RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 NASPP49321 788 aaPredicted RBP6.88□□□□□ -1.31
NUP54-218ENST00000515460 TGFB2P61812 414 aa6.88□□□□□ -1.31
NUP54-218ENST00000515460 GNPTABQ3T906 1256 aa6.88□□□□□ -1.31
NUP54-218ENST00000515460 BICRALQ6AI39 1079 aa6.88□□□□□ -1.31
NUP54-218ENST00000515460 ZC3H14Q6PJT7 736 aaKnown RBP6.88□□□□□ -1.31
NUP54-218ENST00000515460 CYP2R1Q6VVX0 501 aa6.88□□□□□ -1.31
NUP54-218ENST00000515460 FIBCD1Q8N539 461 aa6.88□□□□□ -1.31
NUP54-218ENST00000515460 LTV1Q96GA3 475 aaPredicted RBP6.88□□□□□ -1.31
NUP54-218ENST00000515460 SEC16BQ96JE7 1060 aa6.88□□□□□ -1.31
NUP54-218ENST00000515460 PUS7Q96PZ0 661 aaKnown RBP6.88□□□□□ -1.31
NUP54-218ENST00000515460 GBP3Q9H0R5 595 aa6.88□□□□□ -1.31
NUP54-218ENST00000515460 HCFC2Q9Y5Z7 792 aa6.88□□□□□ -1.31
NUP54-218ENST00000515460 A0A087WZG4 1122 aa6.87□□□□□ -1.31
NUP54-218ENST00000515460 TACR1P25103 407 aa6.87□□□□□ -1.31
NUP54-218ENST00000515460 ANP32AP39687 249 aaKnown RBP6.87□□□□□ -1.31
NUP54-218ENST00000515460 ECE1P42892 770 aa6.87□□□□□ -1.31
NUP54-218ENST00000515460 MAPKAPK2P49137 400 aa6.87□□□□□ -1.31
NUP54-218ENST00000515460 POU4F1Q01851 419 aa6.87□□□□□ -1.31
NUP54-218ENST00000515460 MAP3K12Q12852 859 aa6.87□□□□□ -1.31
NUP54-218ENST00000515460 NR1I3Q14994 352 aa6.87□□□□□ -1.31
NUP54-218ENST00000515460 LINC01356Q8N9X3 169 aa6.87□□□□□ -1.31
NUP54-218ENST00000515460 PDCL3Q9H2J4 239 aa6.87□□□□□ -1.31
NUP54-218ENST00000515460 NOL6Q9H6R4 1146 aaKnown RBP6.87□□□□□ -1.31
NUP54-218ENST00000515460 TERF2IPQ9NYB0 399 aa6.87□□□□□ -1.31
NUP54-218ENST00000515460 WHRNQ9P202 907 aa6.87□□□□□ -1.31
NUP54-218ENST00000515460 ZNF451Q9Y4E5 1061 aa6.87□□□□□ -1.31
NUP54-218ENST00000515460 BRCA1P38398 1863 aaKnown RBP6.87□□□□□ -1.31
NUP54-218ENST00000515460 ARFGEF1Q9Y6D6 1849 aa6.87□□□□□ -1.31
NUP54-218ENST00000515460 LTBP3Q9NS15 1303 aa6.86□□□□□ -1.31
NUP54-218ENST00000515460 A0A1W2PQH9 124 aa6.86□□□□□ -1.31
NUP54-218ENST00000515460 PFKLP17858 780 aa6.86□□□□□ -1.31
NUP54-218ENST00000515460 PTMSP20962 102 aa6.86□□□□□ -1.31
NUP54-218ENST00000515460 HOXC9P31274 260 aa6.86□□□□□ -1.31
NUP54-218ENST00000515460 MAP2K2P36507 400 aa6.86□□□□□ -1.31
NUP54-218ENST00000515460 SLC7A5Q01650 507 aa6.86□□□□□ -1.31
NUP54-218ENST00000515460 PPP2R5DQ14738 602 aa6.86□□□□□ -1.31
NUP54-218ENST00000515460 PPP2R5EQ16537 467 aa6.86□□□□□ -1.31
NUP54-218ENST00000515460 HEATR6Q6AI08 1181 aaKnown RBP6.86□□□□□ -1.31
NUP54-218ENST00000515460 Q7L0L9 218 aa6.86□□□□□ -1.31
NUP54-218ENST00000515460 SP8Q8IXZ3 490 aa6.86□□□□□ -1.31
NUP54-218ENST00000515460 CXorf38Q8TB03 319 aa6.86□□□□□ -1.31
NUP54-218ENST00000515460 SECISBP2LQ93073 1101 aaKnown RBP6.86□□□□□ -1.31
NUP54-218ENST00000515460 ZDHHC15Q96MV8 337 aa6.86□□□□□ -1.31
NUP54-218ENST00000515460 FCRL3Q96P31 734 aaPredicted RBP6.86□□□□□ -1.31
NUP54-218ENST00000515460 TESK2Q96S53 571 aa6.86□□□□□ -1.31
NUP54-218ENST00000515460 HAUS7Q99871 368 aa6.86□□□□□ -1.31
NUP54-218ENST00000515460 ADAM7Q9H2U9 754 aa6.86□□□□□ -1.31
NUP54-218ENST00000515460 CCNL1Q9UK58 526 aaPredicted RBP6.86□□□□□ -1.31
NUP54-218ENST00000515460 DIS3Q9Y2L1 958 aaKnown RBP6.86□□□□□ -1.31
NUP54-218ENST00000515460 PRUNE2Q8WUY3 3088 aa6.86□□□□□ -1.31
NUP54-218ENST00000515460 EDC4Q6P2E9 1401 aaKnown RBP6.85□□□□□ -1.31
NUP54-218ENST00000515460 WNK3Q9BYP7 1800 aa6.85□□□□□ -1.31
NUP54-218ENST00000515460 A0A1W2PP64 1363 aa6.85□□□□□ -1.31
NUP54-218ENST00000515460 MAP3K19Q56UN5 1328 aa6.85□□□□□ -1.31
NUP54-218ENST00000515460 ST20-MTHFSA0A0A6YYL1 179 aa6.85□□□□□ -1.31
NUP54-218ENST00000515460 CLGNO14967 610 aa6.85□□□□□ -1.31
NUP54-218ENST00000515460 FGF10O15520 208 aaPredicted RBP6.85□□□□□ -1.31
NUP54-218ENST00000515460 PPM1BO75688 479 aa6.85□□□□□ -1.31
NUP54-218ENST00000515460 CD3EP07766 207 aa6.85□□□□□ -1.31
NUP54-218ENST00000515460 DBHP09172 617 aa6.85□□□□□ -1.31
NUP54-218ENST00000515460 MCCP23508 829 aa6.85□□□□□ -1.31
NUP54-218ENST00000515460 NBPF6Q5VWK0 638 aa6.85□□□□□ -1.31
NUP54-218ENST00000515460 CTU1Q7Z7A3 348 aaKnown RBP6.85□□□□□ -1.31
NUP54-218ENST00000515460 ZCRB1Q8TBF4 217 aaKnown RBP6.85□□□□□ -1.31
NUP54-218ENST00000515460 NBPF4Q96M43 638 aa6.85□□□□□ -1.31
NUP54-218ENST00000515460 KRTAP4-5Q9BYR2 181 aa6.85□□□□□ -1.31
NUP54-218ENST00000515460 ACBD3Q9H3P7 528 aa6.85□□□□□ -1.31
NUP54-218ENST00000515460 PDLIM7Q9NR12 457 aa6.85□□□□□ -1.31
NUP54-218ENST00000515460 DBR1Q9UK59 544 aaKnown RBP6.85□□□□□ -1.31
NUP54-218ENST00000515460 PLA2G2DQ9UNK4 145 aa6.85□□□□□ -1.31
NUP54-218ENST00000515460 TIAM2Q8IVF5 1701 aa6.84□□□□□ -1.31
NUP54-218ENST00000515460 USP54Q70EL1 1684 aa6.84□□□□□ -1.31
NUP54-218ENST00000515460 F8W031 263 aaPredicted RBP6.84□□□□□ -1.31
NUP54-218ENST00000515460 FYB1O15117 783 aa6.84□□□□□ -1.31
NUP54-218ENST00000515460 CBFA2T2O43439 604 aa6.84□□□□□ -1.31
NUP54-218ENST00000515460 DDNO94850 711 aaPredicted RBP6.84□□□□□ -1.31
NUP54-218ENST00000515460 CYBBP04839 570 aa6.84□□□□□ -1.31
NUP54-218ENST00000515460 MMP10P09238 476 aa6.84□□□□□ -1.31
NUP54-218ENST00000515460 IFNGR1P15260 489 aa6.84□□□□□ -1.31
NUP54-218ENST00000515460 AMPHP49418 695 aa6.84□□□□□ -1.31
NUP54-218ENST00000515460 CASP7P55210 303 aa6.84□□□□□ -1.31
NUP54-218ENST00000515460 SKOR2Q2VWA4 1001 aaPredicted RBP6.84□□□□□ -1.31
NUP54-218ENST00000515460 DALRD3Q5D0E6 543 aaKnown RBP6.84□□□□□ -1.31
NUP54-218ENST00000515460 PAQR3Q6TCH7 311 aa6.84□□□□□ -1.31
NUP54-218ENST00000515460 ADAT2Q7Z6V5 191 aaKnown RBP6.84□□□□□ -1.31
NUP54-218ENST00000515460 VPS37DQ86XT2 251 aa6.84□□□□□ -1.31
NUP54-218ENST00000515460 TP53I13Q8NBR0 393 aaPredicted RBP6.84□□□□□ -1.31
NUP54-218ENST00000515460 SHDQ96IW2 340 aa6.84□□□□□ -1.31
NUP54-218ENST00000515460 COG3Q96JB2 828 aa6.84□□□□□ -1.31
NUP54-218ENST00000515460 PTCHD1Q96NR3 888 aa6.84□□□□□ -1.31
NUP54-218ENST00000515460 MAP7D2Q96T17 732 aa6.84□□□□□ -1.31
NUP54-218ENST00000515460 CAPN10Q9HC96 672 aa6.84□□□□□ -1.31
NUP54-218ENST00000515460 STXBP5LQ9Y2K9 1186 aa6.84□□□□□ -1.31
NUP54-218ENST00000515460 KIF13BQ9NQT8 1826 aa6.84□□□□□ -1.31
NUP54-218ENST00000515460 ABCC6O95255 1503 aa6.84□□□□□ -1.31
NUP54-218ENST00000515460 KDM6AO15550 1401 aaPredicted RBP6.84□□□□□ -1.32
NUP54-218ENST00000515460 NSD2O96028 1365 aa6.83□□□□□ -1.32
NUP54-218ENST00000515460 CCDC88AQ3V6T2 1871 aa6.83□□□□□ -1.32
NUP54-218ENST00000515460 IRS2Q9Y4H2 1338 aa6.83□□□□□ -1.32
NUP54-218ENST00000515460 ZC3H12DA2A288 527 aaKnown RBP6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms