RNA–Protein interactions for RNA: ENST00000473565.5

CLK1-210, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 3,208 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-210ENST00000473565 CCDC40Q4G0X9 1142 aa6.89□□□□□ -1.31
CLK1-210ENST00000473565 NIPA1Q7RTP0 329 aa6.89□□□□□ -1.31
CLK1-210ENST00000473565 NLRX1Q86UT6 975 aa6.89□□□□□ -1.31
CLK1-210ENST00000473565 NOC3LQ8WTT2 800 aaKnown RBP6.89□□□□□ -1.31
CLK1-210ENST00000473565 TSC1Q92574 1164 aa6.89□□□□□ -1.31
CLK1-210ENST00000473565 INPP4AQ96PE3 977 aaPredicted RBP6.89□□□□□ -1.31
CLK1-210ENST00000473565 TSG101Q99816 390 aa6.89□□□□□ -1.31
CLK1-210ENST00000473565 AGPAT5Q9NUQ2 364 aa6.89□□□□□ -1.31
CLK1-210ENST00000473565 MAP3K20Q9NYL2 800 aaKnown RBP6.89□□□□□ -1.31
CLK1-210ENST00000473565 SOWAHBA6NEL2 793 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 TISP43B9A030 160 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 SLC26A4O43511 780 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 KCNA2P16389 499 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 KRT9P35527 623 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 QARSP47897 775 aaKnown RBP6.88□□□□□ -1.31
CLK1-210ENST00000473565 MAPK7Q13164 816 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 PPIL2Q13356 520 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 CRACR2AQ9BSW2 395 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 ZSWIM4Q9H7M6 989 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 RRAGCQ9HB90 399 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 TBC1D22BQ9NU19 505 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 RBPJLQ9UBG7 517 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 MYPNQ86TC9 1320 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 IQCA1LA6NCM1 817 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 ZNF862O60290 1169 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 NR2F2P24468 414 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 HOXA7P31268 230 aaPredicted RBP6.88□□□□□ -1.31
CLK1-210ENST00000473565 YWHABP31946 246 aaKnown RBP6.88□□□□□ -1.31
CLK1-210ENST00000473565 PPP1R2P41236 205 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 CASP4P49662 377 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 RARRES1P49788 294 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 ERVK-24P63145 666 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 FKBP3Q00688 224 aaKnown RBP6.88□□□□□ -1.31
CLK1-210ENST00000473565 ADAM9Q13443 819 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 VWA3BQ502W6 1294 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 ODR4Q5SWX8 454 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 GPAT2Q6NUI2 795 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 CYFIP1Q7L576 1253 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 EPM2AIP1Q7L775 607 aaPredicted RBP6.88□□□□□ -1.31
CLK1-210ENST00000473565 ARMC9Q7Z3E5 817 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 RIOX2Q8IUF8 465 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 FAM114A1Q8IWE2 563 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 PROCA1Q8NCQ7 364 aaPredicted RBP6.88□□□□□ -1.31
CLK1-210ENST00000473565 SLC10A4Q96EP9 437 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 FIZ1Q96SL8 496 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 CHP1Q99653 195 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 NDST4Q9H3R1 872 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 PARVGQ9HBI0 331 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 FAM207AQ9NSI2 230 aaPredicted RBP6.88□□□□□ -1.31
CLK1-210ENST00000473565 GABBR1Q9UBS5 961 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 AGTPBP1Q9UPW5 1226 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 KCNH4Q9UQ05 1017 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 COL4A3BPQ9Y5P4 624 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 STK24Q9Y6E0 443 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 A0A0G2JMZ2 1700 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 SCN4AP35499 1836 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 ZMYM2Q9UBW7 1377 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 DNAH12Q6ZR08 3092 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 WDR64B1ANS9 1081 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 POTEB2H3BUK9 544 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 TULP1O00294 542 aaPredicted RBP6.88□□□□□ -1.31
CLK1-210ENST00000473565 CXCL11O14625 94 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 NRDCO43847 1150 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 TRIM21P19474 475 aaKnown RBP6.88□□□□□ -1.31
CLK1-210ENST00000473565 DNM2P50570 870 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 KNOP1Q1ED39 458 aaKnown RBP6.88□□□□□ -1.31
CLK1-210ENST00000473565 XKR9Q5GH70 373 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 TMEM63BQ5T3F8 832 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 SWSAP1Q6NVH7 229 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 NYAP1Q6ZVC0 841 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 CCDC60Q8IWA6 550 aaPredicted RBP6.88□□□□□ -1.31
CLK1-210ENST00000473565 FAM178BQ8IXR5 827 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 ACRBPQ8NEB7 543 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 CCDC112Q8NEF3 446 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 CCDC43Q96MW1 224 aaKnown RBP6.88□□□□□ -1.31
CLK1-210ENST00000473565 KIFC3Q9BVG8 833 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 PORCNQ9H237 461 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 ABHD10Q9NUJ1 306 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 PNMA2Q9UL42 364 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 PPP2R2CQ9Y2T4 447 aa6.88□□□□□ -1.31
CLK1-210ENST00000473565 ITIH6Q6UXX5 1313 aa6.87□□□□□ -1.31
CLK1-210ENST00000473565 ARHGAP6O43182 974 aa6.87□□□□□ -1.31
CLK1-210ENST00000473565 TGFB1I1O43294 461 aa6.87□□□□□ -1.31
CLK1-210ENST00000473565 ABL1P00519 1130 aa6.87□□□□□ -1.31
CLK1-210ENST00000473565 ALDH5A1P51649 535 aaPredicted RBP6.87□□□□□ -1.31
CLK1-210ENST00000473565 PTPN14Q15678 1187 aa6.87□□□□□ -1.31
CLK1-210ENST00000473565 LDLRAD1Q5T700 205 aa6.87□□□□□ -1.31
CLK1-210ENST00000473565 ANO5Q75V66 913 aa6.87□□□□□ -1.31
CLK1-210ENST00000473565 REXO1L1PQ8IX06 675 aa6.87□□□□□ -1.31
CLK1-210ENST00000473565 CHST13Q8NET6 341 aa6.87□□□□□ -1.31
CLK1-210ENST00000473565 GPRASP2Q96D09 838 aa6.87□□□□□ -1.31
CLK1-210ENST00000473565 GTPBP4Q9BZE4 634 aaKnown RBP6.87□□□□□ -1.31
CLK1-210ENST00000473565 MMRN2Q9H8L6 949 aa6.87□□□□□ -1.31
CLK1-210ENST00000473565 JPH1Q9HDC5 661 aaPredicted RBP6.87□□□□□ -1.31
CLK1-210ENST00000473565 TFR2Q9UP52 801 aa6.87□□□□□ -1.31
CLK1-210ENST00000473565 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.87□□□□□ -1.312e-27■■■■■ 27.1
CLK1-210ENST00000473565 RBAK-RBAKDNI3L0D1 243 aa6.87□□□□□ -1.31
CLK1-210ENST00000473565 GRIN3BO60391 1043 aa6.87□□□□□ -1.31
CLK1-210ENST00000473565 STX10O60499 249 aa6.87□□□□□ -1.31
CLK1-210ENST00000473565 ACTR2P61160 394 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms