RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 SHROOM1Q2M3G4 852 aaPredicted RBP12.17□□□□□ -0.46
PTPRF-204ENST00000412568 ZC2HC1CQ53FD0 456 aaPredicted RBP12.17□□□□□ -0.46
PTPRF-204ENST00000412568 PPP1R18Q6NYC8 613 aa12.17□□□□□ -0.46
PTPRF-204ENST00000412568 NT5C1BQ96P26 610 aa12.17□□□□□ -0.46
PTPRF-204ENST00000412568 FAM184BQ9ULE4 1060 aa12.17□□□□□ -0.46
PTPRF-204ENST00000412568 GOLGA6CA6NDK9 693 aa12.17□□□□□ -0.46
PTPRF-204ENST00000412568 SPDYE2BA6NHP3 402 aa12.17□□□□□ -0.46
PTPRF-204ENST00000412568 GOLGA6DP0CG33 693 aa12.17□□□□□ -0.46
PTPRF-204ENST00000412568 SPDYE6P0CI01 402 aa12.17□□□□□ -0.46
PTPRF-204ENST00000412568 TCP1P17987 556 aaKnown RBP12.17□□□□□ -0.46
PTPRF-204ENST00000412568 QARSP47897 775 aaKnown RBP12.17□□□□□ -0.46
PTPRF-204ENST00000412568 ZRSR2Q15696 482 aaKnown RBP12.17□□□□□ -0.46
PTPRF-204ENST00000412568 KNOP1Q1ED39 458 aaKnown RBP12.17□□□□□ -0.46
PTPRF-204ENST00000412568 LMBRD2Q68DH5 695 aaPredicted RBP12.17□□□□□ -0.46
PTPRF-204ENST00000412568 FMNL3Q8IVF7 1028 aa12.17□□□□□ -0.46
PTPRF-204ENST00000412568 RPGRIP1Q96KN7 1286 aa12.17□□□□□ -0.46
PTPRF-204ENST00000412568 GOLGA6AQ9NYA3 693 aa12.17□□□□□ -0.46
PTPRF-204ENST00000412568 WDR64B1ANS9 1081 aa12.17□□□□□ -0.46
PTPRF-204ENST00000412568 PSAPP07602 524 aa12.17□□□□□ -0.46
PTPRF-204ENST00000412568 PDE6CP51160 858 aa12.17□□□□□ -0.46
PTPRF-204ENST00000412568 YARSP54577 528 aaKnown RBP12.17□□□□□ -0.46
PTPRF-204ENST00000412568 ALKBH5Q6P6C2 394 aaKnown RBP12.17□□□□□ -0.46
PTPRF-204ENST00000412568 SCARA5Q6ZMJ2 495 aa12.17□□□□□ -0.46
PTPRF-204ENST00000412568 GUF1Q8N442 669 aaKnown RBP12.17□□□□□ -0.46
PTPRF-204ENST00000412568 SALL1Q9NSC2 1324 aa12.17□□□□□ -0.46
PTPRF-204ENST00000412568 HGSO14964 777 aaPredicted RBP12.16□□□□□ -0.46
PTPRF-204ENST00000412568 RHBDL3P58872 404 aa12.16□□□□□ -0.46
PTPRF-204ENST00000412568 NBPF12Q5TAG4 269 aaPredicted RBP12.16□□□□□ -0.46
PTPRF-204ENST00000412568 FAM160B1Q5W0V3 765 aa12.16□□□□□ -0.46
PTPRF-204ENST00000412568 ZNF746Q6NUN9 644 aaPredicted RBP12.16□□□□□ -0.46
PTPRF-204ENST00000412568 ZNF365Q70YC5 407 aa12.16□□□□□ -0.46
PTPRF-204ENST00000412568 SPON1Q9HCB6 807 aa12.16□□□□□ -0.46
PTPRF-204ENST00000412568 HDAC6Q9UBN7 1215 aa12.16□□□□□ -0.46
PTPRF-204ENST00000412568 PCDHA13Q9Y5I0 950 aa12.16□□□□□ -0.46
PTPRF-204ENST00000412568 IKBKGQ9Y6K9 419 aa12.16□□□□□ -0.46
PTPRF-204ENST00000412568 SLIT3O75094 1523 aa12.16□□□□□ -0.46
PTPRF-204ENST00000412568 DENND3A2RUS2 1198 aa12.16□□□□□ -0.46
PTPRF-204ENST00000412568 NPEPPSP55786 919 aa12.16□□□□□ -0.46
PTPRF-204ENST00000412568 SLC7A5Q01650 507 aa12.16□□□□□ -0.46
PTPRF-204ENST00000412568 GUCY2DQ02846 1103 aa12.16□□□□□ -0.46
PTPRF-204ENST00000412568 C2orf54Q08AI8 447 aa12.16□□□□□ -0.46
PTPRF-204ENST00000412568 STXBP2Q15833 593 aa12.16□□□□□ -0.46
PTPRF-204ENST00000412568 FBXL16Q8N461 479 aa12.16□□□□□ -0.46
PTPRF-204ENST00000412568 CDHR1Q96JP9 859 aa12.16□□□□□ -0.46
PTPRF-204ENST00000412568 KRT12Q99456 494 aa12.16□□□□□ -0.46
PTPRF-204ENST00000412568 REEP2Q9BRK0 252 aa12.16□□□□□ -0.46
PTPRF-204ENST00000412568 KCNK9Q9NPC2 374 aa12.16□□□□□ -0.46
PTPRF-204ENST00000412568 PCDHB4Q9Y5E5 795 aa12.16□□□□□ -0.46
PTPRF-204ENST00000412568 LTN1O94822 1766 aa12.16□□□□□ -0.46
PTPRF-204ENST00000412568 A0A087X0B3 334 aa12.16□□□□□ -0.46
PTPRF-204ENST00000412568 PDIA5Q14554 519 aa12.16□□□□□ -0.46
PTPRF-204ENST00000412568 KAZNQ674X7 775 aa12.16□□□□□ -0.46
PTPRF-204ENST00000412568 PLA2G4FQ68DD2 849 aa12.16□□□□□ -0.46
PTPRF-204ENST00000412568 TC2NQ8N9U0 490 aa12.16□□□□□ -0.46
PTPRF-204ENST00000412568 MTRF1LQ9UGC7 380 aaKnown RBP12.16□□□□□ -0.46
PTPRF-204ENST00000412568 UTP11Q9Y3A2 253 aaKnown RBP12.16□□□□□ -0.46
PTPRF-204ENST00000412568 KIF1AQ12756 1690 aa12.16□□□□□ -0.46
PTPRF-204ENST00000412568 A0A1B0GTH6 734 aa12.15□□□□□ -0.46
PTPRF-204ENST00000412568 P4HBP07237 508 aaKnown RBP12.15□□□□□ -0.46
PTPRF-204ENST00000412568 PNMA6AP0CW24 399 aaPredicted RBP12.15□□□□□ -0.46
PTPRF-204ENST00000412568 ATF7P17544 494 aaPredicted RBP12.15□□□□□ -0.46
PTPRF-204ENST00000412568 OSBPP22059 807 aa12.15□□□□□ -0.46
PTPRF-204ENST00000412568 HOXA10P31260 410 aaPredicted RBP12.15□□□□□ -0.46
PTPRF-204ENST00000412568 DMTNQ08495 405 aa12.15□□□□□ -0.46
PTPRF-204ENST00000412568 UAP1Q16222 522 aaPredicted RBP12.15□□□□□ -0.46
PTPRF-204ENST00000412568 ZSCAN26Q16670 478 aa12.15□□□□□ -0.46
PTPRF-204ENST00000412568 SCYL2Q6P3W7 929 aa12.15□□□□□ -0.46
PTPRF-204ENST00000412568 PSMD1Q99460 953 aa12.15□□□□□ -0.46
PTPRF-204ENST00000412568 MAK16Q9BXY0 300 aaKnown RBP12.15□□□□□ -0.46
PTPRF-204ENST00000412568 DISP2A7MBM2 1401 aa12.15□□□□□ -0.46
PTPRF-204ENST00000412568 HIP1RO75146 1068 aa12.15□□□□□ -0.46
PTPRF-204ENST00000412568 NR1I3Q14994 352 aa12.15□□□□□ -0.46
PTPRF-204ENST00000412568 DACT2Q5SW24 774 aa12.15□□□□□ -0.46
PTPRF-204ENST00000412568 CAPN12Q6ZSI9 719 aa12.15□□□□□ -0.46
PTPRF-204ENST00000412568 MSANTD4Q8NCY6 345 aa12.15□□□□□ -0.46
PTPRF-204ENST00000412568 FAM213AQ9BRX8 229 aa12.15□□□□□ -0.46
PTPRF-204ENST00000412568 TMEM206Q9H813 350 aa12.15□□□□□ -0.46
PTPRF-204ENST00000412568 TRIM10Q9UDY6 481 aa12.15□□□□□ -0.46
PTPRF-204ENST00000412568 TSKSQ9UJT2 592 aa12.15□□□□□ -0.46
PTPRF-204ENST00000412568 DNAJC12Q9UKB3 198 aa12.15□□□□□ -0.46
PTPRF-204ENST00000412568 PDS5AQ29RF7 1337 aaKnown RBP12.15□□□□□ -0.46
PTPRF-204ENST00000412568 NALCNQ8IZF0 1738 aa12.15□□□□□ -0.46
PTPRF-204ENST00000412568 ACTN1P12814 892 aa12.15□□□□□ -0.46
PTPRF-204ENST00000412568 TM4SF1P30408 202 aa12.15□□□□□ -0.46
PTPRF-204ENST00000412568 SSTR3P32745 418 aaPredicted RBP12.15□□□□□ -0.46
PTPRF-204ENST00000412568 RPS6P62753 249 aaKnown RBP12.15□□□□□ -0.46
PTPRF-204ENST00000412568 CCNA1P78396 465 aa12.15□□□□□ -0.46
PTPRF-204ENST00000412568 LACTBP83111 547 aaPredicted RBP12.15□□□□□ -0.46
PTPRF-204ENST00000412568 COG2Q14746 738 aa12.15□□□□□ -0.46
PTPRF-204ENST00000412568 ZNF280CQ8ND82 737 aa12.15□□□□□ -0.46
PTPRF-204ENST00000412568 PNMA2Q9UL42 364 aa12.15□□□□□ -0.46
PTPRF-204ENST00000412568 PACSIN2Q9UNF0 486 aaPredicted RBP12.15□□□□□ -0.46
PTPRF-204ENST00000412568 MRC1P22897 1456 aa12.15□□□□□ -0.47
PTPRF-204ENST00000412568 CCDC151A5D8V7 595 aa12.15□□□□□ -0.47
PTPRF-204ENST00000412568 RSPH10B2B2RC85 870 aa12.15□□□□□ -0.47
PTPRF-204ENST00000412568 RSPH10BP0C881 870 aa12.15□□□□□ -0.47
PTPRF-204ENST00000412568 MYBP10242 640 aa12.15□□□□□ -0.47
PTPRF-204ENST00000412568 NCAPHQ15003 741 aa12.15□□□□□ -0.47
PTPRF-204ENST00000412568 CCDC170Q8IYT3 715 aa12.15□□□□□ -0.47
PTPRF-204ENST00000412568 SYCE1Q8N0S2 351 aa12.15□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms