RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 RGS13O14921 159 aa0.54□□□□□ -2.32
RNU6-539P-201ENST00000516665 TOP3BO95985 862 aaKnown RBP0.54□□□□□ -2.32
RNU6-539P-201ENST00000516665 NEFLP07196 543 aa0.54□□□□□ -2.32
RNU6-539P-201ENST00000516665 PTTG1IPP53801 180 aa0.54□□□□□ -2.32
RNU6-539P-201ENST00000516665 CACNA2D1P54289 1103 aa0.54□□□□□ -2.32
RNU6-539P-201ENST00000516665 JAM2P57087 298 aa0.54□□□□□ -2.32
RNU6-539P-201ENST00000516665 FAM189BP81408 668 aa0.54□□□□□ -2.32
RNU6-539P-201ENST00000516665 AMER1Q5JTC6 1135 aaPredicted RBP0.54□□□□□ -2.32
RNU6-539P-201ENST00000516665 MORN5Q5VZ52 161 aa0.54□□□□□ -2.32
RNU6-539P-201ENST00000516665 CPNE8Q86YQ8 564 aa0.54□□□□□ -2.32
RNU6-539P-201ENST00000516665 ARHGEF19Q8IW93 802 aa0.54□□□□□ -2.32
RNU6-539P-201ENST00000516665 SLC44A3Q8N4M1 653 aa0.54□□□□□ -2.32
RNU6-539P-201ENST00000516665 OR14K1Q8NGZ2 314 aa0.54□□□□□ -2.32
RNU6-539P-201ENST00000516665 GTF3C2Q8WUA4 911 aaPredicted RBP0.54□□□□□ -2.32
RNU6-539P-201ENST00000516665 NSMCE1Q8WV22 266 aa0.54□□□□□ -2.32
RNU6-539P-201ENST00000516665 MNTQ99583 582 aa0.54□□□□□ -2.32
RNU6-539P-201ENST00000516665 HIPK2Q9H2X6 1198 aa0.54□□□□□ -2.32
RNU6-539P-201ENST00000516665 REV1Q9UBZ9 1251 aa0.54□□□□□ -2.32
RNU6-539P-201ENST00000516665 PCDHB12Q9Y5F1 795 aa0.54□□□□□ -2.32
RNU6-539P-201ENST00000516665 TMEM200CA6NKL6 621 aa0.53□□□□□ -2.32
RNU6-539P-201ENST00000516665 SLC26A4O43511 780 aa0.53□□□□□ -2.32
RNU6-539P-201ENST00000516665 CKBP12277 381 aa0.53□□□□□ -2.32
RNU6-539P-201ENST00000516665 SMAD3P84022 425 aaKnown RBP0.53□□□□□ -2.32
RNU6-539P-201ENST00000516665 MPP3Q13368 585 aa0.53□□□□□ -2.32
RNU6-539P-201ENST00000516665 RIN1Q13671 783 aa0.53□□□□□ -2.32
RNU6-539P-201ENST00000516665 ZNF169Q14929 603 aaPredicted RBP0.53□□□□□ -2.32
RNU6-539P-201ENST00000516665 ELAVL1Q15717 326 aaKnown RBP0.53□□□□□ -2.32
RNU6-539P-201ENST00000516665 TTBK2Q6IQ55 1244 aa0.53□□□□□ -2.32
RNU6-539P-201ENST00000516665 USP30Q70CQ3 517 aa0.53□□□□□ -2.32
RNU6-539P-201ENST00000516665 HTR3DQ70Z44 454 aa0.53□□□□□ -2.32
RNU6-539P-201ENST00000516665 LARP4Q71RC2 724 aaKnown RBP eCLIP0.53□□□□□ -2.32
RNU6-539P-201ENST00000516665 SLITRK4Q8IW52 837 aa0.53□□□□□ -2.32
RNU6-539P-201ENST00000516665 ZNF843Q8N446 348 aa0.53□□□□□ -2.32
RNU6-539P-201ENST00000516665 HASPINQ8TF76 798 aa0.53□□□□□ -2.32
RNU6-539P-201ENST00000516665 LYZL4Q96KX0 146 aa0.53□□□□□ -2.32
RNU6-539P-201ENST00000516665 IL17RBQ9NRM6 502 aa0.53□□□□□ -2.32
RNU6-539P-201ENST00000516665 FLRT1Q9NZU1 646 aa0.53□□□□□ -2.32
RNU6-539P-201ENST00000516665 MARCH2Q9P0N8 246 aa0.53□□□□□ -2.32
RNU6-539P-201ENST00000516665 ESYT3A0FGR9 886 aa0.52□□□□□ -2.33
RNU6-539P-201ENST00000516665 SCAF4O95104 1147 aaKnown RBP0.52□□□□□ -2.33
RNU6-539P-201ENST00000516665 IL18BPO95998 194 aa0.52□□□□□ -2.33
RNU6-539P-201ENST00000516665 CD3EP07766 207 aa0.52□□□□□ -2.33
RNU6-539P-201ENST00000516665 POLR2BP30876 1174 aaKnown RBP0.52□□□□□ -2.33
RNU6-539P-201ENST00000516665 RARRES1P49788 294 aa0.52□□□□□ -2.33
RNU6-539P-201ENST00000516665 HNRNPA3P51991 378 aaKnown RBP0.52□□□□□ -2.33
RNU6-539P-201ENST00000516665 EXOSC10Q01780 885 aaKnown RBP0.52□□□□□ -2.33
RNU6-539P-201ENST00000516665 SAFB2Q14151 953 aaKnown RBP eCLIP0.52□□□□□ -2.33
RNU6-539P-201ENST00000516665 SKIDA1Q1XH10 827 aa0.52□□□□□ -2.33
RNU6-539P-201ENST00000516665 MRGPRG-AS1Q2M3A8 158 aa0.52□□□□□ -2.33
RNU6-539P-201ENST00000516665 ZNF585BQ52M93 769 aa0.52□□□□□ -2.33
RNU6-539P-201ENST00000516665 NAALADL2Q58DX5 795 aa0.52□□□□□ -2.33
RNU6-539P-201ENST00000516665 NR2C2APQ86WQ0 139 aa0.52□□□□□ -2.33
RNU6-539P-201ENST00000516665 MB21D1Q8N884 522 aa0.52□□□□□ -2.33
RNU6-539P-201ENST00000516665 ZBTB38Q8NAP3 1195 aaPredicted RBP0.52□□□□□ -2.33
RNU6-539P-201ENST00000516665 SLC9A6Q92581 669 aa0.52□□□□□ -2.33
RNU6-539P-201ENST00000516665 NKD1Q969G9 470 aa0.52□□□□□ -2.33
RNU6-539P-201ENST00000516665 WBP2Q969T9 261 aa0.52□□□□□ -2.33
RNU6-539P-201ENST00000516665 SCYL1Q96KG9 808 aa0.52□□□□□ -2.33
RNU6-539P-201ENST00000516665 GJB4Q9NTQ9 266 aa0.52□□□□□ -2.33
RNU6-539P-201ENST00000516665 PPM1HQ9ULR3 514 aa0.52□□□□□ -2.33
RNU6-539P-201ENST00000516665 SMAD5-AS1Q9Y6J3 95 aa0.52□□□□□ -2.33
RNU6-539P-201ENST00000516665 TCRBV5S2A0A599 114 aa0.51□□□□□ -2.33
RNU6-539P-201ENST00000516665 PIPSLA2A3N6 862 aa0.51□□□□□ -2.33
RNU6-539P-201ENST00000516665 C7orf72A4D263 438 aa0.51□□□□□ -2.33
RNU6-539P-201ENST00000516665 C4orf47A7E2U8 309 aa0.51□□□□□ -2.33
RNU6-539P-201ENST00000516665 GOLGA6L6A8MZA4 724 aa0.51□□□□□ -2.33
RNU6-539P-201ENST00000516665 MAN2B1O00754 1011 aa0.51□□□□□ -2.33
RNU6-539P-201ENST00000516665 CUTAO60888 179 aa0.51□□□□□ -2.33
RNU6-539P-201ENST00000516665 CAMTA2O94983 1202 aa0.51□□□□□ -2.33
RNU6-539P-201ENST00000516665 FAM13AO94988 1023 aa0.51□□□□□ -2.33
RNU6-539P-201ENST00000516665 COL2A1P02458 1487 aaPredicted RBP0.51□□□□□ -2.33
RNU6-539P-201ENST00000516665 PRKCGP05129 697 aa0.51□□□□□ -2.33
RNU6-539P-201ENST00000516665 THBDP07204 575 aa0.51□□□□□ -2.33
RNU6-539P-201ENST00000516665 RHCEP18577 417 aa0.51□□□□□ -2.33
RNU6-539P-201ENST00000516665 ETV4P43268 484 aa0.51□□□□□ -2.33
RNU6-539P-201ENST00000516665 RPL6Q02878 288 aaKnown RBP0.51□□□□□ -2.33
RNU6-539P-201ENST00000516665 HGFACQ04756 655 aa0.51□□□□□ -2.33
RNU6-539P-201ENST00000516665 VASNQ6EMK4 673 aa0.51□□□□□ -2.33
RNU6-539P-201ENST00000516665 TEX2Q8IWB9 1127 aa0.51□□□□□ -2.33
RNU6-539P-201ENST00000516665 ATXN2LQ8WWM7 1075 aaKnown RBP0.51□□□□□ -2.33
RNU6-539P-201ENST00000516665 CLP1Q92989 425 aaKnown RBP0.51□□□□□ -2.33
RNU6-539P-201ENST00000516665 GLMNQ92990 594 aa0.51□□□□□ -2.33
RNU6-539P-201ENST00000516665 SLITRK1Q96PX8 696 aa0.51□□□□□ -2.33
RNU6-539P-201ENST00000516665 MKRN2Q9H000 416 aaKnown RBP0.51□□□□□ -2.33
RNU6-539P-201ENST00000516665 MUC5BQ9HC84 5762 aaPredicted RBP0.51□□□□□ -2.33
RNU6-539P-201ENST00000516665 NLRP2Q9NX02 1062 aa0.51□□□□□ -2.33
RNU6-539P-201ENST00000516665 A0A1W2PRX2 142 aa0.5□□□□□ -2.33
RNU6-539P-201ENST00000516665 UNC119BA6NIH7 251 aa0.5□□□□□ -2.33
RNU6-539P-201ENST00000516665 AHRRA9YTQ3 701 aa0.5□□□□□ -2.33
RNU6-539P-201ENST00000516665 SHOXO15266 292 aa0.5□□□□□ -2.33
RNU6-539P-201ENST00000516665 SERPINB2P05120 415 aa0.5□□□□□ -2.33
RNU6-539P-201ENST00000516665 BMT2Q1RMZ1 405 aa0.5□□□□□ -2.33
RNU6-539P-201ENST00000516665 ADHFE1Q8IWW8 467 aa0.5□□□□□ -2.33
RNU6-539P-201ENST00000516665 ANKRD24Q8TF21 1146 aa0.5□□□□□ -2.33
RNU6-539P-201ENST00000516665 ASB10Q8WXI3 467 aa0.5□□□□□ -2.33
RNU6-539P-201ENST00000516665 DPF3Q92784 378 aa0.5□□□□□ -2.33
RNU6-539P-201ENST00000516665 TACO1Q9BSH4 297 aaKnown RBP0.5□□□□□ -2.33
RNU6-539P-201ENST00000516665 NRIP3Q9NQ35 241 aa0.5□□□□□ -2.33
RNU6-539P-201ENST00000516665 KAT6AQ92794 2004 aa0.49□□□□□ -2.33
RNU6-539P-201ENST00000516665 PRR36Q9H6K5 1346 aa0.49□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms