RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 TIGD1Q96MW7 591 aa11.27□□□□□ -0.61
CD44-207ENST00000425428 PLIN2Q99541 437 aa11.27□□□□□ -0.61
CD44-207ENST00000425428 HSD17B14Q9BPX1 270 aa11.27□□□□□ -0.61
CD44-207ENST00000425428 MTG1Q9BT17 334 aaPredicted RBP11.27□□□□□ -0.61
CD44-207ENST00000425428 ANKEF1Q9NU02 776 aa11.27□□□□□ -0.61
CD44-207ENST00000425428 RGL1Q9NZL6 768 aa11.27□□□□□ -0.61
CD44-207ENST00000425428 CEP350Q5VT06 3117 aa11.27□□□□□ -0.61
CD44-207ENST00000425428 SYNRGQ9UMZ2 1314 aa11.27□□□□□ -0.61
CD44-207ENST00000425428 GSTTP1A0A1W2PQM5 241 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 MOXD2PA6NHM9 499 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 H3BRB1 525 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 HBP1O60381 514 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 MED24O75448 989 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 LGR5O75473 907 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 SMC2O95347 1197 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 MYCP01106 439 aaPredicted RBP11.26□□□□□ -0.61
CD44-207ENST00000425428 TFRCP02786 760 aaKnown RBP11.26□□□□□ -0.61
CD44-207ENST00000425428 MYL1P05976 194 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 SLFN14P0C7P3 912 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 PRKCEQ02156 737 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 XKR9Q5GH70 373 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 HYIQ5T013 277 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 B3GNT9Q6UX72 402 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 TSEN34Q9BSV6 310 aaKnown RBP11.26□□□□□ -0.61
CD44-207ENST00000425428 UPF3AQ9H1J1 476 aaKnown RBP11.26□□□□□ -0.61
CD44-207ENST00000425428 TUT1Q9H6E5 874 aaKnown RBP11.26□□□□□ -0.61
CD44-207ENST00000425428 KCND2Q9NZV8 630 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 MAFBQ9Y5Q3 323 aaPredicted RBP11.26□□□□□ -0.61
CD44-207ENST00000425428 POTEFA5A3E0 1075 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 LETM1O95202 739 aaPredicted RBP11.26□□□□□ -0.61
CD44-207ENST00000425428 LYPLA2O95372 231 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 EYA4O95677 639 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 PGK1P00558 417 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 OATP04181 439 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 DHX8Q14562 1220 aaKnown RBP11.26□□□□□ -0.61
CD44-207ENST00000425428 POTEGQ6S5H5 508 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 CCDC60Q8IWA6 550 aaPredicted RBP11.26□□□□□ -0.61
CD44-207ENST00000425428 RETREG2Q8NC44 543 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 SLC7A3Q8WY07 619 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 RAD54LQ92698 747 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 CEP170P1Q96L14 293 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 GLT1D1Q96MS3 346 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 DEFB118Q96PH6 123 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 SEZ6LQ9BYH1 1024 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 UNC93B1Q9H1C4 597 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 TNMDQ9H2S6 317 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 DACT1Q9NYF0 836 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 KCNG1Q9UIX4 513 aa11.26□□□□□ -0.61
CD44-207ENST00000425428 DBR1Q9UK59 544 aaKnown RBP11.26□□□□□ -0.61
CD44-207ENST00000425428 IGKV6D-21A0A0A0MT36 114 aa11.25□□□□□ -0.61
CD44-207ENST00000425428 FAM237AA0A1B0GTK4 181 aa11.25□□□□□ -0.61
CD44-207ENST00000425428 RRN3P2A6NIE6 340 aa11.25□□□□□ -0.61
CD44-207ENST00000425428 SPATA31C1P0DKV0 1188 aa11.25□□□□□ -0.61
CD44-207ENST00000425428 MARK3P27448 753 aa11.25□□□□□ -0.61
CD44-207ENST00000425428 TMOD1P28289 359 aa11.25□□□□□ -0.61
CD44-207ENST00000425428 CST5P28325 142 aaPredicted RBP11.25□□□□□ -0.61
CD44-207ENST00000425428 DNM2P50570 870 aa11.25□□□□□ -0.61
CD44-207ENST00000425428 BEX3Q00994 111 aa11.25□□□□□ -0.61
CD44-207ENST00000425428 GRB10Q13322 594 aa11.25□□□□□ -0.61
CD44-207ENST00000425428 TMEM119Q4V9L6 283 aa11.25□□□□□ -0.61
CD44-207ENST00000425428 ZNF484Q5JVG2 852 aa11.25□□□□□ -0.61
CD44-207ENST00000425428 KRBA2Q6ZNG9 492 aa11.25□□□□□ -0.61
CD44-207ENST00000425428 USP49Q70CQ1 688 aa11.25□□□□□ -0.61
CD44-207ENST00000425428 C7orf31Q8N865 590 aa11.25□□□□□ -0.61
CD44-207ENST00000425428 ATP8B4Q8TF62 1192 aa11.25□□□□□ -0.61
CD44-207ENST00000425428 ARMC5Q96C12 935 aa11.25□□□□□ -0.61
CD44-207ENST00000425428 TIPINQ9BVW5 301 aa11.25□□□□□ -0.61
CD44-207ENST00000425428 NUP62CLQ9H1M0 184 aa11.25□□□□□ -0.61
CD44-207ENST00000425428 BHMT2Q9H2M3 363 aa11.25□□□□□ -0.61
CD44-207ENST00000425428 HPSEQ9Y251 543 aa11.25□□□□□ -0.61
CD44-207ENST00000425428 IGSF9BQ9UPX0 1349 aa11.25□□□□□ -0.61
CD44-207ENST00000425428 MYH11P35749 1972 aa11.25□□□□□ -0.61
CD44-207ENST00000425428 GAS2O43903 313 aaKnown RBP11.24□□□□□ -0.61
CD44-207ENST00000425428 TRAK2O60296 914 aa11.24□□□□□ -0.61
CD44-207ENST00000425428 NR1I2O75469 434 aa11.24□□□□□ -0.61
CD44-207ENST00000425428 PLA2G4BP0C869 781 aa11.24□□□□□ -0.61
CD44-207ENST00000425428 ZNF286BP0CG31 522 aa11.24□□□□□ -0.61
CD44-207ENST00000425428 RFC5P40937 340 aa11.24□□□□□ -0.61
CD44-207ENST00000425428 POLGP54098 1239 aaPredicted RBP11.24□□□□□ -0.61
CD44-207ENST00000425428 TBC1D8BQ0IIM8 1120 aa11.24□□□□□ -0.61
CD44-207ENST00000425428 MFSD10Q14728 455 aa11.24□□□□□ -0.61
CD44-207ENST00000425428 KCNA10Q16322 511 aa11.24□□□□□ -0.61
CD44-207ENST00000425428 KIAA0753Q2KHM9 967 aa11.24□□□□□ -0.61
CD44-207ENST00000425428 KLHL40Q2TBA0 621 aa11.24□□□□□ -0.61
CD44-207ENST00000425428 CCDC183Q5T5S1 534 aa11.24□□□□□ -0.61
CD44-207ENST00000425428 FMR1NBQ8N0W7 255 aaPredicted RBP11.24□□□□□ -0.61
CD44-207ENST00000425428 PIGOQ8TEQ8 1089 aa11.24□□□□□ -0.61
CD44-207ENST00000425428 LENG1Q96BZ8 264 aaPredicted RBP11.24□□□□□ -0.61
CD44-207ENST00000425428 ZNF333Q96JL9 665 aa11.24□□□□□ -0.61
CD44-207ENST00000425428 MMTAG2Q9BU76 263 aaKnown RBP11.24□□□□□ -0.61
CD44-207ENST00000425428 GTPBP4Q9BZE4 634 aaKnown RBP11.24□□□□□ -0.61
CD44-207ENST00000425428 BCAS3Q9H6U6 928 aa11.24□□□□□ -0.61
CD44-207ENST00000425428 PAK6Q9NQU5 681 aaPredicted RBP11.24□□□□□ -0.61
CD44-207ENST00000425428 SERTAD1Q9UHV2 236 aa11.24□□□□□ -0.61
CD44-207ENST00000425428 COL1A2P08123 1366 aa11.24□□□□□ -0.61
CD44-207ENST00000425428 FRMPD3Q5JV73 1810 aa11.24□□□□□ -0.61
CD44-207ENST00000425428 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.23□□□□□ -0.61
CD44-207ENST00000425428 E9PMD0 336 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 DNM1LO00429 736 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 MAGEB2O15479 319 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms