RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 HDAC9Q9UKV0 1011 aa10.83□□□□□ -0.68
SS18-203ENST00000415083 BTNL10A8MVZ5 291 aa10.83□□□□□ -0.68
SS18-203ENST00000415083 DDX3XO00571 662 aaKnown RBP eCLIP10.83□□□□□ -0.681e-15■■■□□ 17.7
SS18-203ENST00000415083 PLCG2P16885 1265 aa10.83□□□□□ -0.68
SS18-203ENST00000415083 PDE4CQ08493 712 aa10.83□□□□□ -0.68
SS18-203ENST00000415083 GLE1Q53GS7 698 aaKnown RBP10.83□□□□□ -0.68
SS18-203ENST00000415083 KSR1Q8IVT5 923 aa10.83□□□□□ -0.68
SS18-203ENST00000415083 CD302Q8IX05 232 aa10.83□□□□□ -0.68
SS18-203ENST00000415083 RPGRQ92834 1020 aaKnown RBP10.83□□□□□ -0.68
SS18-203ENST00000415083 TSPYL1Q9H0U9 437 aa10.83□□□□□ -0.68
SS18-203ENST00000415083 MYO3BQ8WXR4 1341 aa10.83□□□□□ -0.68
SS18-203ENST00000415083 DCDC2CA8MYV0 355 aa10.83□□□□□ -0.68
SS18-203ENST00000415083 POLRMTO00411 1230 aaKnown RBP10.83□□□□□ -0.68
SS18-203ENST00000415083 LRRN2O75325 713 aa10.83□□□□□ -0.68
SS18-203ENST00000415083 NR2F2P24468 414 aa10.83□□□□□ -0.68
SS18-203ENST00000415083 POU5F1Q01860 360 aaKnown RBP10.83□□□□□ -0.68
SS18-203ENST00000415083 KLHL30Q0D2K2 578 aa10.83□□□□□ -0.68
SS18-203ENST00000415083 PABPC4Q13310 644 aaKnown RBP eCLIP10.83□□□□□ -0.687e-6■■□□□ 12
SS18-203ENST00000415083 ITGB3BPQ13352 177 aaPredicted RBP10.83□□□□□ -0.68
SS18-203ENST00000415083 COG2Q14746 738 aa10.83□□□□□ -0.68
SS18-203ENST00000415083 SEPT2Q15019 361 aa10.83□□□□□ -0.68
SS18-203ENST00000415083 SPRED3Q2MJR0 410 aa10.83□□□□□ -0.68
SS18-203ENST00000415083 IQCEQ6IPM2 695 aa10.83□□□□□ -0.68
SS18-203ENST00000415083 SLFN11Q7Z7L1 901 aa10.83□□□□□ -0.68
SS18-203ENST00000415083 METTL13Q8N6R0 699 aa10.83□□□□□ -0.68
SS18-203ENST00000415083 BCAS4Q8TDM0 211 aa10.83□□□□□ -0.68
SS18-203ENST00000415083 SLC35C1Q96A29 364 aa10.83□□□□□ -0.68
SS18-203ENST00000415083 TSG101Q99816 390 aa10.83□□□□□ -0.68
SS18-203ENST00000415083 FAM169AQ9Y6X4 670 aa10.83□□□□□ -0.68
SS18-203ENST00000415083 KIF4AO95239 1232 aa10.82□□□□□ -0.68
SS18-203ENST00000415083 EDRF1Q3B7T1 1238 aa10.82□□□□□ -0.68
SS18-203ENST00000415083 CCDC181Q5TID7 509 aa10.82□□□□□ -0.68
SS18-203ENST00000415083 KLHL7Q8IXQ5 586 aa10.82□□□□□ -0.68
SS18-203ENST00000415083 SLC30A5Q8TAD4 765 aa10.82□□□□□ -0.68
SS18-203ENST00000415083 AP1M1Q9BXS5 423 aa10.82□□□□□ -0.68
SS18-203ENST00000415083 USP40Q9NVE5 1235 aa10.82□□□□□ -0.68
SS18-203ENST00000415083 WRAP73Q9P2S5 460 aaPredicted RBP10.82□□□□□ -0.68
SS18-203ENST00000415083 FGFR1OPO95684 399 aaKnown RBP10.82□□□□□ -0.68
SS18-203ENST00000415083 EEF2P13639 858 aaKnown RBP10.82□□□□□ -0.68
SS18-203ENST00000415083 HSPA9P38646 679 aaKnown RBP10.82□□□□□ -0.68
SS18-203ENST00000415083 FNTAP49354 379 aa10.82□□□□□ -0.68
SS18-203ENST00000415083 USP11P51784 963 aa10.82□□□□□ -0.68
SS18-203ENST00000415083 SEC24CP53992 1094 aa10.82□□□□□ -0.68
SS18-203ENST00000415083 DOK7Q18PE1 504 aa10.82□□□□□ -0.68
SS18-203ENST00000415083 KIAA1755Q5JYT7 1200 aa10.82□□□□□ -0.68
SS18-203ENST00000415083 KDM7AQ6ZMT4 941 aa10.82□□□□□ -0.68
SS18-203ENST00000415083 PALB2Q86YC2 1186 aa10.82□□□□□ -0.68
SS18-203ENST00000415083 SYT2Q8N9I0 419 aaPredicted RBP10.82□□□□□ -0.68
SS18-203ENST00000415083 TPCN2Q8NHX9 752 aa10.82□□□□□ -0.68
SS18-203ENST00000415083 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.82□□□□□ -0.68
SS18-203ENST00000415083 PLCB1Q9NQ66 1216 aa10.82□□□□□ -0.68
SS18-203ENST00000415083 SFI1A8K8P3 1242 aa10.81□□□□□ -0.68
SS18-203ENST00000415083 IPO4Q8TEX9 1081 aaKnown RBP10.81□□□□□ -0.68
SS18-203ENST00000415083 CNOT8Q9UFF9 292 aaKnown RBP10.81□□□□□ -0.68
SS18-203ENST00000415083 FAM198AQ9UFP1 575 aa10.81□□□□□ -0.68
SS18-203ENST00000415083 MSH4O15457 936 aa10.81□□□□□ -0.68
SS18-203ENST00000415083 HSD17B3P37058 310 aa10.81□□□□□ -0.68
SS18-203ENST00000415083 PRKCIP41743 596 aa10.81□□□□□ -0.68
SS18-203ENST00000415083 ASIC2Q16515 512 aa10.81□□□□□ -0.68
SS18-203ENST00000415083 RAB34Q9BZG1 259 aa10.81□□□□□ -0.68
SS18-203ENST00000415083 EPB41L4BQ9H329 900 aa10.81□□□□□ -0.68
SS18-203ENST00000415083 OSGEPQ9NPF4 335 aa10.81□□□□□ -0.68
SS18-203ENST00000415083 RGL1Q9NZL6 768 aa10.81□□□□□ -0.68
SS18-203ENST00000415083 SWAP70Q9UH65 585 aa10.81□□□□□ -0.68
SS18-203ENST00000415083 PCDHA1Q9Y5I3 950 aa10.81□□□□□ -0.68
SS18-203ENST00000415083 PITPNM2Q9BZ72 1349 aa10.81□□□□□ -0.68
SS18-203ENST00000415083 C6orf229H3BNL8 230 aa10.81□□□□□ -0.68
SS18-203ENST00000415083 CLIC2O15247 247 aa10.81□□□□□ -0.68
SS18-203ENST00000415083 GCFC2P16383 781 aaKnown RBP10.81□□□□□ -0.68
SS18-203ENST00000415083 PAFAH1B1P43034 410 aa10.81□□□□□ -0.68
SS18-203ENST00000415083 NAP1L1P55209 391 aaKnown RBP10.81□□□□□ -0.68
SS18-203ENST00000415083 ARHGAP4P98171 946 aa10.81□□□□□ -0.68
SS18-203ENST00000415083 BYSLQ13895 437 aaKnown RBP10.81□□□□□ -0.68
SS18-203ENST00000415083 KNOP1Q1ED39 458 aaKnown RBP10.81□□□□□ -0.68
SS18-203ENST00000415083 BMT2Q1RMZ1 405 aa10.81□□□□□ -0.68
SS18-203ENST00000415083 TADA2BQ86TJ2 420 aa10.81□□□□□ -0.68
SS18-203ENST00000415083 ATP8B4Q8TF62 1192 aa10.81□□□□□ -0.68
SS18-203ENST00000415083 MKL1Q969V6 931 aa10.81□□□□□ -0.68
SS18-203ENST00000415083 MYH11P35749 1972 aa10.8□□□□□ -0.68
SS18-203ENST00000415083 IGLV3-22A0A075B6J6 115 aa10.8□□□□□ -0.68
SS18-203ENST00000415083 KCNK3O14649 394 aa10.8□□□□□ -0.68
SS18-203ENST00000415083 LSP1P33241 339 aa10.8□□□□□ -0.68
SS18-203ENST00000415083 PRR16Q569H4 304 aa10.8□□□□□ -0.68
SS18-203ENST00000415083 NT5DC3Q86UY8 548 aa10.8□□□□□ -0.68
SS18-203ENST00000415083 CCDC65Q8IXS2 484 aa10.8□□□□□ -0.68
SS18-203ENST00000415083 IFT20Q8IY31 132 aa10.8□□□□□ -0.68
SS18-203ENST00000415083 RASGEF1CQ8N431 466 aa10.8□□□□□ -0.68
SS18-203ENST00000415083 CELF4Q9BZC1 486 aaKnown RBP10.8□□□□□ -0.68
SS18-203ENST00000415083 NT5C3AQ9H0P0 336 aa10.8□□□□□ -0.68
SS18-203ENST00000415083 DDX47Q9H0S4 455 aaKnown RBP10.8□□□□□ -0.68
SS18-203ENST00000415083 ISCUQ9H1K1 167 aa10.8□□□□□ -0.68
SS18-203ENST00000415083 TMBIM4Q9HC24 238 aa10.8□□□□□ -0.68
SS18-203ENST00000415083 TAS2R14Q9NYV8 317 aa10.8□□□□□ -0.68
SS18-203ENST00000415083 PLAAQ9Y263 795 aa10.8□□□□□ -0.68
SS18-203ENST00000415083 KDM3AQ9Y4C1 1321 aa10.8□□□□□ -0.68
SS18-203ENST00000415083 MYO1FO00160 1098 aa10.8□□□□□ -0.68
SS18-203ENST00000415083 LIG3P49916 1009 aa10.8□□□□□ -0.68
SS18-203ENST00000415083 MRPL12P52815 198 aaKnown RBP10.8□□□□□ -0.68
SS18-203ENST00000415083 CYP4A11Q02928 519 aa10.8□□□□□ -0.68
SS18-203ENST00000415083 Q4G0T1 1027 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms