RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 TRAPPC3O43617 180 aa10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 TLL1O43897 1013 aa10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 TOM1O60784 492 aa10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 PRDX5P30044 214 aa10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 CDK17Q00537 523 aa10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 TCERG1LQ5VWI1 586 aa10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 C6orf89Q6UWU4 347 aa10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 DAAM2Q86T65 1068 aa10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 ZSCAN29Q8IWY8 852 aaPredicted RBP10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 TBCKQ8TEA7 893 aa10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 MLXIPLQ9NP71 852 aa10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 LUC7LQ9NQ29 371 aaKnown RBP10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 SAP30BPQ9UHR5 308 aaKnown RBP10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 CYTH3O43739 400 aa10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 KLRK1P26718 216 aa10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 KCNH2Q12809 1159 aa10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 CCDC38Q502W7 563 aa10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 LRCH2Q5VUJ6 765 aa10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 PPP4R3AQ6IN85 833 aa10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 INPP4AQ96PE3 977 aaPredicted RBP10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 DCP1AQ9NPI6 582 aaPredicted RBP10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 STK38LQ9Y2H1 464 aa10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 RGPD5Q99666 1765 aa10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 NID2Q14112 1375 aa10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 NAB2Q15742 525 aa10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 CENPPQ6IPU0 288 aa10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 TMED8Q6PL24 325 aaPredicted RBP10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 USP17L2Q6R6M4 530 aa10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 RUFY4Q6ZNE9 571 aa10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 SNX29Q8TEQ0 813 aa10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 ZNF384Q8TF68 577 aa10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 LRRC45Q96CN5 670 aa10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 TSG101Q99816 390 aa10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 ALG2Q9H553 416 aa10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.79□□□□□ -0.68
PTCHD4-202ENST00000398738 SLIT3O75094 1523 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 A0A1B0GUA9 196 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 KIF1CO43896 1103 aaKnown RBP10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 CAND2O75155 1236 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 MYBL1P10243 752 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 GCFC2P16383 781 aaKnown RBP10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 HSPA9P38646 679 aaKnown RBP10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 FIGNQ5HY92 759 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 SOGA3Q5TF21 947 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 MEI1Q5TIA1 1274 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 PRPF38BQ5VTL8 546 aaKnown RBP10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 RCSD1Q6JBY9 416 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 KCNK18Q7Z418 384 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 YTHDF3Q7Z739 585 aaKnown RBP10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 ANKS1AQ92625 1134 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 SLC4A9Q96Q91 983 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 FGFBP2Q9BYJ0 223 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 NOD2Q9HC29 1040 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 SEPT11Q9NVA2 429 aaKnown RBP10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 NIP7Q9Y221 180 aaKnown RBP eCLIP10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 USP54Q70EL1 1684 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 NPHP3-ACAD11A0A0J9YXS1 232 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 SERPING1P05155 500 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 TSPY3P0CV98 308 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 TSPY8P0CW00 308 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 ABCB4P21439 1286 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 LRRC14Q15048 493 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 ASIC2Q16515 512 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 SLC35G1Q2M3R5 365 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 CCDC152Q4G0S7 254 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 CAVIN4Q5BKX8 364 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 MORN1Q5T089 497 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 SMIM5Q71RC9 77 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 ZNF572Q7Z3I7 529 aaPredicted RBP10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 PEX26Q7Z412 305 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 KIF2BQ8N4N8 673 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 RNF10Q8N5U6 811 aaKnown RBP10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 CCDC63Q8NA47 563 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 NSMCE1Q8WV22 266 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 ISCUQ9H1K1 167 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 ACTR5Q9H9F9 607 aaPredicted RBP10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 PLCB1Q9NQ66 1216 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 SLC12A6Q9UHW9 1150 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 NOC2LQ9Y3T9 749 aaKnown RBP10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 ALS2Q96Q42 1657 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 BCL9LQ86UU0 1499 aa10.78□□□□□ -0.68
PTCHD4-202ENST00000398738 TNS3Q68CZ2 1445 aa10.77□□□□□ -0.68
PTCHD4-202ENST00000398738 FLT1P17948 1338 aa10.77□□□□□ -0.68
PTCHD4-202ENST00000398738 KLRF2D3W0D1 207 aa10.77□□□□□ -0.68
PTCHD4-202ENST00000398738 SHBGP04278 402 aa10.77□□□□□ -0.68
PTCHD4-202ENST00000398738 HNRNPH3P31942 346 aaKnown RBP10.77□□□□□ -0.68
PTCHD4-202ENST00000398738 GCKP35557 465 aa10.77□□□□□ -0.68
PTCHD4-202ENST00000398738 COPS2P61201 443 aa10.77□□□□□ -0.68
PTCHD4-202ENST00000398738 MECOMQ03112 1051 aa10.77□□□□□ -0.68
PTCHD4-202ENST00000398738 ADCY1Q08828 1119 aa10.77□□□□□ -0.68
PTCHD4-202ENST00000398738 ZNF211Q13398 564 aaPredicted RBP10.77□□□□□ -0.68
PTCHD4-202ENST00000398738 NONOQ15233 471 aaKnown RBP eCLIP10.77□□□□□ -0.68
PTCHD4-202ENST00000398738 ASTE1Q2TB18 679 aaPredicted RBP10.77□□□□□ -0.68
PTCHD4-202ENST00000398738 METTL13Q8N6R0 699 aa10.77□□□□□ -0.68
PTCHD4-202ENST00000398738 MICAL1Q8TDZ2 1067 aa10.77□□□□□ -0.68
PTCHD4-202ENST00000398738 LARP4BQ92615 738 aaKnown RBP10.77□□□□□ -0.68
PTCHD4-202ENST00000398738 C7orf25Q9BPX7 421 aa10.77□□□□□ -0.68
PTCHD4-202ENST00000398738 MMTAG2Q9BU76 263 aaKnown RBP10.77□□□□□ -0.68
PTCHD4-202ENST00000398738 CRNKL1Q9BZJ0 848 aaKnown RBP10.77□□□□□ -0.68
PTCHD4-202ENST00000398738 TRIM6Q9C030 488 aaPredicted RBP10.77□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms