RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 PLPPR4Q7Z2D5 763 aa14.53□□□□□ -0.08
CD44-203ENST00000278386 PLA2G4DQ86XP0 818 aa14.53□□□□□ -0.08
CD44-203ENST00000278386 AGO3Q9H9G7 860 aaKnown RBP14.53□□□□□ -0.08
CD44-203ENST00000278386 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.52□□□□□ -0.09
CD44-203ENST00000278386 CCDC196A0A1B0GTZ2 297 aa14.52□□□□□ -0.09
CD44-203ENST00000278386 ENPP3O14638 875 aa14.52□□□□□ -0.09
CD44-203ENST00000278386 SCG2P13521 617 aa14.52□□□□□ -0.09
CD44-203ENST00000278386 IL9P15248 144 aa14.52□□□□□ -0.09
CD44-203ENST00000278386 SSTR3P32745 418 aaPredicted RBP14.52□□□□□ -0.09
CD44-203ENST00000278386 ADD1P35611 737 aaKnown RBP14.52□□□□□ -0.09
CD44-203ENST00000278386 PFKFB3Q16875 520 aaPredicted RBP14.52□□□□□ -0.09
CD44-203ENST00000278386 Q6ZUG5 572 aa14.52□□□□□ -0.09
CD44-203ENST00000278386 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.52□□□□□ -0.09
CD44-203ENST00000278386 CCDC12Q8WUD4 166 aaPredicted RBP14.52□□□□□ -0.09
CD44-203ENST00000278386 LINC01599Q8WXQ3 324 aa14.52□□□□□ -0.09
CD44-203ENST00000278386 BRF1Q92994 677 aa14.52□□□□□ -0.09
CD44-203ENST00000278386 JAKMIP1Q96N16 626 aaKnown RBP14.52□□□□□ -0.09
CD44-203ENST00000278386 UIMC1Q96RL1 719 aa14.52□□□□□ -0.09
CD44-203ENST00000278386 FTHL17Q9BXU8 183 aa14.52□□□□□ -0.09
CD44-203ENST00000278386 EPHX3Q9H6B9 360 aa14.52□□□□□ -0.09
CD44-203ENST00000278386 RC3H2Q9HBD1 1191 aaKnown RBP14.52□□□□□ -0.09
CD44-203ENST00000278386 FAM217BQ9NTX9 383 aaPredicted RBP14.52□□□□□ -0.09
CD44-203ENST00000278386 CLDND1Q9NY35 253 aa14.52□□□□□ -0.09
CD44-203ENST00000278386 GINS2Q9Y248 185 aa14.52□□□□□ -0.09
CD44-203ENST00000278386 PCDHA2Q9Y5H9 948 aa14.52□□□□□ -0.09
CD44-203ENST00000278386 IGSF9BQ9UPX0 1349 aa14.51□□□□□ -0.09
CD44-203ENST00000278386 SMIM35A0A1B0GVV1 85 aa14.51□□□□□ -0.09
CD44-203ENST00000278386 FAM86B1E9PN63 330 aa14.51□□□□□ -0.09
CD44-203ENST00000278386 MEIS1O00470 390 aa14.51□□□□□ -0.09
CD44-203ENST00000278386 RB1P06400 928 aa14.51□□□□□ -0.09
CD44-203ENST00000278386 FAM86B2P0C5J1 330 aa14.51□□□□□ -0.09
CD44-203ENST00000278386 BMPR1AP36894 532 aa14.51□□□□□ -0.09
CD44-203ENST00000278386 SLC26A2P50443 739 aa14.51□□□□□ -0.09
CD44-203ENST00000278386 SETQ01105 290 aaPredicted RBP14.51□□□□□ -0.09
CD44-203ENST00000278386 AKAP17AQ02040 695 aaKnown RBP14.51□□□□□ -0.09
CD44-203ENST00000278386 PAN2Q504Q3 1202 aaKnown RBP14.51□□□□□ -0.09
CD44-203ENST00000278386 MIS18BP1Q6P0N0 1132 aa14.51□□□□□ -0.09
CD44-203ENST00000278386 PDXDC2PQ6P474 469 aa14.51□□□□□ -0.09
CD44-203ENST00000278386 BLOC1S2Q6QNY1 142 aa14.51□□□□□ -0.09
CD44-203ENST00000278386 MTHFD1LQ6UB35 978 aa14.51□□□□□ -0.09
CD44-203ENST00000278386 NIPA1Q7RTP0 329 aa14.51□□□□□ -0.09
CD44-203ENST00000278386 NPAS4Q8IUM7 802 aa14.51□□□□□ -0.09
CD44-203ENST00000278386 CCDC60Q8IWA6 550 aaPredicted RBP14.51□□□□□ -0.09
CD44-203ENST00000278386 CKAP2LQ8IYA6 745 aa14.51□□□□□ -0.09
CD44-203ENST00000278386 REXO1Q8N1G1 1221 aaKnown RBP14.51□□□□□ -0.09
CD44-203ENST00000278386 PABPC5Q96DU9 382 aaKnown RBP14.51□□□□□ -0.09
CD44-203ENST00000278386 LMAN2LQ9H0V9 348 aa14.51□□□□□ -0.09
CD44-203ENST00000278386 ZNF302Q9NR11 478 aa14.51□□□□□ -0.09
CD44-203ENST00000278386 LRFN2Q9ULH4 789 aa14.51□□□□□ -0.09
CD44-203ENST00000278386 PADI3Q9ULW8 664 aa14.51□□□□□ -0.09
CD44-203ENST00000278386 SQORQ9Y6N5 450 aa14.51□□□□□ -0.09
CD44-203ENST00000278386 COL1A2P08123 1366 aa14.5□□□□□ -0.09
CD44-203ENST00000278386 NID2Q14112 1375 aa14.5□□□□□ -0.09
CD44-203ENST00000278386 C5orf67F2Z3F1 127 aa14.5□□□□□ -0.09
CD44-203ENST00000278386 GRM6O15303 877 aa14.5□□□□□ -0.09
CD44-203ENST00000278386 HBP1O60381 514 aa14.5□□□□□ -0.09
CD44-203ENST00000278386 CCNE2O96020 404 aa14.5□□□□□ -0.09
CD44-203ENST00000278386 STAG3L1P0CL83 205 aa14.5□□□□□ -0.09
CD44-203ENST00000278386 KRT76Q01546 638 aa14.5□□□□□ -0.09
CD44-203ENST00000278386 TMEM266Q2M3C6 531 aa14.5□□□□□ -0.09
CD44-203ENST00000278386 PUS10Q3MIT2 529 aaKnown RBP14.5□□□□□ -0.09
CD44-203ENST00000278386 TMEM31Q5JXX7 168 aa14.5□□□□□ -0.09
CD44-203ENST00000278386 FAM178BQ8IXR5 827 aa14.5□□□□□ -0.09
CD44-203ENST00000278386 CMTR2Q8IYT2 770 aaKnown RBP14.5□□□□□ -0.09
CD44-203ENST00000278386 ATP8B4Q8TF62 1192 aa14.5□□□□□ -0.09
CD44-203ENST00000278386 KHSRPQ92945 711 aaKnown RBP eCLIP14.5□□□□□ -0.09
CD44-203ENST00000278386 CLP1Q92989 425 aaKnown RBP14.5□□□□□ -0.09
CD44-203ENST00000278386 ZNF689Q96CS4 500 aaPredicted RBP14.5□□□□□ -0.09
CD44-203ENST00000278386 PPP1R16BQ96T49 567 aa14.5□□□□□ -0.09
CD44-203ENST00000278386 ZNF577Q9BSK1 485 aa14.5□□□□□ -0.09
CD44-203ENST00000278386 CELF4Q9BZC1 486 aaKnown RBP14.5□□□□□ -0.09
CD44-203ENST00000278386 C6orf50Q9HD87 102 aa14.5□□□□□ -0.09
CD44-203ENST00000278386 FAM50BQ9Y247 325 aa14.5□□□□□ -0.09
CD44-203ENST00000278386 KDM3AQ9Y4C1 1321 aa14.49□□□□□ -0.09
CD44-203ENST00000278386 ESYT2A0FGR8 921 aa14.49□□□□□ -0.09
CD44-203ENST00000278386 FAM86C2PA6NEL3 165 aa14.49□□□□□ -0.09
CD44-203ENST00000278386 IPO5O00410 1097 aaKnown RBP14.49□□□□□ -0.09
CD44-203ENST00000278386 DGKIO75912 1065 aa14.49□□□□□ -0.09
CD44-203ENST00000278386 ATG7O95352 703 aa14.49□□□□□ -0.09
CD44-203ENST00000278386 LINC00271P0C7V0 271 aa14.49□□□□□ -0.09
CD44-203ENST00000278386 KLRC1P26715 233 aa14.49□□□□□ -0.09
CD44-203ENST00000278386 NFX1Q12986 1120 aaKnown RBP14.49□□□□□ -0.09
CD44-203ENST00000278386 ABHD15Q6UXT9 468 aa14.49□□□□□ -0.09
CD44-203ENST00000278386 TRMT1LQ7Z2T5 733 aaKnown RBP14.49□□□□□ -0.09
CD44-203ENST00000278386 GJD3Q8N144 294 aa14.49□□□□□ -0.09
CD44-203ENST00000278386 NME8Q8N427 588 aa14.49□□□□□ -0.09
CD44-203ENST00000278386 CCDC148Q8NFR7 591 aa14.49□□□□□ -0.09
CD44-203ENST00000278386 NEK9Q8TD19 979 aa14.49□□□□□ -0.09
CD44-203ENST00000278386 PHKBQ93100 1093 aa14.49□□□□□ -0.09
CD44-203ENST00000278386 ZMYND12Q9H0C1 365 aa14.49□□□□□ -0.09
CD44-203ENST00000278386 HCN4Q9Y3Q4 1203 aa14.49□□□□□ -0.09
CD44-203ENST00000278386 SNX14Q9Y5W7 946 aa14.49□□□□□ -0.09
CD44-203ENST00000278386 MRPL42Q9Y6G3 142 aaKnown RBP14.49□□□□□ -0.09
CD44-203ENST00000278386 IGLV3-22A0A075B6J6 115 aa14.48□□□□□ -0.09
CD44-203ENST00000278386 IGKV6D-21A0A0A0MT36 114 aa14.48□□□□□ -0.09
CD44-203ENST00000278386 DENND3A2RUS2 1198 aa14.48□□□□□ -0.09
CD44-203ENST00000278386 GRXCR2A6NFK2 248 aa14.48□□□□□ -0.09
CD44-203ENST00000278386 PPFIA3O75145 1194 aa14.48□□□□□ -0.09
CD44-203ENST00000278386 RPS6KA5O75582 802 aa14.48□□□□□ -0.09
CD44-203ENST00000278386 MMP1P03956 469 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms