RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 KCNJ15Q99712 375 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 BRIP1Q9BX63 1249 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 TRIM55Q9BYV6 548 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 SNTG2Q9NY99 539 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 TRAV20A0A0B4J274 112 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 CCDC85CA6NKD9 419 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 NARSO43776 548 aaKnown RBP4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 MAFKO60675 156 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 CYP1A1P04798 512 aaPredicted RBP4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 GRK2P25098 689 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 GRK3P35626 688 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 MRPS21P82921 87 aaKnown RBP4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 NRN1LQ496H8 165 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 PLEKHG4Q58EX7 1191 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 SPATC1Q76KD6 591 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 PROSER1Q86XN7 944 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 CCDC146Q8IYE0 955 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 LILRB2Q8N423 598 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 IGDCC4Q8TDY8 1250 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 MORC4Q8TE76 937 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 SRPK1Q96SB4 655 aaKnown RBP4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 L2HGDHQ9H9P8 463 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 SPC25Q9HBM1 224 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 FANCLQ9NW38 375 aa4.28□□□□□ -1.72
DEPDC1-204ENST00000489862 ASXL2Q76L83 1435 aa4.28□□□□□ -1.73
DEPDC1-204ENST00000489862 NKRFO15226 690 aaKnown RBP eCLIP4.27□□□□□ -1.73
DEPDC1-204ENST00000489862 B4GALT3O60512 393 aa4.27□□□□□ -1.73
DEPDC1-204ENST00000489862 PPFIA4O75335 1185 aa4.27□□□□□ -1.73
DEPDC1-204ENST00000489862 S100BP04271 92 aaPredicted RBP4.27□□□□□ -1.73
DEPDC1-204ENST00000489862 PDGFRBP09619 1106 aa4.27□□□□□ -1.73
DEPDC1-204ENST00000489862 IFRD2Q12894 506 aaPredicted RBP4.27□□□□□ -1.73
DEPDC1-204ENST00000489862 PRKD1Q15139 912 aaPredicted RBP4.27□□□□□ -1.73
DEPDC1-204ENST00000489862 NFE2L2Q16236 605 aa4.27□□□□□ -1.73
DEPDC1-204ENST00000489862 KIZQ2M2Z5 673 aa4.27□□□□□ -1.73
DEPDC1-204ENST00000489862 TKFCQ3LXA3 575 aa4.27□□□□□ -1.73
DEPDC1-204ENST00000489862 LSM12Q3MHD2 195 aaKnown RBP4.27□□□□□ -1.73
DEPDC1-204ENST00000489862 CYP4F22Q6NT55 531 aa4.27□□□□□ -1.73
DEPDC1-204ENST00000489862 TRIM48Q8IWZ4 208 aa4.27□□□□□ -1.73
DEPDC1-204ENST00000489862 LRRC47Q8N1G4 583 aaKnown RBP4.27□□□□□ -1.73
DEPDC1-204ENST00000489862 SH3TC2Q8TF17 1288 aa4.27□□□□□ -1.73
DEPDC1-204ENST00000489862 ZCCHC14Q8WYQ9 949 aaKnown RBP4.27□□□□□ -1.73
DEPDC1-204ENST00000489862 YTHDC1Q96MU7 727 aaKnown RBP4.27□□□□□ -1.73
DEPDC1-204ENST00000489862 TMEM209Q96SK2 561 aa4.27□□□□□ -1.73
DEPDC1-204ENST00000489862 JADE2Q9NQC1 790 aa4.27□□□□□ -1.73
DEPDC1-204ENST00000489862 BCCIPQ9P287 314 aaKnown RBP eCLIP4.27□□□□□ -1.73
DEPDC1-204ENST00000489862 TRAF6Q9Y4K3 522 aa4.27□□□□□ -1.73
DEPDC1-204ENST00000489862 TELO2Q9Y4R8 837 aa4.27□□□□□ -1.73
DEPDC1-204ENST00000489862 ZCCHC6Q5VYS8 1495 aaKnown RBP4.27□□□□□ -1.73
DEPDC1-204ENST00000489862 ESYT3A0FGR9 886 aa4.26□□□□□ -1.73
DEPDC1-204ENST00000489862 PATE3B3GLJ2 98 aa4.26□□□□□ -1.73
DEPDC1-204ENST00000489862 SOD2P04179 222 aa4.26□□□□□ -1.73
DEPDC1-204ENST00000489862 GNAT1P11488 350 aa4.26□□□□□ -1.73
DEPDC1-204ENST00000489862 RHBDL3P58872 404 aa4.26□□□□□ -1.73
DEPDC1-204ENST00000489862 GPR85P60893 370 aa4.26□□□□□ -1.73
DEPDC1-204ENST00000489862 PTH1RQ03431 593 aa4.26□□□□□ -1.73
DEPDC1-204ENST00000489862 TUSC3Q13454 348 aa4.26□□□□□ -1.73
DEPDC1-204ENST00000489862 SOGA3Q5TF21 947 aa4.26□□□□□ -1.73
DEPDC1-204ENST00000489862 STYK1Q6J9G0 422 aa4.26□□□□□ -1.73
DEPDC1-204ENST00000489862 IFNL3Q8IZI9 196 aa4.26□□□□□ -1.73
DEPDC1-204ENST00000489862 ZCRB1Q8TBF4 217 aaKnown RBP4.26□□□□□ -1.73
DEPDC1-204ENST00000489862 MBD6Q96DN6 1003 aa4.26□□□□□ -1.73
DEPDC1-204ENST00000489862 ZFYVE21Q9BQ24 234 aa4.26□□□□□ -1.73
DEPDC1-204ENST00000489862 SPATA9Q9BWV2 254 aa4.26□□□□□ -1.73
DEPDC1-204ENST00000489862 TMEM168Q9H0V1 697 aa4.26□□□□□ -1.73
DEPDC1-204ENST00000489862 IPPKQ9H8X2 491 aa4.26□□□□□ -1.73
DEPDC1-204ENST00000489862 PFDN2Q9UHV9 154 aa4.26□□□□□ -1.73
DEPDC1-204ENST00000489862 MSRB2Q9Y3D2 182 aa4.26□□□□□ -1.73
DEPDC1-204ENST00000489862 C9orf118A6NHY6 69 aa4.25□□□□□ -1.73
DEPDC1-204ENST00000489862 PROB1E7EW31 1015 aa4.25□□□□□ -1.73
DEPDC1-204ENST00000489862 PDPK1O15530 556 aa4.25□□□□□ -1.73
DEPDC1-204ENST00000489862 POU3F3P20264 500 aaPredicted RBP4.25□□□□□ -1.73
DEPDC1-204ENST00000489862 PAX3P23760 479 aa4.25□□□□□ -1.73
DEPDC1-204ENST00000489862 CDKN1CP49918 316 aaPredicted RBP4.25□□□□□ -1.73
DEPDC1-204ENST00000489862 GYS2P54840 703 aa4.25□□□□□ -1.73
DEPDC1-204ENST00000489862 SPIRE1Q08AE8 756 aa4.25□□□□□ -1.73
DEPDC1-204ENST00000489862 MAP9Q49MG5 647 aa4.25□□□□□ -1.73
DEPDC1-204ENST00000489862 PAN2Q504Q3 1202 aaKnown RBP4.25□□□□□ -1.73
DEPDC1-204ENST00000489862 HSP90AB2PQ58FF8 381 aa4.25□□□□□ -1.73
DEPDC1-204ENST00000489862 EPHA10Q5JZY3 1008 aa4.25□□□□□ -1.73
DEPDC1-204ENST00000489862 TRMT10BQ6PF06 316 aaKnown RBP4.25□□□□□ -1.73
DEPDC1-204ENST00000489862 MRGPRGQ86SM5 289 aa4.25□□□□□ -1.73
DEPDC1-204ENST00000489862 SMC5Q8IY18 1101 aa4.25□□□□□ -1.73
DEPDC1-204ENST00000489862 CKAP2LQ8IYA6 745 aa4.25□□□□□ -1.73
DEPDC1-204ENST00000489862 TTLL11Q8NHH1 800 aa4.25□□□□□ -1.73
DEPDC1-204ENST00000489862 UHMK1Q8TAS1 419 aaKnown RBP4.25□□□□□ -1.73
DEPDC1-204ENST00000489862 WWC2-AS2Q96NR7 200 aa4.25□□□□□ -1.73
DEPDC1-204ENST00000489862 HSPBP1Q9NZL4 362 aa4.25□□□□□ -1.73
DEPDC1-204ENST00000489862 CREB3O43889 395 aa4.24□□□□□ -1.73
DEPDC1-204ENST00000489862 ADCY3O60266 1144 aa4.24□□□□□ -1.73
DEPDC1-204ENST00000489862 CYP7B1O75881 506 aa4.24□□□□□ -1.73
DEPDC1-204ENST00000489862 CKMP06732 381 aa4.24□□□□□ -1.73
DEPDC1-204ENST00000489862 COL6A1P12109 1028 aa4.24□□□□□ -1.73
DEPDC1-204ENST00000489862 FAHP16930 419 aa4.24□□□□□ -1.73
DEPDC1-204ENST00000489862 HABP4Q5JVS0 413 aaKnown RBP4.24□□□□□ -1.73
DEPDC1-204ENST00000489862 ODR4Q5SWX8 454 aa4.24□□□□□ -1.73
DEPDC1-204ENST00000489862 FOXB2Q5VYV0 432 aa4.24□□□□□ -1.73
DEPDC1-204ENST00000489862 IGFL4Q6B9Z1 124 aa4.24□□□□□ -1.73
DEPDC1-204ENST00000489862 VASNQ6EMK4 673 aa4.24□□□□□ -1.73
DEPDC1-204ENST00000489862 DTX3Q8N9I9 347 aa4.24□□□□□ -1.73
DEPDC1-204ENST00000489862 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms