□ -0.48
CD44-227ENST00000528086 TBC1D22BQ9NU19 505 aa12.08□□□□□ -0.48
CD44-227ENST00000528086 VAV3Q9UKW4 847 aa12.08□□□□□ -0.48
CD44-227ENST00000528086 CDY2AQ9Y6F7 541 aa12.08□□□□□ -0.48
CD44-227ENST00000528086 MYO7AQ13402 2215 aa12.07□□□□□ -0.48
CD44-227ENST00000528086 TMEM150BA6NC51 233 aa12.07□□□□□ -0.48
CD44-227ENST00000528086 RRN3P2A6NIE6 340 aa12.07□□□□□ -0.48
CD44-227ENST00000528086 GJB5O95377 273 aa12.07□□□□□ -0.48
CD44-227ENST00000528086 C22orf31O95567 290 aa12.07□□□□□ -0.48
CD44-227ENST00000528086 LINC00271P0C7V0 271 aa12.07□□□□□ -0.48
CD44-227ENST00000528086 GHRP10912 638 aa12.07□□□□□ -0.48
CD44-227ENST00000528086 KLRC1P26715 233 aa12.07□□□□□ -0.48
CD44-227ENST00000528086 MRPS6P82932 125 aaKnown RBP12.07□□□□□ -0.48
CD44-227ENST00000528086 NONOQ15233 471 aaKnown RBP eCLIP12.07□□□□□ -0.48
CD44-227ENST00000528086 KRT40Q6A162 431 aa12.07□□□□□ -0.48
CD44-227ENST00000528086 TAF2Q6P1X5 1199 aa12.07□□□□□ -0.48
CD44-227ENST00000528086 PDXDC2PQ6P474 469 aa12.07□□□□□ -0.48
CD44-227ENST00000528086 MOXD1Q6UVY6 613 aa12.07□□□□□ -0.48
CD44-227ENST00000528086 TMEM40Q8WWA1 233 aa12.07□□□□□ -0.48
CD44-227ENST00000528086 RIT2Q99578 217 aa12.07□□□□□ -0.48
CD44-227ENST00000528086 FAM49AQ9H0Q0 323 aaPredicted RBP12.07□□□□□ -0.48
CD44-227ENST00000528086 TMX1Q9H3N1 280 aa12.07□□□□□ -0.48
CD44-227ENST00000528086 AZI2Q9H6S1 392 aa12.07□□□□□ -0.48
CD44-227ENST00000528086 CERS4Q9HA82 394 aa12.07□□□□□ -0.48
CD44-227ENST00000528086 PRDM6Q9NQX0 595 aa12.07□□□□□ -0.48
CD44-227ENST00000528086 WRAP73Q9P2S5 460 aaPredicted RBP12.07□□□□□ -0.48
CD44-227ENST00000528086 GABBR1Q9UBS5 961 aa12.07□□□□□ -0.48
CD44-227ENST00000528086 MSRAQ9UJ68 235 aa12.07□□□□□ -0.48
CD44-227ENST00000528086 TRPC6Q9Y210 931 aa12.07□□□□□ -0.48
CD44-227ENST00000528086 PCDHA10Q9Y5I2 948 aa12.07□□□□□ -0.48
CD44-227ENST00000528086 BRWD1Q9NSI6 2320 aa12.06□□□□□ -0.48
CD44-227ENST00000528086 NLRC5Q86WI3 1866 aa12.06□□□□□ -0.48
CD44-227ENST00000528086 BTBD18B2RXH4 712 aa12.06□□□□□ -0.48
CD44-227ENST00000528086 HBP1O60381 514 aa12.06□□□□□ -0.48
CD44-227ENST00000528086 CDKL5O76039 1030 aa12.06□□□□□ -0.48
CD44-227ENST00000528086 SLC26A2P50443 739 aa12.06□□□□□ -0.48
CD44-227ENST00000528086 FOSBP53539 338 aa12.06□□□□□ -0.48
CD44-227ENST00000528086 HTRA4P83105 476 aaPredicted RBP12.06□□□□□ -0.48
CD44-227ENST00000528086 KRT76Q01546 638 aa12.06□□□□□ -0.48
CD44-227ENST00000528086 SPIRE1Q08AE8 756 aa12.06□□□□□ -0.48
CD44-227ENST00000528086 IKBKEQ14164 716 aa12.06□□□□□ -0.48
CD44-227ENST00000528086 TARBP2Q15633 366 aaKnown RBP12.06□□□□□ -0.48
CD44-227ENST00000528086 MIS18BP1Q6P0N0 1132 aa12.06□□□□□ -0.48
CD44-227ENST00000528086 FAM117BQ6P1L5 589 aa12.06□□□□□ -0.48
CD44-227ENST00000528086 CPLX2Q6PUV4 134 aaKnown RBP12.06□□□□□ -0.48
CD44-227ENST00000528086 PIK3AP1Q6ZUJ8 805 aa12.06□□□□□ -0.48
CD44-227ENST00000528086 KRT25Q7Z3Z0 450 aa12.06□□□□□ -0.48
CD44-227ENST00000528086 MAFAQ8NHW3 353 aaPredicted RBP12.06□□□□□ -0.48
CD44-227ENST00000528086 RC3H2Q9HBD1 1191 aaKnown RBP12.06□□□□□ -0.48
CD44-227ENST00000528086 DISC1Q9NRI5 854 aa12.06□□□□□ -0.48
CD44-227ENST00000528086 KIAA1671Q9BY89 1806 aa12.06□□□□□ -0.48
CD44-227ENST00000528086 SMIM35A0A1B0GVV1 85 aa12.05□□□□□ -0.48
CD44-227ENST00000528086 LINC01553A4QN01 128 aa12.05□□□□□ -0.48
CD44-227ENST00000528086 WDR64B1ANS9 1081 aa12.05□□□□□ -0.48
CD44-227ENST00000528086 BACH1O14867 736 aa12.05□□□□□ -0.48
CD44-227ENST00000528086 CHMP2AO43633 222 aa12.05□□□□□ -0.48
CD44-227ENST00000528086 GPR32O75388 356 aa12.05□□□□□ -0.48
CD44-227ENST00000528086 MMP1P03956 469 aa12.05□□□□□ -0.48
CD44-227ENST00000528086 FOSL2P15408 326 aa12.05□□□□□ -0.48
CD44-227ENST00000528086 CD52P31358 61 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms