RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 PHKBQ93100 1093 aa13.18□□□□□ -0.3
USP4-204ENST00000416417 RC3H2Q9HBD1 1191 aaKnown RBP13.18□□□□□ -0.3
USP4-204ENST00000416417 PADI3Q9ULW8 664 aa13.18□□□□□ -0.3
USP4-204ENST00000416417 SNX14Q9Y5W7 946 aa13.18□□□□□ -0.3
USP4-204ENST00000416417 COL4A6Q14031 1691 aa13.18□□□□□ -0.3
USP4-204ENST00000416417 ATG7O95352 703 aa13.18□□□□□ -0.3
USP4-204ENST00000416417 SCG2P13521 617 aa13.18□□□□□ -0.3
USP4-204ENST00000416417 KLRC1P26715 233 aa13.18□□□□□ -0.3
USP4-204ENST00000416417 GTF2F1P35269 517 aaKnown RBP eCLIP13.18□□□□□ -0.3
USP4-204ENST00000416417 BMPR1AP36894 532 aa13.18□□□□□ -0.3
USP4-204ENST00000416417 KRT32Q14532 448 aa13.18□□□□□ -0.3
USP4-204ENST00000416417 CLUL1Q15846 466 aa13.18□□□□□ -0.3
USP4-204ENST00000416417 PKN1Q16512 942 aa13.18□□□□□ -0.3
USP4-204ENST00000416417 PFKFB3Q16875 520 aaPredicted RBP13.18□□□□□ -0.3
USP4-204ENST00000416417 SWSAP1Q6NVH7 229 aa13.18□□□□□ -0.3
USP4-204ENST00000416417 ABHD15Q6UXT9 468 aa13.18□□□□□ -0.3
USP4-204ENST00000416417 PLPPR4Q7Z2D5 763 aa13.18□□□□□ -0.3
USP4-204ENST00000416417 ZNF689Q96CS4 500 aaPredicted RBP13.18□□□□□ -0.3
USP4-204ENST00000416417 CELF4Q9BZC1 486 aaKnown RBP13.18□□□□□ -0.3
USP4-204ENST00000416417 TMX1Q9H3N1 280 aa13.18□□□□□ -0.3
USP4-204ENST00000416417 NSUN3Q9H649 340 aaKnown RBP13.18□□□□□ -0.3
USP4-204ENST00000416417 ALG13Q9NP73 1137 aaKnown RBP13.18□□□□□ -0.3
USP4-204ENST00000416417 CLDND1Q9NY35 253 aa13.18□□□□□ -0.3
USP4-204ENST00000416417 PCDHA2Q9Y5H9 948 aa13.18□□□□□ -0.3
USP4-204ENST00000416417 MRPL42Q9Y6G3 142 aaKnown RBP13.18□□□□□ -0.3
USP4-204ENST00000416417 KAT6AQ92794 2004 aa13.17□□□□□ -0.3
USP4-204ENST00000416417 IGLV3-22A0A075B6J6 115 aa13.17□□□□□ -0.3
USP4-204ENST00000416417 M0QZ92 97 aa13.17□□□□□ -0.3
USP4-204ENST00000416417 DHX15O43143 795 aaKnown RBP13.17□□□□□ -0.3
USP4-204ENST00000416417 MGEA5O60502 916 aa13.17□□□□□ -0.3
USP4-204ENST00000416417 DGKIO75912 1065 aa13.17□□□□□ -0.3
USP4-204ENST00000416417 ATP4AP20648 1035 aa13.17□□□□□ -0.3
USP4-204ENST00000416417 NFX1Q12986 1120 aaKnown RBP13.17□□□□□ -0.3
USP4-204ENST00000416417 AP3B2Q13367 1082 aa13.17□□□□□ -0.3
USP4-204ENST00000416417 TIGD5Q53EQ6 642 aa13.17□□□□□ -0.3
USP4-204ENST00000416417 IER5Q5VY09 327 aa13.17□□□□□ -0.3
USP4-204ENST00000416417 LRFN3Q9BTN0 628 aa13.17□□□□□ -0.3
USP4-204ENST00000416417 IGFLR1Q9H665 355 aa13.17□□□□□ -0.3
USP4-204ENST00000416417 NCOA5Q9HCD5 579 aaKnown RBP13.17□□□□□ -0.3
USP4-204ENST00000416417 NLRC5Q86WI3 1866 aa13.17□□□□□ -0.3
USP4-204ENST00000416417 IGKV6D-21A0A0A0MT36 114 aa13.16□□□□□ -0.3
USP4-204ENST00000416417 GRXCR2A6NFK2 248 aa13.16□□□□□ -0.3
USP4-204ENST00000416417 SSTR3P32745 418 aaPredicted RBP13.16□□□□□ -0.3
USP4-204ENST00000416417 CCT2P78371 535 aaKnown RBP13.16□□□□□ -0.3
USP4-204ENST00000416417 KRT76Q01546 638 aa13.16□□□□□ -0.3
USP4-204ENST00000416417 DLX2Q07687 328 aaPredicted RBP13.16□□□□□ -0.3
USP4-204ENST00000416417 PAK2Q13177 524 aa13.16□□□□□ -0.3
USP4-204ENST00000416417 PDXDC2PQ6P474 469 aa13.16□□□□□ -0.3
USP4-204ENST00000416417 FAM178BQ8IXR5 827 aa13.16□□□□□ -0.3
USP4-204ENST00000416417 NEK9Q8TD19 979 aa13.16□□□□□ -0.3
USP4-204ENST00000416417 TMEM40Q8WWA1 233 aa13.16□□□□□ -0.3
USP4-204ENST00000416417 LARP6Q9BRS8 491 aaKnown RBP13.16□□□□□ -0.3
USP4-204ENST00000416417 ZNF577Q9BSK1 485 aa13.16□□□□□ -0.3
USP4-204ENST00000416417 C1QTNF1Q9BXJ1 281 aa13.16□□□□□ -0.3
USP4-204ENST00000416417 C11orf16Q9NQ32 467 aa13.16□□□□□ -0.3
USP4-204ENST00000416417 ZNF302Q9NR11 478 aa13.16□□□□□ -0.3
USP4-204ENST00000416417 NOC2LQ9Y3T9 749 aaKnown RBP13.16□□□□□ -0.3
USP4-204ENST00000416417 IGSF9BQ9UPX0 1349 aa13.15□□□□□ -0.3
USP4-204ENST00000416417 SMIM35A0A1B0GVV1 85 aa13.15□□□□□ -0.3
USP4-204ENST00000416417 ZBTB42B2RXF5 422 aa13.15□□□□□ -0.3
USP4-204ENST00000416417 C5orf67F2Z3F1 127 aa13.15□□□□□ -0.3
USP4-204ENST00000416417 hCG_1984214I3L0E3 225 aa13.15□□□□□ -0.3
USP4-204ENST00000416417 IPO5O00410 1097 aaKnown RBP13.15□□□□□ -0.3
USP4-204ENST00000416417 LINC01565O15544 149 aa13.15□□□□□ -0.3
USP4-204ENST00000416417 HMGB1P09429 215 aaKnown RBP13.15□□□□□ -0.3
USP4-204ENST00000416417 DNAJB1P25685 340 aa13.15□□□□□ -0.3
USP4-204ENST00000416417 HSPA4P34932 840 aa13.15□□□□□ -0.3
USP4-204ENST00000416417 HYAL1Q12794 435 aa13.15□□□□□ -0.3
USP4-204ENST00000416417 FAM160B1Q5W0V3 765 aa13.15□□□□□ -0.3
USP4-204ENST00000416417 BLOC1S2Q6QNY1 142 aa13.15□□□□□ -0.3
USP4-204ENST00000416417 NIPA1Q7RTP0 329 aa13.15□□□□□ -0.3
USP4-204ENST00000416417 CKAP2LQ8IYA6 745 aa13.15□□□□□ -0.3
USP4-204ENST00000416417 KIAA0319LQ8IZA0 1049 aa13.15□□□□□ -0.3
USP4-204ENST00000416417 CRIPAKQ8N1N5 446 aa13.15□□□□□ -0.3
USP4-204ENST00000416417 ZNF713Q8N859 430 aaPredicted RBP13.15□□□□□ -0.3
USP4-204ENST00000416417 ATP8B4Q8TF62 1192 aa13.15□□□□□ -0.3
USP4-204ENST00000416417 CRYGNQ8WXF5 182 aa13.15□□□□□ -0.3
USP4-204ENST00000416417 KCNB2Q92953 911 aa13.15□□□□□ -0.3
USP4-204ENST00000416417 CLP1Q92989 425 aaKnown RBP13.15□□□□□ -0.3
USP4-204ENST00000416417 GJA10Q969M2 543 aa13.15□□□□□ -0.3
USP4-204ENST00000416417 PABPC5Q96DU9 382 aaKnown RBP13.15□□□□□ -0.3
USP4-204ENST00000416417 ZNF668Q96K58 619 aaPredicted RBP13.15□□□□□ -0.3
USP4-204ENST00000416417 C11orf84Q9BUA3 381 aaPredicted RBP13.15□□□□□ -0.3
USP4-204ENST00000416417 SLC26A6Q9BXS9 759 aa13.15□□□□□ -0.3
USP4-204ENST00000416417 VPS54Q9P1Q0 977 aa13.15□□□□□ -0.3
USP4-204ENST00000416417 HCSTQ9UBK5 93 aa13.15□□□□□ -0.3
USP4-204ENST00000416417 PCDHGC5Q9Y5F6 944 aa13.15□□□□□ -0.3
USP4-204ENST00000416417 ATG2AQ2TAZ0 1938 aa13.15□□□□□ -0.3
USP4-204ENST00000416417 HBP1O60381 514 aa13.14□□□□□ -0.31
USP4-204ENST00000416417 VTNP04004 478 aa13.14□□□□□ -0.31
USP4-204ENST00000416417 RPS6KB1P23443 525 aa13.14□□□□□ -0.31
USP4-204ENST00000416417 LTBRP36941 435 aa13.14□□□□□ -0.31
USP4-204ENST00000416417 CAMK1Q14012 370 aa13.14□□□□□ -0.31
USP4-204ENST00000416417 KIZQ2M2Z5 673 aa13.14□□□□□ -0.31
USP4-204ENST00000416417 PRR16Q569H4 304 aa13.14□□□□□ -0.31
USP4-204ENST00000416417 MIS18BP1Q6P0N0 1132 aa13.14□□□□□ -0.31
USP4-204ENST00000416417 NPAS4Q8IUM7 802 aa13.14□□□□□ -0.31
USP4-204ENST00000416417 GJD3Q8N144 294 aa13.14□□□□□ -0.31
USP4-204ENST00000416417 ZMYND12Q9H0C1 365 aa13.14□□□□□ -0.31
USP4-204ENST00000416417 C6orf50Q9HD87 102 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms