RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 C10orf67Q8IYJ2 551 aa12.14□□□□□ -0.47
HDAC9-228ENST00000524023 RUFY1Q96T51 708 aa12.14□□□□□ -0.47
HDAC9-228ENST00000524023 KRT12Q99456 494 aa12.14□□□□□ -0.47
HDAC9-228ENST00000524023 PLEKHA4Q9H4M7 779 aa12.14□□□□□ -0.47
HDAC9-228ENST00000524023 EPB41L5Q9HCM4 733 aa12.14□□□□□ -0.47
HDAC9-228ENST00000524023 KCNQ5Q9NR82 932 aa12.14□□□□□ -0.47
HDAC9-228ENST00000524023 NFU1Q9UMS0 254 aa12.14□□□□□ -0.47
HDAC9-228ENST00000524023 SPATA31A6Q5VVP1 1343 aa12.14□□□□□ -0.47
HDAC9-228ENST00000524023 ESYT3A0FGR9 886 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 RSPH10B2B2RC85 870 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 CES2O00748 559 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 MSH4O15457 936 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 RSPH10BP0C881 870 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 CIITAP33076 1130 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 IRAK1P51617 712 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 SLC20A2Q08357 652 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 PAK2Q13177 524 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 EPHA7Q15375 998 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 TTMPQ5BVD1 217 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 GBP6Q6ZN66 633 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 TMEM179Q6ZVK1 233 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 KIAA0825Q8IV33 1275 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 USP38Q8NB14 1042 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 GMCL1P1Q8NEA9 526 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 IFT81Q8WYA0 676 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 ARL8AQ96BM9 186 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 ZIM3Q96PE6 472 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 MRIQ9BWK5 157 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 IDI2Q9BXS1 227 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 RASSF4Q9H2L5 321 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 DBNDD1Q9H9R9 158 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 TYW1Q9NV66 732 aaKnown RBP12.13□□□□□ -0.47
HDAC9-228ENST00000524023 TMEM51Q9NW97 253 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 VAV3Q9UKW4 847 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 ASTN1O14525 1302 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 SLC16A3O15427 465 aaKnown RBP12.13□□□□□ -0.47
HDAC9-228ENST00000524023 NDUFB10O96000 172 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 NR3C1P04150 777 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 FAM153BP0C7A2 387 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 ALDH1B1P30837 517 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 PRKCIP41743 596 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 RNASE9P60153 205 aaKnown RBP12.13□□□□□ -0.47
HDAC9-228ENST00000524023 CYP4A11Q02928 519 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 FAM153CQ494X1 144 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 DCAF17Q5H9S7 520 aaPredicted RBP12.13□□□□□ -0.47
HDAC9-228ENST00000524023 SYDE2Q5VT97 1194 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 PODNQ7Z5L7 613 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 RBM46Q8TBY0 533 aaKnown RBP12.13□□□□□ -0.47
HDAC9-228ENST00000524023 TAF4BQ92750 862 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 GMCL1Q96IK5 515 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 POLR3CQ9BUI4 534 aaPredicted RBP12.13□□□□□ -0.47
HDAC9-228ENST00000524023 CAPS2Q9BXY5 557 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 BHMT2Q9H2M3 363 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 BCAS3Q9H6U6 928 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 METTL14Q9HCE5 456 aaKnown RBP12.13□□□□□ -0.47
HDAC9-228ENST00000524023 SIX2Q9NPC8 291 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 FAM153AQ9UHL3 310 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 NAGPAQ9UK23 515 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 TMEM59LQ9UK28 342 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 FBXL5Q9UKA1 691 aa12.13□□□□□ -0.47
HDAC9-228ENST00000524023 OPLAHO14841 1288 aa12.12□□□□□ -0.47
HDAC9-228ENST00000524023 CLSTN1O94985 981 aa12.12□□□□□ -0.47
HDAC9-228ENST00000524023 GDF11O95390 407 aa12.12□□□□□ -0.47
HDAC9-228ENST00000524023 TAL1P17542 331 aaPredicted RBP12.12□□□□□ -0.47
HDAC9-228ENST00000524023 RPL13P26373 211 aaKnown RBP12.12□□□□□ -0.47
HDAC9-228ENST00000524023 CASP4P49662 377 aa12.12□□□□□ -0.47
HDAC9-228ENST00000524023 IKQ13123 557 aaPredicted RBP12.12□□□□□ -0.47
HDAC9-228ENST00000524023 RPS6KA1Q15418 735 aa12.12□□□□□ -0.47
HDAC9-228ENST00000524023 ALKBH5Q6P6C2 394 aaKnown RBP12.12□□□□□ -0.47
HDAC9-228ENST00000524023 IQCKQ8N0W5 287 aa12.12□□□□□ -0.47
HDAC9-228ENST00000524023 MREGQ8N565 214 aa12.12□□□□□ -0.47
HDAC9-228ENST00000524023 LRRC57Q8N9N7 239 aa12.12□□□□□ -0.47
HDAC9-228ENST00000524023 CYP2W1Q8TAV3 490 aa12.12□□□□□ -0.47
HDAC9-228ENST00000524023 CASKIN2Q8WXE0 1202 aa12.12□□□□□ -0.47
HDAC9-228ENST00000524023 SLC35C1Q96A29 364 aa12.12□□□□□ -0.47
HDAC9-228ENST00000524023 RUSC1Q9BVN2 902 aa12.12□□□□□ -0.47
HDAC9-228ENST00000524023 POLD4Q9HCU8 107 aa12.12□□□□□ -0.47
HDAC9-228ENST00000524023 SMCHD1A6NHR9 2005 aa12.12□□□□□ -0.47
HDAC9-228ENST00000524023 EML1O00423 815 aa12.12□□□□□ -0.47
HDAC9-228ENST00000524023 KCNK3O14649 394 aa12.12□□□□□ -0.47
HDAC9-228ENST00000524023 RAD51CO43502 376 aa12.12□□□□□ -0.47
HDAC9-228ENST00000524023 TBCAO75347 108 aaKnown RBP12.12□□□□□ -0.47
HDAC9-228ENST00000524023 KIF4AO95239 1232 aa12.12□□□□□ -0.47
HDAC9-228ENST00000524023 GCNT3O95395 438 aa12.12□□□□□ -0.47
HDAC9-228ENST00000524023 EYA4O95677 639 aa12.12□□□□□ -0.47
HDAC9-228ENST00000524023 CYP3A4P08684 503 aa12.12□□□□□ -0.47
HDAC9-228ENST00000524023 HOXA13P31271 388 aaPredicted RBP12.12□□□□□ -0.47
HDAC9-228ENST00000524023 RBM5P52756 815 aaKnown RBP eCLIP12.12□□□□□ -0.47
HDAC9-228ENST00000524023 JAM2P57087 298 aa12.12□□□□□ -0.47
HDAC9-228ENST00000524023 TNNC1P63316 161 aa12.12□□□□□ -0.47
HDAC9-228ENST00000524023 IFI16Q16666 785 aaKnown RBP12.12□□□□□ -0.47
HDAC9-228ENST00000524023 ABCB5Q2M3G0 1257 aa12.12□□□□□ -0.47
HDAC9-228ENST00000524023 TCERG1LQ5VWI1 586 aa12.12□□□□□ -0.47
HDAC9-228ENST00000524023 CCDC43Q96MW1 224 aaKnown RBP12.12□□□□□ -0.47
HDAC9-228ENST00000524023 EIF2AK1Q9BQI3 630 aaKnown RBP12.12□□□□□ -0.47
HDAC9-228ENST00000524023 AJAP1Q9UKB5 411 aaPredicted RBP12.12□□□□□ -0.47
HDAC9-228ENST00000524023 NENFQ9UMX5 172 aa12.12□□□□□ -0.47
HDAC9-228ENST00000524023 RABGAP1Q9Y3P9 1069 aa12.12□□□□□ -0.47
HDAC9-228ENST00000524023 CLIC2O15247 247 aa12.11□□□□□ -0.47
HDAC9-228ENST00000524023 FLOT1O75955 427 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms