RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 ZNF571Q7Z3V5 609 aaPredicted RBP18.24■□□□□ 0.51
VPS54-201ENST00000272322 DDX42Q86XP3 938 aaKnown RBP eCLIP18.24■□□□□ 0.51
VPS54-201ENST00000272322 SH2D3CQ8N5H7 860 aa18.24■□□□□ 0.51
VPS54-201ENST00000272322 U2AF1L4Q8WU68 220 aaKnown RBP18.24■□□□□ 0.51
VPS54-201ENST00000272322 FAM84AQ96KN4 292 aa18.24■□□□□ 0.51
VPS54-201ENST00000272322 PURBQ96QR8 312 aaKnown RBP18.24■□□□□ 0.51
VPS54-201ENST00000272322 GCNT4Q9P109 453 aa18.24■□□□□ 0.51
VPS54-201ENST00000272322 CEP72Q9P209 647 aa18.24■□□□□ 0.51
VPS54-201ENST00000272322 FZD1Q9UP38 647 aa18.24■□□□□ 0.51
VPS54-201ENST00000272322 ABCB11O95342 1321 aa18.24■□□□□ 0.51
VPS54-201ENST00000272322 SPATA31A6Q5VVP1 1343 aa18.24■□□□□ 0.51
VPS54-201ENST00000272322 GOLGA6BA6NDN3 693 aa18.24■□□□□ 0.51
VPS54-201ENST00000272322 YDJCA8MPS7 323 aa18.24■□□□□ 0.51
VPS54-201ENST00000272322 CEP104O60308 925 aa18.24■□□□□ 0.51
VPS54-201ENST00000272322 SYF2O95926 243 aaKnown RBP18.24■□□□□ 0.51
VPS54-201ENST00000272322 NR3C1P04150 777 aa18.24■□□□□ 0.51
VPS54-201ENST00000272322 GLI1P08151 1106 aa18.24■□□□□ 0.51
VPS54-201ENST00000272322 STRIP1Q5VSL9 837 aa18.24■□□□□ 0.51
VPS54-201ENST00000272322 SLFN12Q8IYM2 578 aa18.24■□□□□ 0.51
VPS54-201ENST00000272322 WDR18Q9BV38 432 aa18.24■□□□□ 0.51
VPS54-201ENST00000272322 MYH7BA7E2Y1 1941 aa18.24■□□□□ 0.51
VPS54-201ENST00000272322 SHTN1A0MZ66 631 aa18.24■□□□□ 0.51
VPS54-201ENST00000272322 CLSTN1O94985 981 aa18.24■□□□□ 0.51
VPS54-201ENST00000272322 FAM153BP0C7A2 387 aa18.24■□□□□ 0.51
VPS54-201ENST00000272322 UCHL3P15374 230 aa18.24■□□□□ 0.51
VPS54-201ENST00000272322 USP11P51784 963 aa18.24■□□□□ 0.51
VPS54-201ENST00000272322 STAT2P52630 851 aa18.24■□□□□ 0.51
VPS54-201ENST00000272322 SPIRE1Q08AE8 756 aa18.24■□□□□ 0.51
VPS54-201ENST00000272322 FAM153CQ494X1 144 aa18.24■□□□□ 0.51
VPS54-201ENST00000272322 SYCP3Q8IZU3 236 aa18.24■□□□□ 0.51
VPS54-201ENST00000272322 NYAP2Q9P242 653 aa18.24■□□□□ 0.51
VPS54-201ENST00000272322 FAM153AQ9UHL3 310 aa18.24■□□□□ 0.51
VPS54-201ENST00000272322 DLEC1Q9Y238 1755 aa18.24■□□□□ 0.51
VPS54-201ENST00000272322 GAS7O60861 476 aa18.23■□□□□ 0.51
VPS54-201ENST00000272322 SERPING1P05155 500 aa18.23■□□□□ 0.51
VPS54-201ENST00000272322 COPB2P35606 906 aa18.23■□□□□ 0.51
VPS54-201ENST00000272322 SF3A3Q12874 501 aaKnown RBP eCLIP18.23■□□□□ 0.516e-7■■■■□ 21.5
VPS54-201ENST00000272322 ADAMTSL1Q8N6G6 1762 aa18.23■□□□□ 0.51
VPS54-201ENST00000272322 KRT14P02533 472 aa18.23■□□□□ 0.51
VPS54-201ENST00000272322 MAP9Q49MG5 647 aa18.23■□□□□ 0.51
VPS54-201ENST00000272322 FIGNQ5HY92 759 aa18.23■□□□□ 0.51
VPS54-201ENST00000272322 TSEN2Q8NCE0 465 aaKnown RBP18.23■□□□□ 0.51
VPS54-201ENST00000272322 AGBL1Q96MI9 1066 aa18.23■□□□□ 0.51
VPS54-201ENST00000272322 WRAP73Q9P2S5 460 aaPredicted RBP18.23■□□□□ 0.51
VPS54-201ENST00000272322 SBF2Q86WG5 1849 aa18.23■□□□□ 0.51
VPS54-201ENST00000272322 KLRG2A4D1S0 409 aaPredicted RBP18.22■□□□□ 0.51
VPS54-201ENST00000272322 TXLNBQ8N3L3 684 aa18.22■□□□□ 0.51
VPS54-201ENST00000272322 RBM46Q8TBY0 533 aaKnown RBP18.22■□□□□ 0.51
VPS54-201ENST00000272322 CALCOCO1Q9P1Z2 691 aa18.22■□□□□ 0.51
VPS54-201ENST00000272322 ODR4Q5SWX8 454 aa18.22■□□□□ 0.51
VPS54-201ENST00000272322 DCAF4Q8WV16 495 aa18.22■□□□□ 0.51
VPS54-201ENST00000272322 TMOD2Q9NZR1 351 aa18.22■□□□□ 0.51
VPS54-201ENST00000272322 HEXIM1O94992 359 aaKnown RBP18.22■□□□□ 0.51
VPS54-201ENST00000272322 RPA1P27694 616 aa18.22■□□□□ 0.51
VPS54-201ENST00000272322 RINT1Q6NUQ1 792 aa18.22■□□□□ 0.51
VPS54-201ENST00000272322 WDR93Q6P2C0 686 aa18.22■□□□□ 0.51
VPS54-201ENST00000272322 LARGE2Q8N3Y3 721 aa18.22■□□□□ 0.51
VPS54-201ENST00000272322 AFPP02771 609 aaKnown RBP18.21■□□□□ 0.51
VPS54-201ENST00000272322 PON1P27169 355 aa18.21■□□□□ 0.51
VPS54-201ENST00000272322 PPP1R18Q6NYC8 613 aa18.21■□□□□ 0.51
VPS54-201ENST00000272322 ALKBH5Q6P6C2 394 aaKnown RBP18.21■□□□□ 0.51
VPS54-201ENST00000272322 HOOK2Q96ED9 719 aa18.21■□□□□ 0.51
VPS54-201ENST00000272322 ACBD3Q9H3P7 528 aa18.21■□□□□ 0.51
VPS54-201ENST00000272322 ACP6Q9NPH0 428 aa18.21■□□□□ 0.51
VPS54-201ENST00000272322 ANO9A1A5B4 782 aa18.21■□□□□ 0.51
VPS54-201ENST00000272322 GLYCTKQ8IVS8 523 aa18.21■□□□□ 0.51
VPS54-201ENST00000272322 RUFY1Q96T51 708 aa18.21■□□□□ 0.51
VPS54-201ENST00000272322 CENPFP49454 3210 aa18.21■□□□□ 0.51
VPS54-201ENST00000272322 TMEM110-MUSTN1A8MSY1 372 aa18.21■□□□□ 0.51
VPS54-201ENST00000272322 SLC18A3Q16572 532 aa18.21■□□□□ 0.51
VPS54-201ENST00000272322 ASTE1Q2TB18 679 aaPredicted RBP18.21■□□□□ 0.51
VPS54-201ENST00000272322 SYT2Q8N9I0 419 aaPredicted RBP18.21■□□□□ 0.51
VPS54-201ENST00000272322 FAM107BQ9H098 131 aa18.21■□□□□ 0.51
VPS54-201ENST00000272322 SUGT1Q9Y2Z0 365 aa18.21■□□□□ 0.51
VPS54-201ENST00000272322 TCP1P17987 556 aaKnown RBP18.2■□□□□ 0.5
VPS54-201ENST00000272322 PRAMEF18Q5VWM3 479 aa18.2■□□□□ 0.5
VPS54-201ENST00000272322 CC2D2BQ6DHV5 1058 aa18.2■□□□□ 0.5
VPS54-201ENST00000272322 ZSWIM2Q8NEG5 633 aa18.2■□□□□ 0.5
VPS54-201ENST00000272322 TAF4BQ92750 862 aa18.2■□□□□ 0.5
VPS54-201ENST00000272322 ARL8AQ96BM9 186 aa18.2■□□□□ 0.5
VPS54-201ENST00000272322 GOLGA8IPA6NC78 632 aa18.2■□□□□ 0.5
VPS54-201ENST00000272322 GOLGA8JA6NMD2 632 aa18.2■□□□□ 0.5
VPS54-201ENST00000272322 SLITRK3O94933 977 aa18.2■□□□□ 0.5
VPS54-201ENST00000272322 EPB41P11171 864 aaKnown RBP18.2■□□□□ 0.5
VPS54-201ENST00000272322 DLGAP5Q15398 846 aa18.2■□□□□ 0.5
VPS54-201ENST00000272322 CFAP221Q4G0U5 840 aa18.2■□□□□ 0.5
VPS54-201ENST00000272322 ZNF746Q6NUN9 644 aaPredicted RBP18.2■□□□□ 0.5
VPS54-201ENST00000272322 FAM178BQ8IXR5 827 aa18.2■□□□□ 0.5
VPS54-201ENST00000272322 AFAP1L1Q8TED9 768 aa18.2■□□□□ 0.5
VPS54-201ENST00000272322 ZNF577Q9BSK1 485 aa18.2■□□□□ 0.5
VPS54-201ENST00000272322 OSGEPQ9NPF4 335 aa18.2■□□□□ 0.5
VPS54-201ENST00000272322 PLIN4Q96Q06 1357 aa18.2■□□□□ 0.5
VPS54-201ENST00000272322 ZEB2O60315 1214 aa18.19■□□□□ 0.5
VPS54-201ENST00000272322 HNRNPH3P31942 346 aaKnown RBP18.19■□□□□ 0.5
VPS54-201ENST00000272322 NT5C2P49902 561 aa18.19■□□□□ 0.5
VPS54-201ENST00000272322 IQCEQ6IPM2 695 aa18.19■□□□□ 0.5
VPS54-201ENST00000272322 OGFOD1Q8N543 542 aa18.19■□□□□ 0.5
VPS54-201ENST00000272322 EXOC4Q96A65 974 aa18.19■□□□□ 0.5
VPS54-201ENST00000272322 DDX47Q9H0S4 455 aaKnown RBP18.19■□□□□ 0.5
VPS54-201ENST00000272322 GOLGA6CA6NDK9 693 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms