RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 LRRC53A6NM62 1247 aa13.35□□□□□ -0.27
TCOF1-205ENST00000439160 STK4Q13043 487 aa13.35□□□□□ -0.27
TCOF1-205ENST00000439160 ACAD9Q9H845 621 aa13.35□□□□□ -0.27
TCOF1-205ENST00000439160 CTNNA1P35221 906 aaKnown RBP13.35□□□□□ -0.27
TCOF1-205ENST00000439160 GMPSP49915 693 aaPredicted RBP13.35□□□□□ -0.27
TCOF1-205ENST00000439160 SEC23AQ15436 765 aa13.35□□□□□ -0.27
TCOF1-205ENST00000439160 XXYLT1Q8NBI6 393 aa13.35□□□□□ -0.27
TCOF1-205ENST00000439160 MCPH1Q8NEM0 835 aa13.35□□□□□ -0.27
TCOF1-205ENST00000439160 ENGASEQ8NFI3 743 aa13.35□□□□□ -0.27
TCOF1-205ENST00000439160 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.35□□□□□ -0.27
TCOF1-205ENST00000439160 MAIP1Q8WWC4 291 aa13.35□□□□□ -0.27
TCOF1-205ENST00000439160 PNMA3Q9UL41 463 aa13.35□□□□□ -0.27
TCOF1-205ENST00000439160 GOLGA8SH3BPF8 625 aa13.35□□□□□ -0.27
TCOF1-205ENST00000439160 BSPRYQ5W0U4 402 aa13.35□□□□□ -0.27
TCOF1-205ENST00000439160 VGLL2Q8N8G2 317 aa13.35□□□□□ -0.27
TCOF1-205ENST00000439160 ANKRD36BP1Q96IX9 119 aa13.35□□□□□ -0.27
TCOF1-205ENST00000439160 MED10Q9BTT4 135 aa13.35□□□□□ -0.27
TCOF1-205ENST00000439160 SEC31AO94979 1220 aaKnown RBP13.34□□□□□ -0.27
TCOF1-205ENST00000439160 ADCY8P40145 1251 aa13.34□□□□□ -0.27
TCOF1-205ENST00000439160 ST3GAL1Q11201 340 aa13.34□□□□□ -0.27
TCOF1-205ENST00000439160 IFRD2Q12894 506 aaPredicted RBP13.34□□□□□ -0.27
TCOF1-205ENST00000439160 PPFIA1Q13136 1202 aa13.34□□□□□ -0.27
TCOF1-205ENST00000439160 ALCAMQ13740 583 aa13.34□□□□□ -0.27
TCOF1-205ENST00000439160 KIF22Q14807 665 aa13.34□□□□□ -0.27
TCOF1-205ENST00000439160 INTS8Q75QN2 995 aaKnown RBP13.34□□□□□ -0.27
TCOF1-205ENST00000439160 FBXO28Q9NVF7 368 aa13.34□□□□□ -0.27
TCOF1-205ENST00000439160 PARP2Q9UGN5 583 aa13.34□□□□□ -0.27
TCOF1-205ENST00000439160 TUBE1Q9UJT0 475 aa13.34□□□□□ -0.27
TCOF1-205ENST00000439160 DNAJC12Q9UKB3 198 aa13.34□□□□□ -0.27
TCOF1-205ENST00000439160 CAMTA1Q9Y6Y1 1673 aa13.34□□□□□ -0.27
TCOF1-205ENST00000439160 DENND3A2RUS2 1198 aa13.34□□□□□ -0.27
TCOF1-205ENST00000439160 RNF8O76064 485 aa13.34□□□□□ -0.27
TCOF1-205ENST00000439160 TBC1D8O95759 1140 aa13.34□□□□□ -0.27
TCOF1-205ENST00000439160 DPYDQ12882 1025 aa13.34□□□□□ -0.27
TCOF1-205ENST00000439160 BAATQ14032 418 aaPredicted RBP13.34□□□□□ -0.27
TCOF1-205ENST00000439160 HADHQ16836 314 aaKnown RBP13.34□□□□□ -0.27
TCOF1-205ENST00000439160 GPATCH11Q8N954 259 aa13.34□□□□□ -0.27
TCOF1-205ENST00000439160 CEP63Q96MT8 703 aa13.34□□□□□ -0.27
TCOF1-205ENST00000439160 DEFB129Q9H1M3 183 aa13.34□□□□□ -0.27
TCOF1-205ENST00000439160 SPON1Q9HCB6 807 aa13.34□□□□□ -0.27
TCOF1-205ENST00000439160 GGA3Q9NZ52 723 aa13.34□□□□□ -0.27
TCOF1-205ENST00000439160 JRKLQ9Y4A0 524 aa13.34□□□□□ -0.27
TCOF1-205ENST00000439160 HOXA7P31268 230 aaPredicted RBP13.34□□□□□ -0.27
TCOF1-205ENST00000439160 MNAT1P51948 309 aa13.34□□□□□ -0.27
TCOF1-205ENST00000439160 CEP85LQ5SZL2 805 aa13.34□□□□□ -0.27
TCOF1-205ENST00000439160 SCARA5Q6ZMJ2 495 aa13.34□□□□□ -0.27
TCOF1-205ENST00000439160 MAGOHBQ96A72 148 aaKnown RBP13.34□□□□□ -0.27
TCOF1-205ENST00000439160 NACA2Q9H009 215 aa13.34□□□□□ -0.27
TCOF1-205ENST00000439160 MYOZ2Q9NPC6 264 aa13.34□□□□□ -0.27
TCOF1-205ENST00000439160 SAMD15Q9P1V8 674 aa13.34□□□□□ -0.27
TCOF1-205ENST00000439160 NUB1Q9Y5A7 615 aa13.34□□□□□ -0.27
TCOF1-205ENST00000439160 CAPN9O14815 690 aa13.33□□□□□ -0.27
TCOF1-205ENST00000439160 MAPK4P31152 587 aa13.33□□□□□ -0.27
TCOF1-205ENST00000439160 KCNB1Q14721 858 aa13.33□□□□□ -0.27
TCOF1-205ENST00000439160 CASC4Q6P4E1 433 aa13.33□□□□□ -0.27
TCOF1-205ENST00000439160 CCDC121Q6ZUS5 278 aa13.33□□□□□ -0.27
TCOF1-205ENST00000439160 SREK1Q8WXA9 508 aaKnown RBP13.33□□□□□ -0.27
TCOF1-205ENST00000439160 MAP3K14Q99558 947 aa13.33□□□□□ -0.27
TCOF1-205ENST00000439160 ATP6V0A4Q9HBG4 840 aa13.33□□□□□ -0.27
TCOF1-205ENST00000439160 TYW1Q9NV66 732 aaKnown RBP13.33□□□□□ -0.27
TCOF1-205ENST00000439160 SYNJ2BP-COX16A0A087WUM0 186 aa13.33□□□□□ -0.28
TCOF1-205ENST00000439160 HGSO14964 777 aaPredicted RBP13.33□□□□□ -0.28
TCOF1-205ENST00000439160 NMT1P30419 496 aaKnown RBP13.33□□□□□ -0.28
TCOF1-205ENST00000439160 COG2Q14746 738 aa13.33□□□□□ -0.28
TCOF1-205ENST00000439160 PTPAQ15257 358 aa13.33□□□□□ -0.28
TCOF1-205ENST00000439160 NTRK3Q16288 839 aa13.33□□□□□ -0.28
TCOF1-205ENST00000439160 DENND2CQ68D51 928 aa13.33□□□□□ -0.28
TCOF1-205ENST00000439160 CAPN12Q6ZSI9 719 aa13.33□□□□□ -0.28
TCOF1-205ENST00000439160 ACER1Q8TDN7 264 aa13.33□□□□□ -0.28
TCOF1-205ENST00000439160 COX16Q9P0S2 106 aa13.33□□□□□ -0.28
TCOF1-205ENST00000439160 ZNF148Q9UQR1 794 aa13.33□□□□□ -0.28
TCOF1-205ENST00000439160 PTPN22Q9Y2R2 807 aa13.33□□□□□ -0.28
TCOF1-205ENST00000439160 PALM3A6NDB9 673 aaPredicted RBP13.33□□□□□ -0.28
TCOF1-205ENST00000439160 TLR3O15455 904 aaKnown RBP13.33□□□□□ -0.28
TCOF1-205ENST00000439160 NAALADL2Q58DX5 795 aa13.33□□□□□ -0.28
TCOF1-205ENST00000439160 RSAD2Q8WXG1 361 aa13.33□□□□□ -0.28
TCOF1-205ENST00000439160 AGXT2Q9BYV1 514 aa13.33□□□□□ -0.28
TCOF1-205ENST00000439160 MYMKA6NI61 221 aa13.33□□□□□ -0.28
TCOF1-205ENST00000439160 TRIM49P0CI25 452 aa13.33□□□□□ -0.28
TCOF1-205ENST00000439160 TRIM49CP0CI26 452 aa13.33□□□□□ -0.28
TCOF1-205ENST00000439160 KRT15P19012 456 aa13.33□□□□□ -0.28
TCOF1-205ENST00000439160 PSMC5P62195 406 aa13.33□□□□□ -0.28
TCOF1-205ENST00000439160 MRPS25P82663 173 aaKnown RBP13.33□□□□□ -0.28
TCOF1-205ENST00000439160 C2orf54Q08AI8 447 aa13.33□□□□□ -0.28
TCOF1-205ENST00000439160 KRT81Q14533 505 aa13.33□□□□□ -0.28
TCOF1-205ENST00000439160 MTF1Q14872 753 aa13.33□□□□□ -0.28
TCOF1-205ENST00000439160 ZNF394Q53GI3 561 aa13.33□□□□□ -0.28
TCOF1-205ENST00000439160 C7orf31Q8N865 590 aa13.33□□□□□ -0.28
TCOF1-205ENST00000439160 VPS37BQ9H9H4 285 aa13.33□□□□□ -0.28
TCOF1-205ENST00000439160 WDR46O15213 610 aaKnown RBP13.32□□□□□ -0.28
TCOF1-205ENST00000439160 ECE1P42892 770 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 EPHA7Q15375 998 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 PPP2R5EQ16537 467 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 CCDC14Q49A88 953 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 CYFIP1Q7L576 1253 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 ADSSL1Q8N142 457 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 NEK9Q8TD19 979 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 FBF1Q8TES7 1133 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 FAM213AQ9BRX8 229 aa13.32□□□□□ -0.28
TCOF1-205ENST00000439160 ELP3Q9H9T3 547 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms