RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 CSPG5O95196 566 aa14.15□□□□□ -0.14
CPSF3-204ENST00000489403 ATG7O95352 703 aa14.15□□□□□ -0.14
CPSF3-204ENST00000489403 FOSP01100 380 aaPredicted RBP14.15□□□□□ -0.14
CPSF3-204ENST00000489403 MMP1P03956 469 aa14.15□□□□□ -0.14
CPSF3-204ENST00000489403 LTBRP36941 435 aa14.15□□□□□ -0.14
CPSF3-204ENST00000489403 STAT5BP51692 787 aa14.15□□□□□ -0.14
CPSF3-204ENST00000489403 HYAL1Q12794 435 aa14.15□□□□□ -0.14
CPSF3-204ENST00000489403 CTC1Q2NKJ3 1217 aa14.15□□□□□ -0.14
CPSF3-204ENST00000489403 ADCK5Q3MIX3 580 aa14.15□□□□□ -0.14
CPSF3-204ENST00000489403 RNF20Q5VTR2 975 aa14.15□□□□□ -0.14
CPSF3-204ENST00000489403 TEX2Q8IWB9 1127 aa14.15□□□□□ -0.14
CPSF3-204ENST00000489403 TNPO1Q92973 898 aaKnown RBP14.15□□□□□ -0.14
CPSF3-204ENST00000489403 FTHL17Q9BXU8 183 aa14.15□□□□□ -0.14
CPSF3-204ENST00000489403 TMEM260Q9NX78 707 aa14.15□□□□□ -0.14
CPSF3-204ENST00000489403 BARHL2Q9NY43 387 aa14.15□□□□□ -0.14
CPSF3-204ENST00000489403 PADI3Q9ULW8 664 aa14.15□□□□□ -0.14
CPSF3-204ENST00000489403 ARIH1Q9Y4X5 557 aaPredicted RBP14.15□□□□□ -0.14
CPSF3-204ENST00000489403 MRPL42Q9Y6G3 142 aaKnown RBP14.15□□□□□ -0.14
CPSF3-204ENST00000489403 MYO7AQ13402 2215 aa14.14□□□□□ -0.15
CPSF3-204ENST00000489403 IGKV6D-21A0A0A0MT36 114 aa14.14□□□□□ -0.15
CPSF3-204ENST00000489403 SMIM35A0A1B0GVV1 85 aa14.14□□□□□ -0.15
CPSF3-204ENST00000489403 POTEB3A0JP26 581 aa14.14□□□□□ -0.15
CPSF3-204ENST00000489403 SMCO2A6NFE2 343 aa14.14□□□□□ -0.15
CPSF3-204ENST00000489403 GOLGA8AA7E2F4 631 aa14.14□□□□□ -0.15
CPSF3-204ENST00000489403 GOLGA8BA8MQT2 603 aa14.14□□□□□ -0.15
CPSF3-204ENST00000489403 hCG_1984214I3L0E3 225 aa14.14□□□□□ -0.15
CPSF3-204ENST00000489403 MEIS1O00470 390 aa14.14□□□□□ -0.15
CPSF3-204ENST00000489403 CDC27P30260 824 aa14.14□□□□□ -0.15
CPSF3-204ENST00000489403 GTF2F1P35269 517 aaKnown RBP eCLIP14.14□□□□□ -0.15
CPSF3-204ENST00000489403 SREBF1P36956 1147 aa14.14□□□□□ -0.15
CPSF3-204ENST00000489403 AP3B2Q13367 1082 aa14.14□□□□□ -0.15
CPSF3-204ENST00000489403 BMP2KLQ5H9B9 411 aa14.14□□□□□ -0.15
CPSF3-204ENST00000489403 POTEBQ6S5H4 581 aa14.14□□□□□ -0.15
CPSF3-204ENST00000489403 MTHFD1LQ6UB35 978 aa14.14□□□□□ -0.15
CPSF3-204ENST00000489403 DHX32Q7L7V1 743 aaKnown RBP14.14□□□□□ -0.15
CPSF3-204ENST00000489403 NPAS4Q8IUM7 802 aa14.14□□□□□ -0.15
CPSF3-204ENST00000489403 CMTR2Q8IYT2 770 aaKnown RBP14.14□□□□□ -0.15
CPSF3-204ENST00000489403 RASEFQ8IZ41 740 aa14.14□□□□□ -0.15
CPSF3-204ENST00000489403 ZNF713Q8N859 430 aaPredicted RBP14.14□□□□□ -0.15
CPSF3-204ENST00000489403 PLVAPQ9BX97 442 aa14.14□□□□□ -0.15
CPSF3-204ENST00000489403 CELF4Q9BZC1 486 aaKnown RBP14.14□□□□□ -0.15
CPSF3-204ENST00000489403 ALG13Q9NP73 1137 aaKnown RBP14.14□□□□□ -0.15
CPSF3-204ENST00000489403 FAM217BQ9NTX9 383 aaPredicted RBP14.14□□□□□ -0.15
CPSF3-204ENST00000489403 V9GY48 417 aaPredicted RBP14.14□□□□□ -0.15
CPSF3-204ENST00000489403 KDM3AQ9Y4C1 1321 aa14.14□□□□□ -0.15
CPSF3-204ENST00000489403 C5orf42Q9H799 3197 aa14.13□□□□□ -0.15
CPSF3-204ENST00000489403 KLF18A0A0U1RQI7 1052 aa14.13□□□□□ -0.15
CPSF3-204ENST00000489403 DDX39AO00148 427 aaKnown RBP14.13□□□□□ -0.15
CPSF3-204ENST00000489403 NCK2O43639 380 aa14.13□□□□□ -0.15
CPSF3-204ENST00000489403 CCNE2O96020 404 aa14.13□□□□□ -0.15
CPSF3-204ENST00000489403 ZP2Q05996 745 aa14.13□□□□□ -0.15
CPSF3-204ENST00000489403 DLX2Q07687 328 aaPredicted RBP14.13□□□□□ -0.15
CPSF3-204ENST00000489403 PAK2Q13177 524 aa14.13□□□□□ -0.15
CPSF3-204ENST00000489403 CAMK1Q14012 370 aa14.13□□□□□ -0.15
CPSF3-204ENST00000489403 TSGA10IPQ3SY00 556 aa14.13□□□□□ -0.15
CPSF3-204ENST00000489403 PAN2Q504Q3 1202 aaKnown RBP14.13□□□□□ -0.15
CPSF3-204ENST00000489403 P2RX5Q93086 422 aa14.13□□□□□ -0.15
CPSF3-204ENST00000489403 TMX1Q9H3N1 280 aa14.13□□□□□ -0.15
CPSF3-204ENST00000489403 PRKAG3Q9UGI9 489 aa14.13□□□□□ -0.15
CPSF3-204ENST00000489403 PLAGL2Q9UPG8 496 aa14.13□□□□□ -0.15
CPSF3-204ENST00000489403 FAM50BQ9Y247 325 aa14.13□□□□□ -0.15
CPSF3-204ENST00000489403 PLXNA4Q9HCM2 1894 aa14.12□□□□□ -0.15
CPSF3-204ENST00000489403 PRR33A8MZF0 331 aa14.12□□□□□ -0.15
CPSF3-204ENST00000489403 FAM86B1E9PN63 330 aa14.12□□□□□ -0.15
CPSF3-204ENST00000489403 LINC01565O15544 149 aa14.12□□□□□ -0.15
CPSF3-204ENST00000489403 TBX10O75333 385 aa14.12□□□□□ -0.15
CPSF3-204ENST00000489403 ITGB1P05556 798 aa14.12□□□□□ -0.15
CPSF3-204ENST00000489403 FAM86B2P0C5J1 330 aa14.12□□□□□ -0.15
CPSF3-204ENST00000489403 STAG3L1P0CL83 205 aa14.12□□□□□ -0.15
CPSF3-204ENST00000489403 SCG2P13521 617 aa14.12□□□□□ -0.15
CPSF3-204ENST00000489403 DNAJB1P25685 340 aa14.12□□□□□ -0.15
CPSF3-204ENST00000489403 KLRC1P26715 233 aa14.12□□□□□ -0.15
CPSF3-204ENST00000489403 ZNF76P36508 570 aa14.12□□□□□ -0.15
CPSF3-204ENST00000489403 SLC26A2P50443 739 aa14.12□□□□□ -0.15
CPSF3-204ENST00000489403 KRT76Q01546 638 aa14.12□□□□□ -0.15
CPSF3-204ENST00000489403 CLUL1Q15846 466 aa14.12□□□□□ -0.15
CPSF3-204ENST00000489403 TMEM266Q2M3C6 531 aa14.12□□□□□ -0.15
CPSF3-204ENST00000489403 ABHD15Q6UXT9 468 aa14.12□□□□□ -0.15
CPSF3-204ENST00000489403 NIPA1Q7RTP0 329 aa14.12□□□□□ -0.15
CPSF3-204ENST00000489403 CCDC60Q8IWA6 550 aaPredicted RBP14.12□□□□□ -0.15
CPSF3-204ENST00000489403 ADHFE1Q8IWW8 467 aa14.12□□□□□ -0.15
CPSF3-204ENST00000489403 NME8Q8N427 588 aa14.12□□□□□ -0.15
CPSF3-204ENST00000489403 GLT8D2Q9H1C3 349 aa14.12□□□□□ -0.15
CPSF3-204ENST00000489403 FNDC1Q4ZHG4 1894 aaPredicted RBP14.12□□□□□ -0.15
CPSF3-204ENST00000489403 IGLV3-22A0A075B6J6 115 aa14.11□□□□□ -0.15
CPSF3-204ENST00000489403 C19orf67A6NJJ6 358 aa14.11□□□□□ -0.15
CPSF3-204ENST00000489403 BACH1O14867 736 aa14.11□□□□□ -0.15
CPSF3-204ENST00000489403 DHX15O43143 795 aaKnown RBP14.11□□□□□ -0.15
CPSF3-204ENST00000489403 MBTPS2O43462 519 aa14.11□□□□□ -0.15
CPSF3-204ENST00000489403 HBP1O60381 514 aa14.11□□□□□ -0.15
CPSF3-204ENST00000489403 MGEA5O60502 916 aa14.11□□□□□ -0.15
CPSF3-204ENST00000489403 ALADP13716 330 aa14.11□□□□□ -0.15
CPSF3-204ENST00000489403 IRS1P35568 1242 aa14.11□□□□□ -0.15
CPSF3-204ENST00000489403 GATMP50440 423 aa14.11□□□□□ -0.15
CPSF3-204ENST00000489403 RCAN1P53805 252 aa14.11□□□□□ -0.15
CPSF3-204ENST00000489403 NAALADL2Q58DX5 795 aa14.11□□□□□ -0.15
CPSF3-204ENST00000489403 JAKMIP3Q5VZ66 844 aa14.11□□□□□ -0.15
CPSF3-204ENST00000489403 PLA2G4DQ86XP0 818 aa14.11□□□□□ -0.15
CPSF3-204ENST00000489403 KLHL23Q8NBE8 558 aa14.11□□□□□ -0.15
CPSF3-204ENST00000489403 SPPL3Q8TCT6 385 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms