RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 SFR1Q86XK3 245 aa20.03■□□□□ 0.8
PCDH1-201ENST00000287008 ARHGAP24Q8N264 748 aa20.03■□□□□ 0.8
PCDH1-201ENST00000287008 TROVE2P10155 538 aaKnown RBP eCLIP20.03■□□□□ 0.8
PCDH1-201ENST00000287008 TEX13BQ9BXU2 312 aa20.03■□□□□ 0.8
PCDH1-201ENST00000287008 C2orf40Q9H1Z8 148 aa20.03■□□□□ 0.8
PCDH1-201ENST00000287008 MGARPQ8TDB4 240 aa20.02■□□□□ 0.8
PCDH1-201ENST00000287008 LPAR1Q92633 364 aa20.02■□□□□ 0.8
PCDH1-201ENST00000287008 DYDC2Q96IM9 177 aa20.02■□□□□ 0.8
PCDH1-201ENST00000287008 HACL1Q9UJ83 578 aa20.02■□□□□ 0.8
PCDH1-201ENST00000287008 GSTA1P08263 222 aa20.02■□□□□ 0.8
PCDH1-201ENST00000287008 GSTA2P09210 222 aa20.02■□□□□ 0.8
PCDH1-201ENST00000287008 KIF9Q9HAQ2 790 aa20.02■□□□□ 0.8
PCDH1-201ENST00000287008 PTPRUQ92729 1446 aa20.02■□□□□ 0.8
PCDH1-201ENST00000287008 PSMC5P62195 406 aa20.02■□□□□ 0.8
PCDH1-201ENST00000287008 ITPK1Q13572 414 aa20.02■□□□□ 0.8
PCDH1-201ENST00000287008 PSMD6Q15008 389 aa20.02■□□□□ 0.8
PCDH1-201ENST00000287008 ZNF579Q8NAF0 562 aaKnown RBP20.02■□□□□ 0.8
PCDH1-201ENST00000287008 SCYL1Q96KG9 808 aa20.02■□□□□ 0.8
PCDH1-201ENST00000287008 CD163L1Q9NR16 1453 aa20.02■□□□□ 0.79
PCDH1-201ENST00000287008 GARSP41250 739 aaKnown RBP20.02■□□□□ 0.79
PCDH1-201ENST00000287008 PDE1BQ01064 536 aa20.02■□□□□ 0.79
PCDH1-201ENST00000287008 DNAAF3Q8N9W5 541 aa20.02■□□□□ 0.79
PCDH1-201ENST00000287008 PRPF31Q8WWY3 499 aaKnown RBP20.02■□□□□ 0.79
PCDH1-201ENST00000287008 SPATA33Q96N06 139 aa20.02■□□□□ 0.79
PCDH1-201ENST00000287008 SLC8A2Q9UPR5 921 aa20.02■□□□□ 0.79
PCDH1-201ENST00000287008 LRRD1A4D1F6 860 aa20.01■□□□□ 0.79
PCDH1-201ENST00000287008 E9PMD0 336 aa20.01■□□□□ 0.79
PCDH1-201ENST00000287008 PPFIA4O75335 1185 aa20.01■□□□□ 0.79
PCDH1-201ENST00000287008 KRT1P04264 644 aa20.01■□□□□ 0.79
PCDH1-201ENST00000287008 ACTN1P12814 892 aa20.01■□□□□ 0.79
PCDH1-201ENST00000287008 CCDC13Q8IYE1 715 aa20.01■□□□□ 0.79
PCDH1-201ENST00000287008 THEM5Q8N1Q8 247 aa20.01■□□□□ 0.79
PCDH1-201ENST00000287008 TMEM260Q9NX78 707 aa20.01■□□□□ 0.79
PCDH1-201ENST00000287008 POLIQ9UNA4 740 aa20.01■□□□□ 0.79
PCDH1-201ENST00000287008 GDAQ9Y2T3 454 aa20.01■□□□□ 0.79
PCDH1-201ENST00000287008 PVALEFA0A1B0GWK0 134 aa20.01■□□□□ 0.79
PCDH1-201ENST00000287008 MTMR2Q13614 643 aa20.01■□□□□ 0.79
PCDH1-201ENST00000287008 HHIPL2Q6UWX4 724 aa20.01■□□□□ 0.79
PCDH1-201ENST00000287008 UHMK1Q8TAS1 419 aaKnown RBP20.01■□□□□ 0.79
PCDH1-201ENST00000287008 POTEB3A0JP26 581 aa20.01■□□□□ 0.79
PCDH1-201ENST00000287008 EFCAB8A8MWE9 144 aa20.01■□□□□ 0.79
PCDH1-201ENST00000287008 POTECB2RU33 542 aa20.01■□□□□ 0.79
PCDH1-201ENST00000287008 C19orf81C9J6K1 198 aa20.01■□□□□ 0.79
PCDH1-201ENST00000287008 POTEBQ6S5H4 581 aa20.01■□□□□ 0.79
PCDH1-201ENST00000287008 ERICH1Q86X53 443 aa20.01■□□□□ 0.79
PCDH1-201ENST00000287008 CCDC170Q8IYT3 715 aa20.01■□□□□ 0.79
PCDH1-201ENST00000287008 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP20.01■□□□□ 0.79
PCDH1-201ENST00000287008 MTRQ99707 1265 aa20.01■□□□□ 0.79
PCDH1-201ENST00000287008 HUS1O60921 280 aa20■□□□□ 0.79
PCDH1-201ENST00000287008 CSF1RP07333 972 aa20■□□□□ 0.79
PCDH1-201ENST00000287008 EIF4A3P38919 411 aaKnown RBP20■□□□□ 0.79
PCDH1-201ENST00000287008 USP11P51784 963 aa20■□□□□ 0.79
PCDH1-201ENST00000287008 ARL13BQ3SXY8 428 aa20■□□□□ 0.79
PCDH1-201ENST00000287008 SGO2Q562F6 1265 aa20■□□□□ 0.79
PCDH1-201ENST00000287008 RSBN1LQ6PCB5 846 aaPredicted RBP20■□□□□ 0.79
PCDH1-201ENST00000287008 EFCAB13Q8IY85 973 aa20■□□□□ 0.79
PCDH1-201ENST00000287008 SLC35F6Q8N357 371 aa20■□□□□ 0.79
PCDH1-201ENST00000287008 NGRNQ9NPE2 291 aaKnown RBP20■□□□□ 0.79
PCDH1-201ENST00000287008 CNTNAP4Q9C0A0 1308 aa20■□□□□ 0.79
PCDH1-201ENST00000287008 SLC15A2Q16348 729 aa20■□□□□ 0.79
PCDH1-201ENST00000287008 C10orf76Q5T2E6 689 aa20■□□□□ 0.79
PCDH1-201ENST00000287008 ZNF449Q6P9G9 518 aa20■□□□□ 0.79
PCDH1-201ENST00000287008 RAET1EQ8TD07 263 aa20■□□□□ 0.79
PCDH1-201ENST00000287008 SEL1LQ9UBV2 794 aa20■□□□□ 0.79
PCDH1-201ENST00000287008 CDC23Q9UJX2 597 aa20■□□□□ 0.79
PCDH1-201ENST00000287008 WDR46O15213 610 aaKnown RBP20■□□□□ 0.79
PCDH1-201ENST00000287008 GUCY2DQ02846 1103 aa20■□□□□ 0.79
PCDH1-201ENST00000287008 GGA3Q9NZ52 723 aa20■□□□□ 0.79
PCDH1-201ENST00000287008 DAAM1Q9Y4D1 1078 aa20■□□□□ 0.79
PCDH1-201ENST00000287008 ZBBXA8MT70 800 aa20■□□□□ 0.79
PCDH1-201ENST00000287008 SLC16A4O15374 487 aa20■□□□□ 0.79
PCDH1-201ENST00000287008 SERPING1P05155 500 aa20■□□□□ 0.79
PCDH1-201ENST00000287008 HSPA6P17066 643 aa20■□□□□ 0.79
PCDH1-201ENST00000287008 CDC27P30260 824 aa20■□□□□ 0.79
PCDH1-201ENST00000287008 TSTA3Q13630 321 aaPredicted RBP20■□□□□ 0.79
PCDH1-201ENST00000287008 LLGL1Q15334 1064 aa20■□□□□ 0.79
PCDH1-201ENST00000287008 ANGEL2Q5VTE6 544 aaKnown RBP20■□□□□ 0.79
PCDH1-201ENST00000287008 RESP18Q5W5W9 173 aa20■□□□□ 0.79
PCDH1-201ENST00000287008 ALKBH5Q6P6C2 394 aaKnown RBP20■□□□□ 0.79
PCDH1-201ENST00000287008 KCNV1Q6PIU1 500 aa20■□□□□ 0.79
PCDH1-201ENST00000287008 RHPN2Q8IUC4 686 aa20■□□□□ 0.79
PCDH1-201ENST00000287008 OXER1Q8TDS5 423 aa20■□□□□ 0.79
PCDH1-201ENST00000287008 MTMR4Q9NYA4 1195 aa20■□□□□ 0.79
PCDH1-201ENST00000287008 PCDHA10Q9Y5I2 948 aa20■□□□□ 0.79
PCDH1-201ENST00000287008 UNC13BO14795 1591 aa20■□□□□ 0.79
PCDH1-201ENST00000287008 MAP7Q14244 749 aa19.99■□□□□ 0.79
PCDH1-201ENST00000287008 CEP55Q53EZ4 464 aa19.99■□□□□ 0.79
PCDH1-201ENST00000287008 ARHGEF2Q92974 986 aaKnown RBP19.99■□□□□ 0.79
PCDH1-201ENST00000287008 ABCA9Q8IUA7 1624 aa19.99■□□□□ 0.79
PCDH1-201ENST00000287008 SPHKAPQ2M3C7 1700 aa19.99■□□□□ 0.79
PCDH1-201ENST00000287008 NTSR2O95665 410 aa19.99■□□□□ 0.79
PCDH1-201ENST00000287008 INHBAP08476 426 aa19.99■□□□□ 0.79
PCDH1-201ENST00000287008 BEST2Q8NFU1 509 aa19.99■□□□□ 0.79
PCDH1-201ENST00000287008 FAM151AQ8WW52 585 aa19.99■□□□□ 0.79
PCDH1-201ENST00000287008 DONSONQ9NYP3 566 aa19.99■□□□□ 0.79
PCDH1-201ENST00000287008 KCNH4Q9UQ05 1017 aa19.99■□□□□ 0.79
PCDH1-201ENST00000287008 JRKLQ9Y4A0 524 aa19.99■□□□□ 0.79
PCDH1-201ENST00000287008 PGRMC1O00264 195 aaKnown RBP19.99■□□□□ 0.79
PCDH1-201ENST00000287008 TTC1Q99614 292 aa19.99■□□□□ 0.79
PCDH1-201ENST00000287008 GCOM2Q9BZD3 368 aaPredicted RBP19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms