RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 HBP1O60381 514 aa15.15■□□□□ 0.02
HMGB3-204ENST00000448905 MMP1P03956 469 aa15.15■□□□□ 0.02
HMGB3-204ENST00000448905 SCG2P13521 617 aa15.15■□□□□ 0.02
HMGB3-204ENST00000448905 KLRC1P26715 233 aa15.15■□□□□ 0.02
HMGB3-204ENST00000448905 HOXD11P31277 338 aaPredicted RBP15.15■□□□□ 0.02
HMGB3-204ENST00000448905 HYAL1Q12794 435 aa15.15■□□□□ 0.02
HMGB3-204ENST00000448905 NFX1Q12986 1120 aaKnown RBP15.15■□□□□ 0.02
HMGB3-204ENST00000448905 PLCB4Q15147 1175 aa15.15■□□□□ 0.02
HMGB3-204ENST00000448905 DHX32Q7L7V1 743 aaKnown RBP15.15■□□□□ 0.02
HMGB3-204ENST00000448905 AGO4Q9HCK5 861 aaKnown RBP15.15■□□□□ 0.02
HMGB3-204ENST00000448905 ALG13Q9NP73 1137 aaKnown RBP15.15■□□□□ 0.02
HMGB3-204ENST00000448905 AAASQ9NRG9 546 aa15.15■□□□□ 0.02
HMGB3-204ENST00000448905 CCDC196A0A1B0GTZ2 297 aa15.14■□□□□ 0.01
HMGB3-204ENST00000448905 GPR182O15218 404 aa15.14■□□□□ 0.01
HMGB3-204ENST00000448905 ATG7O95352 703 aa15.14■□□□□ 0.01
HMGB3-204ENST00000448905 HMGB1P09429 215 aaKnown RBP15.14■□□□□ 0.01
HMGB3-204ENST00000448905 ARP10275 920 aa15.14■□□□□ 0.01
HMGB3-204ENST00000448905 LTBRP36941 435 aa15.14■□□□□ 0.01
HMGB3-204ENST00000448905 FGD1P98174 961 aa15.14■□□□□ 0.01
HMGB3-204ENST00000448905 ZP2Q05996 745 aa15.14■□□□□ 0.01
HMGB3-204ENST00000448905 TMEM62Q0P6H9 643 aa15.14■□□□□ 0.01
HMGB3-204ENST00000448905 AP3B2Q13367 1082 aa15.14■□□□□ 0.01
HMGB3-204ENST00000448905 ADAM15Q13444 863 aa15.14■□□□□ 0.01
HMGB3-204ENST00000448905 KRT32Q14532 448 aa15.14■□□□□ 0.01
HMGB3-204ENST00000448905 SMAD2Q15796 467 aaKnown RBP15.14■□□□□ 0.01
HMGB3-204ENST00000448905 RTN1Q16799 776 aa15.14■□□□□ 0.01
HMGB3-204ENST00000448905 APOA5Q6Q788 366 aa15.14■□□□□ 0.01
HMGB3-204ENST00000448905 MTHFD1LQ6UB35 978 aa15.14■□□□□ 0.01
HMGB3-204ENST00000448905 NIPA1Q7RTP0 329 aa15.14■□□□□ 0.01
HMGB3-204ENST00000448905 RTN4RL1Q86UN2 441 aaPredicted RBP15.14■□□□□ 0.01
HMGB3-204ENST00000448905 CYP2W1Q8TAV3 490 aa15.14■□□□□ 0.01
HMGB3-204ENST00000448905 MICAL1Q8TDZ2 1067 aa15.14■□□□□ 0.01
HMGB3-204ENST00000448905 PCYT2Q99447 389 aa15.14■□□□□ 0.01
HMGB3-204ENST00000448905 BARHL2Q9NY43 387 aa15.14■□□□□ 0.01
HMGB3-204ENST00000448905 TCEAL9Q9UHQ7 104 aa15.14■□□□□ 0.01
HMGB3-204ENST00000448905 CD207Q9UJ71 328 aa15.14■□□□□ 0.01
HMGB3-204ENST00000448905 PCDHB12Q9Y5F1 795 aa15.14■□□□□ 0.01
HMGB3-204ENST00000448905 SIP14410 1827 aa15.14■□□□□ 0.01
HMGB3-204ENST00000448905 IGSF9BQ9UPX0 1349 aa15.14■□□□□ 0.01
HMGB3-204ENST00000448905 DENND3A2RUS2 1198 aa15.13■□□□□ 0.01
HMGB3-204ENST00000448905 C19orf67A6NJJ6 358 aa15.13■□□□□ 0.01
HMGB3-204ENST00000448905 NDUFV1P49821 464 aa15.13■□□□□ 0.01
HMGB3-204ENST00000448905 IRX6P78412 446 aaPredicted RBP15.13■□□□□ 0.01
HMGB3-204ENST00000448905 ZNF484Q5JVG2 852 aa15.13■□□□□ 0.01
HMGB3-204ENST00000448905 SPOUT1Q5T280 376 aaKnown RBP15.13■□□□□ 0.01
HMGB3-204ENST00000448905 WWC2Q6AWC2 1192 aa15.13■□□□□ 0.01
HMGB3-204ENST00000448905 MIS18BP1Q6P0N0 1132 aa15.13■□□□□ 0.01
HMGB3-204ENST00000448905 CKAP2LQ8IYA6 745 aa15.13■□□□□ 0.01
HMGB3-204ENST00000448905 SPPL3Q8TCT6 385 aa15.13■□□□□ 0.01
HMGB3-204ENST00000448905 KCNH6Q9H252 994 aa15.13■□□□□ 0.01
HMGB3-204ENST00000448905 RC3H2Q9HBD1 1191 aaKnown RBP15.13■□□□□ 0.01
HMGB3-204ENST00000448905 C1orf112Q9NSG2 853 aa15.13■□□□□ 0.01
HMGB3-204ENST00000448905 TBC1D22BQ9NU19 505 aa15.13■□□□□ 0.01
HMGB3-204ENST00000448905 GINS2Q9Y248 185 aa15.13■□□□□ 0.01
HMGB3-204ENST00000448905 MRPL42Q9Y6G3 142 aaKnown RBP15.13■□□□□ 0.01
HMGB3-204ENST00000448905 KDM3AQ9Y4C1 1321 aa15.13■□□□□ 0.01
HMGB3-204ENST00000448905 FSD2A1L4K1 749 aa15.12■□□□□ 0.01
HMGB3-204ENST00000448905 STXBP3O00186 592 aa15.12■□□□□ 0.01
HMGB3-204ENST00000448905 MBTPS2O43462 519 aa15.12■□□□□ 0.01
HMGB3-204ENST00000448905 RPS6KA5O75582 802 aa15.12■□□□□ 0.01
HMGB3-204ENST00000448905 LINC00271P0C7V0 271 aa15.12■□□□□ 0.01
HMGB3-204ENST00000448905 SREBF1P36956 1147 aa15.12■□□□□ 0.01
HMGB3-204ENST00000448905 SARSP49591 514 aaKnown RBP15.12■□□□□ 0.01
HMGB3-204ENST00000448905 SMAD4Q13485 552 aaKnown RBP15.12■□□□□ 0.01
HMGB3-204ENST00000448905 CLUL1Q15846 466 aa15.12■□□□□ 0.01
HMGB3-204ENST00000448905 PAN2Q504Q3 1202 aaKnown RBP15.12■□□□□ 0.01
HMGB3-204ENST00000448905 SWSAP1Q6NVH7 229 aa15.12■□□□□ 0.01
HMGB3-204ENST00000448905 PDXDC2PQ6P474 469 aa15.12■□□□□ 0.01
HMGB3-204ENST00000448905 ABHD15Q6UXT9 468 aa15.12■□□□□ 0.01
HMGB3-204ENST00000448905 CRIPAKQ8N1N5 446 aa15.12■□□□□ 0.01
HMGB3-204ENST00000448905 KLHL23Q8NBE8 558 aa15.12■□□□□ 0.01
HMGB3-204ENST00000448905 ATP8B4Q8TF62 1192 aa15.12■□□□□ 0.01
HMGB3-204ENST00000448905 CCDC12Q8WUD4 166 aaPredicted RBP15.12■□□□□ 0.01
HMGB3-204ENST00000448905 TRAPPC12Q8WVT3 735 aa15.12■□□□□ 0.01
HMGB3-204ENST00000448905 POF1BQ8WVV4 589 aa15.12■□□□□ 0.01
HMGB3-204ENST00000448905 ZBTB10Q96DT7 871 aa15.12■□□□□ 0.01
HMGB3-204ENST00000448905 MFSD14AQ96MC6 490 aa15.12■□□□□ 0.01
HMGB3-204ENST00000448905 ANO3Q9BYT9 981 aa15.12■□□□□ 0.01
HMGB3-204ENST00000448905 ZNF302Q9NR11 478 aa15.12■□□□□ 0.01
HMGB3-204ENST00000448905 NAP1L2Q9ULW6 460 aaPredicted RBP15.12■□□□□ 0.01
HMGB3-204ENST00000448905 IGKV6D-21A0A0A0MT36 114 aa15.11■□□□□ 0.01
HMGB3-204ENST00000448905 PPFIA3O75145 1194 aa15.11■□□□□ 0.01
HMGB3-204ENST00000448905 CSPG5O95196 566 aa15.11■□□□□ 0.01
HMGB3-204ENST00000448905 ITGB1P05556 798 aa15.11■□□□□ 0.01
HMGB3-204ENST00000448905 EXOSC10Q01780 885 aaKnown RBP15.11■□□□□ 0.01
HMGB3-204ENST00000448905 UBE3AQ05086 875 aa15.11■□□□□ 0.01
HMGB3-204ENST00000448905 ITGB3BPQ13352 177 aaPredicted RBP15.11■□□□□ 0.01
HMGB3-204ENST00000448905 TSGA10IPQ3SY00 556 aa15.11■□□□□ 0.01
HMGB3-204ENST00000448905 PDE12Q6L8Q7 609 aaKnown RBP15.11■□□□□ 0.01
HMGB3-204ENST00000448905 SLC24A5Q71RS6 500 aa15.11■□□□□ 0.01
HMGB3-204ENST00000448905 PLA2G4DQ86XP0 818 aa15.11■□□□□ 0.01
HMGB3-204ENST00000448905 ZNF710Q8N1W2 664 aa15.11■□□□□ 0.01
HMGB3-204ENST00000448905 EFHBQ8N7U6 833 aa15.11■□□□□ 0.01
HMGB3-204ENST00000448905 TLE6Q9H808 572 aa15.11■□□□□ 0.01
HMGB3-204ENST00000448905 C6orf50Q9HD87 102 aa15.11■□□□□ 0.01
HMGB3-204ENST00000448905 RGS18Q9NS28 235 aa15.11■□□□□ 0.01
HMGB3-204ENST00000448905 PUF60Q9UHX1 559 aaKnown RBP15.11■□□□□ 0.01
HMGB3-204ENST00000448905 KLF18A0A0U1RQI7 1052 aa15.1■□□□□ 0.01
HMGB3-204ENST00000448905 GOLGA8AA7E2F4 631 aa15.1■□□□□ 0.01
HMGB3-204ENST00000448905 GOLGA8BA8MQT2 603 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms