RNA–Protein interactions for RNA: ENST00000461187.5

SMPD4-216, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 3

Gene SMPD4, Length 659 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-216ENST00000461187 CRIPAKQ8N1N5 446 aa16.77■□□□□ 0.28
SMPD4-216ENST00000461187 TNPO1Q92973 898 aaKnown RBP16.77■□□□□ 0.28
SMPD4-216ENST00000461187 PABPC5Q96DU9 382 aaKnown RBP16.77■□□□□ 0.28
SMPD4-216ENST00000461187 LRFN3Q9BTN0 628 aa16.77■□□□□ 0.28
SMPD4-216ENST00000461187 RWDD3Q9Y3V2 267 aa16.77■□□□□ 0.28
SMPD4-216ENST00000461187 TRPV2Q9Y5S1 764 aa16.77■□□□□ 0.28
SMPD4-216ENST00000461187 IGKV6D-21A0A0A0MT36 114 aa16.76■□□□□ 0.27
SMPD4-216ENST00000461187 POTEB3A0JP26 581 aa16.76■□□□□ 0.27
SMPD4-216ENST00000461187 H3BQ06 376 aaPredicted RBP16.76■□□□□ 0.27
SMPD4-216ENST00000461187 GRM6O15303 877 aa16.76■□□□□ 0.27
SMPD4-216ENST00000461187 CCNE2O96020 404 aa16.76■□□□□ 0.27
SMPD4-216ENST00000461187 RCAN1P53805 252 aa16.76■□□□□ 0.27
SMPD4-216ENST00000461187 KRT32Q14532 448 aa16.76■□□□□ 0.27
SMPD4-216ENST00000461187 POTEBQ6S5H4 581 aa16.76■□□□□ 0.27
SMPD4-216ENST00000461187 NIPA1Q7RTP0 329 aa16.76■□□□□ 0.27
SMPD4-216ENST00000461187 C11orf84Q9BUA3 381 aaPredicted RBP16.76■□□□□ 0.27
SMPD4-216ENST00000461187 GLT8D2Q9H1C3 349 aa16.76■□□□□ 0.27
SMPD4-216ENST00000461187 C11orf16Q9NQ32 467 aa16.76■□□□□ 0.27
SMPD4-216ENST00000461187 TRIOO75962 3097 aa16.76■□□□□ 0.27
SMPD4-216ENST00000461187 IGSF9BQ9UPX0 1349 aa16.75■□□□□ 0.27
SMPD4-216ENST00000461187 KDM3AQ9Y4C1 1321 aa16.75■□□□□ 0.27
SMPD4-216ENST00000461187 SMIM35A0A1B0GVV1 85 aa16.75■□□□□ 0.27
SMPD4-216ENST00000461187 PI4K2BG5E9Z4 385 aa16.75■□□□□ 0.27
SMPD4-216ENST00000461187 M0QZ92 97 aa16.75■□□□□ 0.27
SMPD4-216ENST00000461187 SLC26A2P50443 739 aa16.75■□□□□ 0.27
SMPD4-216ENST00000461187 BTG3Q14201 252 aaPredicted RBP16.75■□□□□ 0.27
SMPD4-216ENST00000461187 PUS10Q3MIT2 529 aaKnown RBP16.75■□□□□ 0.27
SMPD4-216ENST00000461187 TMEM31Q5JXX7 168 aa16.75■□□□□ 0.27
SMPD4-216ENST00000461187 MTHFD1LQ6UB35 978 aa16.75■□□□□ 0.27
SMPD4-216ENST00000461187 ABHD15Q6UXT9 468 aa16.75■□□□□ 0.27
SMPD4-216ENST00000461187 FTHL17Q9BXU8 183 aa16.75■□□□□ 0.27
SMPD4-216ENST00000461187 CELF4Q9BZC1 486 aaKnown RBP16.75■□□□□ 0.27
SMPD4-216ENST00000461187 LMAN2LQ9H0V9 348 aa16.75■□□□□ 0.27
SMPD4-216ENST00000461187 PADI3Q9ULW8 664 aa16.75■□□□□ 0.27
SMPD4-216ENST00000461187 MUC6Q6W4X9 2439 aa16.74■□□□□ 0.27
SMPD4-216ENST00000461187 IGLV3-22A0A075B6J6 115 aa16.74■□□□□ 0.27
SMPD4-216ENST00000461187 FAM86B1E9PN63 330 aa16.74■□□□□ 0.27
SMPD4-216ENST00000461187 DDX39AO00148 427 aaKnown RBP16.74■□□□□ 0.27
SMPD4-216ENST00000461187 ADAMTS3O15072 1205 aa16.74■□□□□ 0.27
SMPD4-216ENST00000461187 DHX15O43143 795 aaKnown RBP16.74■□□□□ 0.27
SMPD4-216ENST00000461187 GPR37L1O60883 481 aa16.74■□□□□ 0.27
SMPD4-216ENST00000461187 CDC45O75419 566 aa16.74■□□□□ 0.27
SMPD4-216ENST00000461187 HMGB1P09429 215 aaKnown RBP16.74■□□□□ 0.27
SMPD4-216ENST00000461187 FAM86B2P0C5J1 330 aa16.74■□□□□ 0.27
SMPD4-216ENST00000461187 ADD1P35611 737 aaKnown RBP16.74■□□□□ 0.27
SMPD4-216ENST00000461187 ZNF76P36508 570 aa16.74■□□□□ 0.27
SMPD4-216ENST00000461187 LTBRP36941 435 aa16.74■□□□□ 0.27
SMPD4-216ENST00000461187 PFKFB3Q16875 520 aaPredicted RBP16.74■□□□□ 0.27
SMPD4-216ENST00000461187 JAKMIP3Q5VZ66 844 aa16.74■□□□□ 0.27
SMPD4-216ENST00000461187 GJD3Q8N144 294 aa16.74■□□□□ 0.27
SMPD4-216ENST00000461187 NME8Q8N427 588 aa16.74■□□□□ 0.27
SMPD4-216ENST00000461187 CRYGNQ8WXF5 182 aa16.74■□□□□ 0.27
SMPD4-216ENST00000461187 HBP1O60381 514 aa16.73■□□□□ 0.27
SMPD4-216ENST00000461187 CYP3A4P08684 503 aa16.73■□□□□ 0.27
SMPD4-216ENST00000461187 SCG2P13521 617 aa16.73■□□□□ 0.27
SMPD4-216ENST00000461187 CPA1P15085 419 aa16.73■□□□□ 0.27
SMPD4-216ENST00000461187 KLRC1P26715 233 aa16.73■□□□□ 0.27
SMPD4-216ENST00000461187 KRT76Q01546 638 aa16.73■□□□□ 0.27
SMPD4-216ENST00000461187 APOBRQ0VD83 1088 aa16.73■□□□□ 0.27
SMPD4-216ENST00000461187 PAK2Q13177 524 aa16.73■□□□□ 0.27
SMPD4-216ENST00000461187 CTC1Q2NKJ3 1217 aa16.73■□□□□ 0.27
SMPD4-216ENST00000461187 EP400NLQ6ZTU2 488 aa16.73■□□□□ 0.27
SMPD4-216ENST00000461187 PLA2G4DQ86XP0 818 aa16.73■□□□□ 0.27
SMPD4-216ENST00000461187 NPAS4Q8IUM7 802 aa16.73■□□□□ 0.27
SMPD4-216ENST00000461187 CCDC60Q8IWA6 550 aaPredicted RBP16.73■□□□□ 0.27
SMPD4-216ENST00000461187 CMTR2Q8IYT2 770 aaKnown RBP16.73■□□□□ 0.27
SMPD4-216ENST00000461187 KCNB2Q92953 911 aa16.73■□□□□ 0.27
SMPD4-216ENST00000461187 PLVAPQ9BX97 442 aa16.73■□□□□ 0.27
SMPD4-216ENST00000461187 TMX1Q9H3N1 280 aa16.73■□□□□ 0.27
SMPD4-216ENST00000461187 CLDND1Q9NY35 253 aa16.73■□□□□ 0.27
SMPD4-216ENST00000461187 NAP1L2Q9ULW6 460 aaPredicted RBP16.73■□□□□ 0.27
SMPD4-216ENST00000461187 MRPL42Q9Y6G3 142 aaKnown RBP16.73■□□□□ 0.27
SMPD4-216ENST00000461187 ESYT2A0FGR8 921 aa16.72■□□□□ 0.27
SMPD4-216ENST00000461187 FAM86C2PA6NEL3 165 aa16.72■□□□□ 0.27
SMPD4-216ENST00000461187 BACH1O14867 736 aa16.72■□□□□ 0.27
SMPD4-216ENST00000461187 NCK2O43639 380 aa16.72■□□□□ 0.27
SMPD4-216ENST00000461187 MMP1P03956 469 aa16.72■□□□□ 0.27
SMPD4-216ENST00000461187 PLA2G5P39877 138 aa16.72■□□□□ 0.27
SMPD4-216ENST00000461187 METAP2P50579 478 aaKnown RBP eCLIP16.72■□□□□ 0.27
SMPD4-216ENST00000461187 HYAL1Q12794 435 aa16.72■□□□□ 0.27
SMPD4-216ENST00000461187 CAMK1Q14012 370 aa16.72■□□□□ 0.27
SMPD4-216ENST00000461187 TMEM266Q2M3C6 531 aa16.72■□□□□ 0.27
SMPD4-216ENST00000461187 FAM160B1Q5W0V3 765 aa16.72■□□□□ 0.27
SMPD4-216ENST00000461187 Q6ZUG5 572 aa16.72■□□□□ 0.27
SMPD4-216ENST00000461187 ATP8B4Q8TF62 1192 aa16.72■□□□□ 0.27
SMPD4-216ENST00000461187 P2RX5Q93086 422 aa16.72■□□□□ 0.27
SMPD4-216ENST00000461187 UIMC1Q96RL1 719 aa16.72■□□□□ 0.27
SMPD4-216ENST00000461187 ZMYND12Q9H0C1 365 aa16.72■□□□□ 0.27
SMPD4-216ENST00000461187 ALG13Q9NP73 1137 aaKnown RBP16.72■□□□□ 0.27
SMPD4-216ENST00000461187 PLAGL2Q9UPG8 496 aa16.72■□□□□ 0.27
SMPD4-216ENST00000461187 COL1A2P08123 1366 aa16.72■□□□□ 0.27
SMPD4-216ENST00000461187 NID2Q14112 1375 aa16.72■□□□□ 0.27
SMPD4-216ENST00000461187 ZNF318Q5VUA4 2279 aa16.71■□□□□ 0.27
SMPD4-216ENST00000461187 CCDC196A0A1B0GTZ2 297 aa16.71■□□□□ 0.27
SMPD4-216ENST00000461187 ZBTB42B2RXF5 422 aa16.71■□□□□ 0.27
SMPD4-216ENST00000461187 IPO5O00410 1097 aaKnown RBP16.71■□□□□ 0.27
SMPD4-216ENST00000461187 STAG3L1P0CL83 205 aa16.71■□□□□ 0.27
SMPD4-216ENST00000461187 ATP4AP20648 1035 aa16.71■□□□□ 0.27
SMPD4-216ENST00000461187 SSTR3P32745 418 aaPredicted RBP16.71■□□□□ 0.27
SMPD4-216ENST00000461187 FGD1P98174 961 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms