RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 PCDHA2Q9Y5H9 948 aa24■■□□□ 1.43
COL9A3-207ENST00000467819 H3BQ06 376 aaPredicted RBP23.99■■□□□ 1.43
COL9A3-207ENST00000467819 BACH1O14867 736 aa23.99■■□□□ 1.43
COL9A3-207ENST00000467819 HMGB1P09429 215 aaKnown RBP23.99■■□□□ 1.43
COL9A3-207ENST00000467819 LINC00271P0C7V0 271 aa23.99■■□□□ 1.43
COL9A3-207ENST00000467819 IL9P15248 144 aa23.99■■□□□ 1.43
COL9A3-207ENST00000467819 BMPR1AP36894 532 aa23.99■■□□□ 1.43
COL9A3-207ENST00000467819 PLA2G4DQ86XP0 818 aa23.99■■□□□ 1.43
COL9A3-207ENST00000467819 UIMC1Q96RL1 719 aa23.99■■□□□ 1.43
COL9A3-207ENST00000467819 RWDD3Q9Y3V2 267 aa23.99■■□□□ 1.43
COL9A3-207ENST00000467819 C5orf67F2Z3F1 127 aa23.98■■□□□ 1.43
COL9A3-207ENST00000467819 CSPG5O95196 566 aa23.98■■□□□ 1.43
COL9A3-207ENST00000467819 ATG7O95352 703 aa23.98■■□□□ 1.43
COL9A3-207ENST00000467819 CCNE2O96020 404 aa23.98■■□□□ 1.43
COL9A3-207ENST00000467819 RB1P06400 928 aa23.98■■□□□ 1.43
COL9A3-207ENST00000467819 RCAN1P53805 252 aa23.98■■□□□ 1.43
COL9A3-207ENST00000467819 PFKFB3Q16875 520 aaPredicted RBP23.98■■□□□ 1.43
COL9A3-207ENST00000467819 MTHFD1LQ6UB35 978 aa23.98■■□□□ 1.43
COL9A3-207ENST00000467819 NIPA1Q7RTP0 329 aa23.98■■□□□ 1.43
COL9A3-207ENST00000467819 ZNF689Q96CS4 500 aaPredicted RBP23.98■■□□□ 1.43
COL9A3-207ENST00000467819 C11orf84Q9BUA3 381 aaPredicted RBP23.98■■□□□ 1.43
COL9A3-207ENST00000467819 PADI3Q9ULW8 664 aa23.98■■□□□ 1.43
COL9A3-207ENST00000467819 FAM86B1E9PN63 330 aa23.97■■□□□ 1.43
COL9A3-207ENST00000467819 GRM6O15303 877 aa23.97■■□□□ 1.43
COL9A3-207ENST00000467819 DGKIO75912 1065 aa23.97■■□□□ 1.43
COL9A3-207ENST00000467819 FAM86B2P0C5J1 330 aa23.97■■□□□ 1.43
COL9A3-207ENST00000467819 SCG2P13521 617 aa23.97■■□□□ 1.43
COL9A3-207ENST00000467819 SLC26A2P50443 739 aa23.97■■□□□ 1.43
COL9A3-207ENST00000467819 PAK2Q13177 524 aa23.97■■□□□ 1.43
COL9A3-207ENST00000467819 FAM160B1Q5W0V3 765 aa23.97■■□□□ 1.43
COL9A3-207ENST00000467819 Q6ZUG5 572 aa23.97■■□□□ 1.43
COL9A3-207ENST00000467819 RTN4RL1Q86UN2 441 aaPredicted RBP23.97■■□□□ 1.43
COL9A3-207ENST00000467819 CCDC60Q8IWA6 550 aaPredicted RBP23.97■■□□□ 1.43
COL9A3-207ENST00000467819 FAM178BQ8IXR5 827 aa23.97■■□□□ 1.43
COL9A3-207ENST00000467819 NEK9Q8TD19 979 aa23.97■■□□□ 1.43
COL9A3-207ENST00000467819 CLP1Q92989 425 aaKnown RBP23.97■■□□□ 1.43
COL9A3-207ENST00000467819 PABPC5Q96DU9 382 aaKnown RBP23.97■■□□□ 1.43
COL9A3-207ENST00000467819 JAKMIP1Q96N16 626 aaKnown RBP23.97■■□□□ 1.43
COL9A3-207ENST00000467819 FTHL17Q9BXU8 183 aa23.97■■□□□ 1.43
COL9A3-207ENST00000467819 CELF4Q9BZC1 486 aaKnown RBP23.97■■□□□ 1.43
COL9A3-207ENST00000467819 IGSF9BQ9UPX0 1349 aa23.97■■□□□ 1.43
COL9A3-207ENST00000467819 SQORQ9Y6N5 450 aa23.97■■□□□ 1.43
COL9A3-207ENST00000467819 IGKV6D-21A0A0A0MT36 114 aa23.96■■□□□ 1.43
COL9A3-207ENST00000467819 CCDC196A0A1B0GTZ2 297 aa23.96■■□□□ 1.43
COL9A3-207ENST00000467819 SMIM35A0A1B0GVV1 85 aa23.96■■□□□ 1.43
COL9A3-207ENST00000467819 ADAMTS3O15072 1205 aa23.96■■□□□ 1.43
COL9A3-207ENST00000467819 IBSPP21815 317 aaPredicted RBP23.96■■□□□ 1.43
COL9A3-207ENST00000467819 KRT76Q01546 638 aa23.96■■□□□ 1.43
COL9A3-207ENST00000467819 ABHD15Q6UXT9 468 aa23.96■■□□□ 1.43
COL9A3-207ENST00000467819 BRF1Q92994 677 aa23.96■■□□□ 1.43
COL9A3-207ENST00000467819 CLDND1Q9NY35 253 aa23.96■■□□□ 1.43
COL9A3-207ENST00000467819 GINS2Q9Y248 185 aa23.96■■□□□ 1.43
COL9A3-207ENST00000467819 GRXCR2A6NFK2 248 aa23.95■■□□□ 1.42
COL9A3-207ENST00000467819 HBP1O60381 514 aa23.95■■□□□ 1.42
COL9A3-207ENST00000467819 KLRC1P26715 233 aa23.95■■□□□ 1.42
COL9A3-207ENST00000467819 TMEM266Q2M3C6 531 aa23.95■■□□□ 1.42
COL9A3-207ENST00000467819 PAN2Q504Q3 1202 aaKnown RBP23.95■■□□□ 1.42
COL9A3-207ENST00000467819 PDXDC2PQ6P474 469 aa23.95■■□□□ 1.42
COL9A3-207ENST00000467819 NPAS4Q8IUM7 802 aa23.95■■□□□ 1.42
COL9A3-207ENST00000467819 ATP8B4Q8TF62 1192 aa23.95■■□□□ 1.42
COL9A3-207ENST00000467819 LRFN3Q9BTN0 628 aa23.95■■□□□ 1.42
COL9A3-207ENST00000467819 LMAN2LQ9H0V9 348 aa23.95■■□□□ 1.42
COL9A3-207ENST00000467819 ZNF302Q9NR11 478 aa23.95■■□□□ 1.42
COL9A3-207ENST00000467819 MRPL42Q9Y6G3 142 aaKnown RBP23.95■■□□□ 1.42
COL9A3-207ENST00000467819 FNDC1Q4ZHG4 1894 aaPredicted RBP23.95■■□□□ 1.42
COL9A3-207ENST00000467819 PLXNA4Q9HCM2 1894 aa23.94■■□□□ 1.42
COL9A3-207ENST00000467819 IGLV3-22A0A075B6J6 115 aa23.94■■□□□ 1.42
COL9A3-207ENST00000467819 IPO5O00410 1097 aaKnown RBP23.94■■□□□ 1.42
COL9A3-207ENST00000467819 SSTR3P32745 418 aaPredicted RBP23.94■■□□□ 1.42
COL9A3-207ENST00000467819 TMEM31Q5JXX7 168 aa23.94■■□□□ 1.42
COL9A3-207ENST00000467819 BLOC1S2Q6QNY1 142 aa23.94■■□□□ 1.42
COL9A3-207ENST00000467819 GJD3Q8N144 294 aa23.94■■□□□ 1.42
COL9A3-207ENST00000467819 NME8Q8N427 588 aa23.94■■□□□ 1.42
COL9A3-207ENST00000467819 C6orf50Q9HD87 102 aa23.94■■□□□ 1.42
COL9A3-207ENST00000467819 SNX14Q9Y5W7 946 aa23.94■■□□□ 1.42
COL9A3-207ENST00000467819 KDM3AQ9Y4C1 1321 aa23.93■■□□□ 1.42
COL9A3-207ENST00000467819 ESYT2A0FGR8 921 aa23.93■■□□□ 1.42
COL9A3-207ENST00000467819 FAM86C2PA6NEL3 165 aa23.93■■□□□ 1.42
COL9A3-207ENST00000467819 DHX15O43143 795 aaKnown RBP23.93■■□□□ 1.42
COL9A3-207ENST00000467819 CYP3A4P08684 503 aa23.93■■□□□ 1.42
COL9A3-207ENST00000467819 STAG3L1P0CL83 205 aa23.93■■□□□ 1.42
COL9A3-207ENST00000467819 NFX1Q12986 1120 aaKnown RBP23.93■■□□□ 1.42
COL9A3-207ENST00000467819 PUS10Q3MIT2 529 aaKnown RBP23.93■■□□□ 1.42
COL9A3-207ENST00000467819 SWSAP1Q6NVH7 229 aa23.93■■□□□ 1.42
COL9A3-207ENST00000467819 MIS18BP1Q6P0N0 1132 aa23.93■■□□□ 1.42
COL9A3-207ENST00000467819 CKAP2LQ8IYA6 745 aa23.93■■□□□ 1.42
COL9A3-207ENST00000467819 CMTR2Q8IYT2 770 aaKnown RBP23.93■■□□□ 1.42
COL9A3-207ENST00000467819 REXO1Q8N1G1 1221 aaKnown RBP23.93■■□□□ 1.42
COL9A3-207ENST00000467819 CRYGNQ8WXF5 182 aa23.93■■□□□ 1.42
COL9A3-207ENST00000467819 KCNB2Q92953 911 aa23.93■■□□□ 1.42
COL9A3-207ENST00000467819 PHKBQ93100 1093 aa23.93■■□□□ 1.42
COL9A3-207ENST00000467819 ZNF577Q9BSK1 485 aa23.93■■□□□ 1.42
COL9A3-207ENST00000467819 ZMYND12Q9H0C1 365 aa23.93■■□□□ 1.42
COL9A3-207ENST00000467819 ALG13Q9NP73 1137 aaKnown RBP23.93■■□□□ 1.42
COL9A3-207ENST00000467819 COL1A2P08123 1366 aa23.92■■□□□ 1.42
COL9A3-207ENST00000467819 PPFIA3O75145 1194 aa23.92■■□□□ 1.42
COL9A3-207ENST00000467819 HYAL1Q12794 435 aa23.92■■□□□ 1.42
COL9A3-207ENST00000467819 COL19A1Q14993 1142 aa23.92■■□□□ 1.42
COL9A3-207ENST00000467819 PKN1Q16512 942 aa23.92■■□□□ 1.42
COL9A3-207ENST00000467819 TRMT1LQ7Z2T5 733 aaKnown RBP23.92■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms