RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 GLT8D2Q9H1C3 349 aa17.99■□□□□ 0.47
CLCNKA-203ENST00000439316 DDTLA6NHG4 134 aaPredicted RBP17.99■□□□□ 0.47
CLCNKA-203ENST00000439316 EIF3HO15372 352 aaKnown RBP eCLIP17.99■□□□□ 0.47
CLCNKA-203ENST00000439316 HEXIM1O94992 359 aaKnown RBP17.99■□□□□ 0.47
CLCNKA-203ENST00000439316 PRELPP51888 382 aa17.99■□□□□ 0.47
CLCNKA-203ENST00000439316 CACNB1Q02641 598 aaPredicted RBP17.99■□□□□ 0.47
CLCNKA-203ENST00000439316 ADAM9Q13443 819 aa17.99■□□□□ 0.47
CLCNKA-203ENST00000439316 DLGAP5Q15398 846 aa17.99■□□□□ 0.47
CLCNKA-203ENST00000439316 DPY19L2P1Q6NXN4 242 aa17.99■□□□□ 0.47
CLCNKA-203ENST00000439316 KCTD1Q719H9 257 aa17.99■□□□□ 0.47
CLCNKA-203ENST00000439316 MREGQ8N565 214 aa17.99■□□□□ 0.47
CLCNKA-203ENST00000439316 FAM133AQ8N9E0 248 aa17.99■□□□□ 0.47
CLCNKA-203ENST00000439316 ARL8AQ96BM9 186 aa17.99■□□□□ 0.47
CLCNKA-203ENST00000439316 ZIM3Q96PE6 472 aa17.99■□□□□ 0.47
CLCNKA-203ENST00000439316 KANSL2Q9H9L4 492 aa17.99■□□□□ 0.47
CLCNKA-203ENST00000439316 LTBP3Q9NS15 1303 aa17.98■□□□□ 0.47
CLCNKA-203ENST00000439316 SIPA1L1O43166 1804 aa17.98■□□□□ 0.47
CLCNKA-203ENST00000439316 CETN3O15182 167 aa17.98■□□□□ 0.47
CLCNKA-203ENST00000439316 MED24O75448 989 aa17.98■□□□□ 0.47
CLCNKA-203ENST00000439316 NPM3O75607 178 aaKnown RBP17.98■□□□□ 0.47
CLCNKA-203ENST00000439316 CARSP49589 748 aaKnown RBP17.98■□□□□ 0.47
CLCNKA-203ENST00000439316 USP11P51784 963 aa17.98■□□□□ 0.47
CLCNKA-203ENST00000439316 SLC12A3P55017 1021 aa17.98■□□□□ 0.47
CLCNKA-203ENST00000439316 KIAA0753Q2KHM9 967 aa17.98■□□□□ 0.47
CLCNKA-203ENST00000439316 ARSHQ5FYA8 562 aa17.98■□□□□ 0.47
CLCNKA-203ENST00000439316 SH3BP5LQ7L8J4 393 aa17.98■□□□□ 0.47
CLCNKA-203ENST00000439316 PACSIN1Q9BY11 444 aa17.98■□□□□ 0.47
CLCNKA-203ENST00000439316 ANO3Q9BYT9 981 aa17.98■□□□□ 0.47
CLCNKA-203ENST00000439316 DHX36Q9H2U1 1008 aaKnown RBP17.98■□□□□ 0.47
CLCNKA-203ENST00000439316 CES2O00748 559 aa17.97■□□□□ 0.47
CLCNKA-203ENST00000439316 KCNH2Q12809 1159 aa17.97■□□□□ 0.47
CLCNKA-203ENST00000439316 MOXD1Q6UVY6 613 aa17.97■□□□□ 0.47
CLCNKA-203ENST00000439316 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.97■□□□□ 0.47
CLCNKA-203ENST00000439316 PLCB1Q9NQ66 1216 aa17.97■□□□□ 0.47
CLCNKA-203ENST00000439316 ADAMTS1Q9UHI8 967 aa17.97■□□□□ 0.47
CLCNKA-203ENST00000439316 NFU1Q9UMS0 254 aa17.97■□□□□ 0.47
CLCNKA-203ENST00000439316 CLRN2A0PK11 232 aa17.97■□□□□ 0.47
CLCNKA-203ENST00000439316 USP17L15C9J2P7 530 aa17.97■□□□□ 0.47
CLCNKA-203ENST00000439316 USP17L13C9JLJ4 530 aa17.97■□□□□ 0.47
CLCNKA-203ENST00000439316 USP17L11C9JVI0 530 aa17.97■□□□□ 0.47
CLCNKA-203ENST00000439316 USP17L18D6R9N7 530 aa17.97■□□□□ 0.47
CLCNKA-203ENST00000439316 USP17L22D6RA61 530 aa17.97■□□□□ 0.47
CLCNKA-203ENST00000439316 USP17L17D6RBQ6 530 aa17.97■□□□□ 0.47
CLCNKA-203ENST00000439316 USP17L19D6RCP7 530 aa17.97■□□□□ 0.47
CLCNKA-203ENST00000439316 USP17L20D6RJB6 530 aa17.97■□□□□ 0.47
CLCNKA-203ENST00000439316 MYBP10242 640 aa17.97■□□□□ 0.47
CLCNKA-203ENST00000439316 EPS15P42566 896 aa17.97■□□□□ 0.47
CLCNKA-203ENST00000439316 GNGT1P63211 74 aa17.97■□□□□ 0.47
CLCNKA-203ENST00000439316 GUCY2DQ02846 1103 aa17.97■□□□□ 0.47
CLCNKA-203ENST00000439316 USP17L24Q0WX57 530 aa17.97■□□□□ 0.47
CLCNKA-203ENST00000439316 C10orf76Q5T2E6 689 aa17.97■□□□□ 0.47
CLCNKA-203ENST00000439316 USP17L6PQ6QN14 398 aa17.97■□□□□ 0.47
CLCNKA-203ENST00000439316 IQCKQ8N0W5 287 aa17.97■□□□□ 0.47
CLCNKA-203ENST00000439316 FHDC1Q9C0D6 1143 aaPredicted RBP17.97■□□□□ 0.47
CLCNKA-203ENST00000439316 EHD4Q9H223 541 aa17.97■□□□□ 0.47
CLCNKA-203ENST00000439316 EPB41L5Q9HCM4 733 aa17.97■□□□□ 0.47
CLCNKA-203ENST00000439316 TRAF3IP3Q9Y228 551 aa17.97■□□□□ 0.47
CLCNKA-203ENST00000439316 ZSCAN5CA6NGD5 496 aaPredicted RBP17.96■□□□□ 0.47
CLCNKA-203ENST00000439316 FAM153BP0C7A2 387 aa17.96■□□□□ 0.47
CLCNKA-203ENST00000439316 NR2F2P24468 414 aa17.96■□□□□ 0.47
CLCNKA-203ENST00000439316 STAT3P40763 770 aa17.96■□□□□ 0.47
CLCNKA-203ENST00000439316 ARID5AQ03989 594 aa17.96■□□□□ 0.47
CLCNKA-203ENST00000439316 TNIP1Q15025 636 aa17.96■□□□□ 0.47
CLCNKA-203ENST00000439316 QRICH1Q2TAL8 776 aa17.96■□□□□ 0.47
CLCNKA-203ENST00000439316 FAM153CQ494X1 144 aa17.96■□□□□ 0.47
CLCNKA-203ENST00000439316 FRMD5Q7Z6J6 570 aa17.96■□□□□ 0.47
CLCNKA-203ENST00000439316 SLFN12Q8IYM2 578 aa17.96■□□□□ 0.47
CLCNKA-203ENST00000439316 USP38Q8NB14 1042 aa17.96■□□□□ 0.47
CLCNKA-203ENST00000439316 BBXQ8WY36 941 aaPredicted RBP17.96■□□□□ 0.47
CLCNKA-203ENST00000439316 KRT12Q99456 494 aa17.96■□□□□ 0.47
CLCNKA-203ENST00000439316 PI4KBQ9UBF8 816 aa17.96■□□□□ 0.47
CLCNKA-203ENST00000439316 FAM153AQ9UHL3 310 aa17.96■□□□□ 0.47
CLCNKA-203ENST00000439316 TMEM59LQ9UK28 342 aa17.96■□□□□ 0.47
CLCNKA-203ENST00000439316 ESYT3A0FGR9 886 aa17.95■□□□□ 0.46
CLCNKA-203ENST00000439316 SHTN1A0MZ66 631 aa17.95■□□□□ 0.46
CLCNKA-203ENST00000439316 POTEFA5A3E0 1075 aa17.95■□□□□ 0.46
CLCNKA-203ENST00000439316 FAM196BA6NMK8 535 aa17.95■□□□□ 0.46
CLCNKA-203ENST00000439316 A6NNZ2 444 aa17.95■□□□□ 0.46
CLCNKA-203ENST00000439316 KRT18P05783 430 aaKnown RBP17.95■□□□□ 0.46
CLCNKA-203ENST00000439316 POTEIP0CG38 1075 aa17.95■□□□□ 0.46
CLCNKA-203ENST00000439316 DNA2P51530 1060 aa17.95■□□□□ 0.46
CLCNKA-203ENST00000439316 CASP5P51878 434 aa17.95■□□□□ 0.46
CLCNKA-203ENST00000439316 SPIRE1Q08AE8 756 aa17.95■□□□□ 0.46
CLCNKA-203ENST00000439316 CDC37Q16543 378 aaPredicted RBP17.95■□□□□ 0.46
CLCNKA-203ENST00000439316 TUBB8Q3ZCM7 444 aa17.95■□□□□ 0.46
CLCNKA-203ENST00000439316 POTEGQ6S5H5 508 aa17.95■□□□□ 0.46
CLCNKA-203ENST00000439316 POTEEQ6S8J3 1075 aa17.95■□□□□ 0.46
CLCNKA-203ENST00000439316 IRF2BP2Q7Z5L9 587 aa17.95■□□□□ 0.46
CLCNKA-203ENST00000439316 CD302Q8IX05 232 aa17.95■□□□□ 0.46
CLCNKA-203ENST00000439316 EFCAB13Q8IY85 973 aa17.95■□□□□ 0.46
CLCNKA-203ENST00000439316 CASKIN2Q8WXE0 1202 aa17.95■□□□□ 0.46
CLCNKA-203ENST00000439316 CRYGNQ8WXF5 182 aa17.95■□□□□ 0.46
CLCNKA-203ENST00000439316 CCDC43Q96MW1 224 aaKnown RBP17.95■□□□□ 0.46
CLCNKA-203ENST00000439316 FAM107BQ9H098 131 aa17.95■□□□□ 0.46
CLCNKA-203ENST00000439316 DNAJC18Q9H819 358 aa17.95■□□□□ 0.46
CLCNKA-203ENST00000439316 PACSIN2Q9UNF0 486 aaPredicted RBP17.95■□□□□ 0.46
CLCNKA-203ENST00000439316 ATP8B3O60423 1300 aa17.95■□□□□ 0.46
CLCNKA-203ENST00000439316 TCP10L2B9ZVM9 353 aa17.95■□□□□ 0.46
CLCNKA-203ENST00000439316 ENTPD3O75355 529 aa17.95■□□□□ 0.46
CLCNKA-203ENST00000439316 CCT5P48643 541 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms