RNA–Protein interactions for RNA: ENST00000378676.1

SHROOM1-202, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 2,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-202ENST00000378676 CWC15Q9P013 229 aaKnown RBP21.42■■□□□ 1.02
SHROOM1-202ENST00000378676 ARMCX3Q9UH62 379 aaPredicted RBP21.42■■□□□ 1.02
SHROOM1-202ENST00000378676 VGLL3A8MV65 326 aa21.41■■□□□ 1.02
SHROOM1-202ENST00000378676 EML1O00423 815 aa21.41■■□□□ 1.02
SHROOM1-202ENST00000378676 AKAP3O75969 853 aa21.41■■□□□ 1.02
SHROOM1-202ENST00000378676 AFPP02771 609 aaKnown RBP21.41■■□□□ 1.02
SHROOM1-202ENST00000378676 EPHB4P54760 987 aa21.41■■□□□ 1.02
SHROOM1-202ENST00000378676 PTK2Q05397 1052 aa21.41■■□□□ 1.02
SHROOM1-202ENST00000378676 RRP1BQ14684 758 aaKnown RBP21.41■■□□□ 1.02
SHROOM1-202ENST00000378676 ZNF571Q7Z3V5 609 aaPredicted RBP21.41■■□□□ 1.02
SHROOM1-202ENST00000378676 IRF2BP2Q7Z5L9 587 aa21.41■■□□□ 1.02
SHROOM1-202ENST00000378676 GOLGA6L1Q8N7Z2 621 aa21.41■■□□□ 1.02
SHROOM1-202ENST00000378676 GMCL1Q96IK5 515 aa21.41■■□□□ 1.02
SHROOM1-202ENST00000378676 BHMT2Q9H2M3 363 aa21.41■■□□□ 1.02
SHROOM1-202ENST00000378676 PLEKHA4Q9H4M7 779 aa21.41■■□□□ 1.02
SHROOM1-202ENST00000378676 ZSCAN5CA6NGD5 496 aaPredicted RBP21.41■■□□□ 1.02
SHROOM1-202ENST00000378676 POLD1P28340 1107 aa21.41■■□□□ 1.02
SHROOM1-202ENST00000378676 TNFRSF8P28908 595 aa21.41■■□□□ 1.02
SHROOM1-202ENST00000378676 CASP4P49662 377 aa21.41■■□□□ 1.02
SHROOM1-202ENST00000378676 DCAF17Q5H9S7 520 aaPredicted RBP21.41■■□□□ 1.02
SHROOM1-202ENST00000378676 MASTLQ96GX5 879 aa21.41■■□□□ 1.02
SHROOM1-202ENST00000378676 INPP4AQ96PE3 977 aaPredicted RBP21.41■■□□□ 1.02
SHROOM1-202ENST00000378676 UCHL3P15374 230 aa21.4■■□□□ 1.02
SHROOM1-202ENST00000378676 PON1P27169 355 aa21.4■■□□□ 1.02
SHROOM1-202ENST00000378676 KCNA1Q09470 495 aa21.4■■□□□ 1.02
SHROOM1-202ENST00000378676 RBM46Q8TBY0 533 aaKnown RBP21.4■■□□□ 1.02
SHROOM1-202ENST00000378676 ZFP91Q96JP5 570 aaPredicted RBP21.4■■□□□ 1.02
SHROOM1-202ENST00000378676 IKZF4Q9H2S9 585 aa21.4■■□□□ 1.02
SHROOM1-202ENST00000378676 PLCB1Q9NQ66 1216 aa21.4■■□□□ 1.02
SHROOM1-202ENST00000378676 ECE2O60344 883 aa21.4■■□□□ 1.02
SHROOM1-202ENST00000378676 GLI1P08151 1106 aa21.4■■□□□ 1.02
SHROOM1-202ENST00000378676 CIITAP33076 1130 aa21.4■■□□□ 1.02
SHROOM1-202ENST00000378676 ZNF622Q969S3 477 aaKnown RBP eCLIP21.4■■□□□ 1.02
SHROOM1-202ENST00000378676 FAM20AQ96MK3 541 aa21.4■■□□□ 1.02
SHROOM1-202ENST00000378676 RGL1Q9NZL6 768 aa21.4■■□□□ 1.02
SHROOM1-202ENST00000378676 A0A1W2PRG0 241 aa21.39■■□□□ 1.02
SHROOM1-202ENST00000378676 PDXKO00764 312 aa21.39■■□□□ 1.02
SHROOM1-202ENST00000378676 GH2P01242 217 aa21.39■■□□□ 1.02
SHROOM1-202ENST00000378676 NR3C1P04150 777 aa21.39■■□□□ 1.02
SHROOM1-202ENST00000378676 PDE6BP35913 854 aa21.39■■□□□ 1.02
SHROOM1-202ENST00000378676 EPHA7Q15375 998 aa21.39■■□□□ 1.02
SHROOM1-202ENST00000378676 STRIP1Q5VSL9 837 aa21.39■■□□□ 1.02
SHROOM1-202ENST00000378676 NLGN1Q8N2Q7 840 aa21.39■■□□□ 1.02
SHROOM1-202ENST00000378676 FBXO41Q8TF61 875 aa21.39■■□□□ 1.02
SHROOM1-202ENST00000378676 EIF2AK1Q9BQI3 630 aaKnown RBP21.39■■□□□ 1.02
SHROOM1-202ENST00000378676 SIX2Q9NPC8 291 aa21.39■■□□□ 1.02
SHROOM1-202ENST00000378676 ESYT3A0FGR9 886 aa21.39■■□□□ 1.01
SHROOM1-202ENST00000378676 CALUO43852 315 aaPredicted RBP21.39■■□□□ 1.01
SHROOM1-202ENST00000378676 FOSP01100 380 aaPredicted RBP21.39■■□□□ 1.01
SHROOM1-202ENST00000378676 IVLP07476 585 aa21.39■■□□□ 1.01
SHROOM1-202ENST00000378676 MMP10P09238 476 aa21.39■■□□□ 1.01
SHROOM1-202ENST00000378676 BMP3P12645 472 aa21.39■■□□□ 1.01
SHROOM1-202ENST00000378676 BMT2Q1RMZ1 405 aa21.39■■□□□ 1.01
SHROOM1-202ENST00000378676 EMBQ6PCB8 327 aa21.39■■□□□ 1.01
SHROOM1-202ENST00000378676 CAVIN3Q969G5 261 aa21.39■■□□□ 1.01
SHROOM1-202ENST00000378676 SPAG5Q96R06 1193 aa21.39■■□□□ 1.01
SHROOM1-202ENST00000378676 GOLPH3Q9H4A6 298 aa21.39■■□□□ 1.01
SHROOM1-202ENST00000378676 TDRD3Q9H7E2 651 aaKnown RBP21.39■■□□□ 1.01
SHROOM1-202ENST00000378676 TYW1Q9NV66 732 aaKnown RBP21.39■■□□□ 1.01
SHROOM1-202ENST00000378676 ZMYM2Q9UBW7 1377 aa21.39■■□□□ 1.01
SHROOM1-202ENST00000378676 CLIC2O15247 247 aa21.38■■□□□ 1.01
SHROOM1-202ENST00000378676 GCNT3O95395 438 aa21.38■■□□□ 1.01
SHROOM1-202ENST00000378676 XRCC5P13010 732 aaKnown RBP21.38■■□□□ 1.01
SHROOM1-202ENST00000378676 RNASE9P60153 205 aaKnown RBP21.38■■□□□ 1.01
SHROOM1-202ENST00000378676 EXOC3L4Q17RC7 722 aa21.38■■□□□ 1.01
SHROOM1-202ENST00000378676 MCTP2Q6DN12 878 aa21.38■■□□□ 1.01
SHROOM1-202ENST00000378676 POTEAQ6S8J7 498 aa21.38■■□□□ 1.01
SHROOM1-202ENST00000378676 SPICE1Q8N0Z3 855 aa21.38■■□□□ 1.01
SHROOM1-202ENST00000378676 SH3GL2Q99962 352 aa21.38■■□□□ 1.01
SHROOM1-202ENST00000378676 MRIQ9BWK5 157 aa21.38■■□□□ 1.01
SHROOM1-202ENST00000378676 TMX4Q9H1E5 349 aaPredicted RBP21.38■■□□□ 1.01
SHROOM1-202ENST00000378676 ZNF219Q9P2Y4 722 aaPredicted RBP21.38■■□□□ 1.01
SHROOM1-202ENST00000378676 RNF14Q9UBS8 474 aa21.38■■□□□ 1.01
SHROOM1-202ENST00000378676 IGLV3-22A0A075B6J6 115 aa21.38■■□□□ 1.01
SHROOM1-202ENST00000378676 GOLGA6CA6NDK9 693 aa21.38■■□□□ 1.01
SHROOM1-202ENST00000378676 HEXIM1O94992 359 aaKnown RBP21.38■■□□□ 1.01
SHROOM1-202ENST00000378676 GOLGA6DP0CG33 693 aa21.38■■□□□ 1.01
SHROOM1-202ENST00000378676 CARSP49589 748 aaKnown RBP21.38■■□□□ 1.01
SHROOM1-202ENST00000378676 GLE1Q53GS7 698 aaKnown RBP21.38■■□□□ 1.01
SHROOM1-202ENST00000378676 TCERG1LQ5VWI1 586 aa21.38■■□□□ 1.01
SHROOM1-202ENST00000378676 GDF3Q9NR23 364 aa21.38■■□□□ 1.01
SHROOM1-202ENST00000378676 GOLGA6AQ9NYA3 693 aa21.38■■□□□ 1.01
SHROOM1-202ENST00000378676 RABGAP1Q9Y3P9 1069 aa21.38■■□□□ 1.01
SHROOM1-202ENST00000378676 SFI1A8K8P3 1242 aa21.37■■□□□ 1.01
SHROOM1-202ENST00000378676 EYA4O95677 639 aa21.37■■□□□ 1.01
SHROOM1-202ENST00000378676 HDLBPQ00341 1268 aaKnown RBP21.37■■□□□ 1.01
SHROOM1-202ENST00000378676 GJB7Q6PEY0 223 aa21.37■■□□□ 1.01
SHROOM1-202ENST00000378676 SRLQ86TD4 932 aa21.37■■□□□ 1.01
SHROOM1-202ENST00000378676 FAM76AQ8TAV0 307 aa21.37■■□□□ 1.01
SHROOM1-202ENST00000378676 SLC35C1Q96A29 364 aa21.37■■□□□ 1.01
SHROOM1-202ENST00000378676 KRT12Q99456 494 aa21.37■■□□□ 1.01
SHROOM1-202ENST00000378676 POLR3CQ9BUI4 534 aaPredicted RBP21.37■■□□□ 1.01
SHROOM1-202ENST00000378676 WDR18Q9BV38 432 aa21.37■■□□□ 1.01
SHROOM1-202ENST00000378676 PRR12Q9ULL5 1215 aa21.37■■□□□ 1.01
SHROOM1-202ENST00000378676 TBCAO75347 108 aaKnown RBP21.37■■□□□ 1.01
SHROOM1-202ENST00000378676 FAM153BP0C7A2 387 aa21.37■■□□□ 1.01
SHROOM1-202ENST00000378676 FKBP1AP62942 108 aaKnown RBP21.37■■□□□ 1.01
SHROOM1-202ENST00000378676 CTTNQ14247 550 aaKnown RBP21.37■■□□□ 1.01
SHROOM1-202ENST00000378676 FAM153CQ494X1 144 aa21.37■■□□□ 1.01
SHROOM1-202ENST00000378676 BTNL9Q6UXG8 535 aa21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms