RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 IL18BPO95998 194 aa8.05□□□□□ -1.12
CCDC88A-206ENST00000430086 COL6A1P12109 1028 aa8.05□□□□□ -1.12
CCDC88A-206ENST00000430086 SOX5P35711 763 aa8.05□□□□□ -1.12
CCDC88A-206ENST00000430086 MLLT6P55198 1093 aaPredicted RBP8.05□□□□□ -1.12
CCDC88A-206ENST00000430086 ADGRG2Q8IZP9 1017 aa8.05□□□□□ -1.12
CCDC88A-206ENST00000430086 EFHBQ8N7U6 833 aa8.05□□□□□ -1.12
CCDC88A-206ENST00000430086 CHAC2Q8WUX2 184 aa8.05□□□□□ -1.12
CCDC88A-206ENST00000430086 INCENPQ9NQS7 918 aa8.05□□□□□ -1.12
CCDC88A-206ENST00000430086 GALNT8Q9NY28 637 aa8.05□□□□□ -1.12
CCDC88A-206ENST00000430086 ZFP69BQ9UJL9 534 aa8.05□□□□□ -1.12
CCDC88A-206ENST00000430086 A0A1B0GTL3 188 aa8.04□□□□□ -1.12
CCDC88A-206ENST00000430086 BTBD11A6QL63 1104 aa8.04□□□□□ -1.12
CCDC88A-206ENST00000430086 FBXO21O94952 628 aa8.04□□□□□ -1.12
CCDC88A-206ENST00000430086 MC4RP32245 332 aa8.04□□□□□ -1.12
CCDC88A-206ENST00000430086 IL13P35225 146 aa8.04□□□□□ -1.12
CCDC88A-206ENST00000430086 GLRBP48167 497 aa8.04□□□□□ -1.12
CCDC88A-206ENST00000430086 SLURP1P55000 103 aa8.04□□□□□ -1.12
CCDC88A-206ENST00000430086 OCRLQ01968 901 aa8.04□□□□□ -1.12
CCDC88A-206ENST00000430086 SART3Q15020 963 aaKnown RBP8.04□□□□□ -1.12
CCDC88A-206ENST00000430086 SMAD2Q15796 467 aaKnown RBP8.04□□□□□ -1.12
CCDC88A-206ENST00000430086 DDX46Q7L014 1031 aaKnown RBP8.04□□□□□ -1.12
CCDC88A-206ENST00000430086 CHTF18Q8WVB6 975 aa8.04□□□□□ -1.12
CCDC88A-206ENST00000430086 FOXRED1Q96CU9 486 aaPredicted RBP8.04□□□□□ -1.12
CCDC88A-206ENST00000430086 ELF4Q99607 663 aaPredicted RBP8.04□□□□□ -1.12
CCDC88A-206ENST00000430086 LUC7LQ9NQ29 371 aaKnown RBP8.04□□□□□ -1.12
CCDC88A-206ENST00000430086 THG1LQ9NWX6 298 aaKnown RBP8.04□□□□□ -1.12
CCDC88A-206ENST00000430086 DDX3XO00571 662 aaKnown RBP eCLIP8.03□□□□□ -1.12
CCDC88A-206ENST00000430086 LSSP48449 732 aa8.03□□□□□ -1.12
CCDC88A-206ENST00000430086 FAM26FQ5R3K3 315 aa8.03□□□□□ -1.12
CCDC88A-206ENST00000430086 PHF19Q5T6S3 580 aa8.03□□□□□ -1.12
CCDC88A-206ENST00000430086 PRAMEF18Q5VWM3 479 aa8.03□□□□□ -1.12
CCDC88A-206ENST00000430086 DPP8Q6V1X1 898 aaPredicted RBP8.03□□□□□ -1.12
CCDC88A-206ENST00000430086 RTN4RL1Q86UN2 441 aaPredicted RBP8.03□□□□□ -1.12
CCDC88A-206ENST00000430086 STPG3Q8N7X2 389 aa8.03□□□□□ -1.12
CCDC88A-206ENST00000430086 HIPK4Q8NE63 616 aa8.03□□□□□ -1.12
CCDC88A-206ENST00000430086 ZCCHC14Q8WYQ9 949 aaKnown RBP8.03□□□□□ -1.12
CCDC88A-206ENST00000430086 SCYL1Q96KG9 808 aa8.03□□□□□ -1.12
CCDC88A-206ENST00000430086 C16orf92Q96LL3 132 aa8.03□□□□□ -1.12
CCDC88A-206ENST00000430086 AMNQ9BXJ7 453 aa8.03□□□□□ -1.12
CCDC88A-206ENST00000430086 UCKL1Q9NWZ5 548 aa8.03□□□□□ -1.12
CCDC88A-206ENST00000430086 H2AFY2Q9P0M6 372 aaPredicted RBP8.03□□□□□ -1.12
CCDC88A-206ENST00000430086 PRAMEF22A3QJZ6 481 aa8.02□□□□□ -1.13
CCDC88A-206ENST00000430086 TRIM13O60858 407 aa8.02□□□□□ -1.13
CCDC88A-206ENST00000430086 KNG1P01042 644 aa8.02□□□□□ -1.13
CCDC88A-206ENST00000430086 BPIP17213 487 aa8.02□□□□□ -1.13
CCDC88A-206ENST00000430086 SLC9A1P19634 815 aa8.02□□□□□ -1.13
CCDC88A-206ENST00000430086 KPNA1P52294 538 aaPredicted RBP8.02□□□□□ -1.13
CCDC88A-206ENST00000430086 EPHA7Q15375 998 aa8.02□□□□□ -1.13
CCDC88A-206ENST00000430086 STILQ15468 1287 aa8.02□□□□□ -1.13
CCDC88A-206ENST00000430086 CXXC5Q7LFL8 322 aaKnown RBP8.02□□□□□ -1.13
CCDC88A-206ENST00000430086 NME9Q86XW9 330 aa8.02□□□□□ -1.13
CCDC88A-206ENST00000430086 SP8Q8IXZ3 490 aa8.02□□□□□ -1.13
CCDC88A-206ENST00000430086 MARCH10Q8NA82 808 aaPredicted RBP8.02□□□□□ -1.13
CCDC88A-206ENST00000430086 ADAMTS17Q8TE56 1095 aa8.02□□□□□ -1.13
CCDC88A-206ENST00000430086 E2F7Q96AV8 911 aa8.02□□□□□ -1.13
CCDC88A-206ENST00000430086 YTHDC1Q96MU7 727 aaKnown RBP8.02□□□□□ -1.13
CCDC88A-206ENST00000430086 TACO1Q9BSH4 297 aaKnown RBP8.02□□□□□ -1.13
CCDC88A-206ENST00000430086 BTBD2Q9BX70 525 aa8.02□□□□□ -1.13
CCDC88A-206ENST00000430086 SPC25Q9HBM1 224 aa8.02□□□□□ -1.13
CCDC88A-206ENST00000430086 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.02□□□□□ -1.13
CCDC88A-206ENST00000430086 FKBP9O95302 570 aa8.01□□□□□ -1.13
CCDC88A-206ENST00000430086 PTX3P26022 381 aaPredicted RBP8.01□□□□□ -1.13
CCDC88A-206ENST00000430086 CANXP27824 592 aaKnown RBP8.01□□□□□ -1.13
CCDC88A-206ENST00000430086 ADCYAP1R1P41586 468 aa8.01□□□□□ -1.13
CCDC88A-206ENST00000430086 ECE1P42892 770 aa8.01□□□□□ -1.13
CCDC88A-206ENST00000430086 KCNC1P48547 511 aa8.01□□□□□ -1.13
CCDC88A-206ENST00000430086 RNF187Q5TA31 235 aaPredicted RBP8.01□□□□□ -1.13
CCDC88A-206ENST00000430086 TRMT10BQ6PF06 316 aaKnown RBP8.01□□□□□ -1.13
CCDC88A-206ENST00000430086 FKBP9P1Q75LS8 142 aa8.01□□□□□ -1.13
CCDC88A-206ENST00000430086 ZNF761Q86XN6 746 aaPredicted RBP8.01□□□□□ -1.13
CCDC88A-206ENST00000430086 PASD1Q8IV76 773 aa8.01□□□□□ -1.13
CCDC88A-206ENST00000430086 ZZZ3Q8IYH5 903 aa8.01□□□□□ -1.13
CCDC88A-206ENST00000430086 AFAP1L2Q8N4X5 818 aa8.01□□□□□ -1.13
CCDC88A-206ENST00000430086 UBR7Q8N806 425 aa8.01□□□□□ -1.13
CCDC88A-206ENST00000430086 GPR101Q96P66 508 aaPredicted RBP8.01□□□□□ -1.13
CCDC88A-206ENST00000430086 FOXB1Q99853 325 aa8.01□□□□□ -1.13
CCDC88A-206ENST00000430086 SPATA25Q9BR10 227 aa8.01□□□□□ -1.13
CCDC88A-206ENST00000430086 L2HGDHQ9H9P8 463 aa8.01□□□□□ -1.13
CCDC88A-206ENST00000430086 C9orf118A6NHY6 69 aa8□□□□□ -1.13
CCDC88A-206ENST00000430086 TGM5O43548 720 aa8□□□□□ -1.13
CCDC88A-206ENST00000430086 ZEB2O60315 1214 aa8□□□□□ -1.13
CCDC88A-206ENST00000430086 DNAJC6O75061 913 aa8□□□□□ -1.13
CCDC88A-206ENST00000430086 IL2P60568 153 aa8□□□□□ -1.13
CCDC88A-206ENST00000430086 ALDH6A1Q02252 535 aaKnown RBP8□□□□□ -1.13
CCDC88A-206ENST00000430086 ADCY1Q08828 1119 aa8□□□□□ -1.13
CCDC88A-206ENST00000430086 GPR158Q5T848 1215 aa8□□□□□ -1.13
CCDC88A-206ENST00000430086 ESRP1Q6NXG1 681 aaKnown RBP8□□□□□ -1.13
CCDC88A-206ENST00000430086 ZNF662Q6ZS27 426 aa8□□□□□ -1.13
CCDC88A-206ENST00000430086 STRA8Q7Z7C7 330 aa8□□□□□ -1.13
CCDC88A-206ENST00000430086 TXNDC5Q8NBS9 432 aaKnown RBP8□□□□□ -1.13
CCDC88A-206ENST00000430086 CALML6Q8TD86 181 aa8□□□□□ -1.13
CCDC88A-206ENST00000430086 USP7Q93009 1102 aa8□□□□□ -1.13
CCDC88A-206ENST00000430086 KCNC2Q96PR1 638 aa8□□□□□ -1.13
CCDC88A-206ENST00000430086 TOMM22Q9NS69 142 aa8□□□□□ -1.13
CCDC88A-206ENST00000430086 SPTLC3Q9NUV7 552 aa8□□□□□ -1.13
CCDC88A-206ENST00000430086 FTSJ1Q9UET6 329 aa8□□□□□ -1.13
CCDC88A-206ENST00000430086 H0Y858 1186 aa7.99□□□□□ -1.13
CCDC88A-206ENST00000430086 MAFO75444 373 aaPredicted RBP7.99□□□□□ -1.13
CCDC88A-206ENST00000430086 KLHL18O94889 574 aa7.99□□□□□ -1.13
CCDC88A-206ENST00000430086 IL13RA1P78552 427 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms