RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 TAF2Q6P1X5 1199 aa17.15■□□□□ 0.34
LIG1-215ENST00000597901 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.15■□□□□ 0.34
LIG1-215ENST00000597901 RUFY4Q6ZNE9 571 aa17.15■□□□□ 0.34
LIG1-215ENST00000597901 TRIM22Q8IYM9 498 aa17.15■□□□□ 0.34
LIG1-215ENST00000597901 CCDC148Q8NFR7 591 aa17.15■□□□□ 0.34
LIG1-215ENST00000597901 RASGRP4Q8TDF6 673 aa17.15■□□□□ 0.34
LIG1-215ENST00000597901 SEPT8Q92599 483 aa17.15■□□□□ 0.34
LIG1-215ENST00000597901 TNPO1Q92973 898 aaKnown RBP17.15■□□□□ 0.34
LIG1-215ENST00000597901 UIMC1Q96RL1 719 aa17.15■□□□□ 0.34
LIG1-215ENST00000597901 CERS4Q9HA82 394 aa17.15■□□□□ 0.34
LIG1-215ENST00000597901 SCN5AQ14524 2016 aa17.14■□□□□ 0.34
LIG1-215ENST00000597901 IGKV6D-21A0A0A0MT36 114 aa17.14■□□□□ 0.33
LIG1-215ENST00000597901 MBLAC1A4D2B0 266 aaPredicted RBP17.14■□□□□ 0.33
LIG1-215ENST00000597901 DDX39AO00148 427 aaKnown RBP17.14■□□□□ 0.33
LIG1-215ENST00000597901 RFXAPO00287 272 aa17.14■□□□□ 0.33
LIG1-215ENST00000597901 IPO5O00410 1097 aaKnown RBP17.14■□□□□ 0.33
LIG1-215ENST00000597901 ARHGEF15O94989 841 aa17.14■□□□□ 0.33
LIG1-215ENST00000597901 GJB5O95377 273 aa17.14■□□□□ 0.33
LIG1-215ENST00000597901 CHRNA1P02708 482 aa17.14■□□□□ 0.33
LIG1-215ENST00000597901 CENPBP07199 599 aaPredicted RBP17.14■□□□□ 0.33
LIG1-215ENST00000597901 CIITAP33076 1130 aa17.14■□□□□ 0.33
LIG1-215ENST00000597901 IGBP1P78318 339 aa17.14■□□□□ 0.33
LIG1-215ENST00000597901 PLCB4Q15147 1175 aa17.14■□□□□ 0.33
LIG1-215ENST00000597901 ABHD15Q6UXT9 468 aa17.14■□□□□ 0.33
LIG1-215ENST00000597901 PPM1EQ8WY54 764 aa17.14■□□□□ 0.33
LIG1-215ENST00000597901 RAD9AQ99638 391 aa17.14■□□□□ 0.33
LIG1-215ENST00000597901 COL25A1Q9BXS0 654 aaPredicted RBP17.14■□□□□ 0.33
LIG1-215ENST00000597901 EDIL3O43854 480 aa17.13■□□□□ 0.33
LIG1-215ENST00000597901 DEXIO95424 95 aa17.13■□□□□ 0.33
LIG1-215ENST00000597901 MKRN4PQ13434 485 aaPredicted RBP17.13■□□□□ 0.33
LIG1-215ENST00000597901 CPLX2Q6PUV4 134 aaKnown RBP17.13■□□□□ 0.33
LIG1-215ENST00000597901 RSPH3Q86UC2 560 aa17.13■□□□□ 0.33
LIG1-215ENST00000597901 USP38Q8NB14 1042 aa17.13■□□□□ 0.33
LIG1-215ENST00000597901 DNAJB3Q8WWF6 145 aa17.13■□□□□ 0.33
LIG1-215ENST00000597901 SYMPKQ92797 1274 aaKnown RBP17.13■□□□□ 0.33
LIG1-215ENST00000597901 ZNF577Q9BSK1 485 aa17.13■□□□□ 0.33
LIG1-215ENST00000597901 TBC1D22BQ9NU19 505 aa17.13■□□□□ 0.33
LIG1-215ENST00000597901 TUBE1Q9UJT0 475 aa17.13■□□□□ 0.33
LIG1-215ENST00000597901 TRIP12Q14669 1992 aaPredicted RBP17.13■□□□□ 0.33
LIG1-215ENST00000597901 POTEB3A0JP26 581 aa17.12■□□□□ 0.33
LIG1-215ENST00000597901 LCHNA4D1U4 455 aa17.12■□□□□ 0.33
LIG1-215ENST00000597901 AMHP03971 560 aa17.12■□□□□ 0.33
LIG1-215ENST00000597901 SLC26A2P50443 739 aa17.12■□□□□ 0.33
LIG1-215ENST00000597901 USP11P51784 963 aa17.12■□□□□ 0.33
LIG1-215ENST00000597901 ANAPC15P60006 121 aa17.12■□□□□ 0.33
LIG1-215ENST00000597901 CCDC85BQ15834 202 aaPredicted RBP17.12■□□□□ 0.33
LIG1-215ENST00000597901 PRR16Q569H4 304 aa17.12■□□□□ 0.33
LIG1-215ENST00000597901 SWSAP1Q6NVH7 229 aa17.12■□□□□ 0.33
LIG1-215ENST00000597901 FAM117BQ6P1L5 589 aa17.12■□□□□ 0.33
LIG1-215ENST00000597901 POTEBQ6S5H4 581 aa17.12■□□□□ 0.33
LIG1-215ENST00000597901 ARNTL2Q8WYA1 636 aa17.12■□□□□ 0.33
LIG1-215ENST00000597901 ZBTB10Q96DT7 871 aa17.12■□□□□ 0.33
LIG1-215ENST00000597901 PCDHA4Q9UN74 947 aa17.12■□□□□ 0.33
LIG1-215ENST00000597901 TRPC6Q9Y210 931 aa17.12■□□□□ 0.33
LIG1-215ENST00000597901 TET1Q8NFU7 2136 aa17.12■□□□□ 0.33
LIG1-215ENST00000597901 BACH1O14867 736 aa17.11■□□□□ 0.33
LIG1-215ENST00000597901 MGAT3Q09327 533 aa17.11■□□□□ 0.33
LIG1-215ENST00000597901 FAM160B1Q5W0V3 765 aa17.11■□□□□ 0.33
LIG1-215ENST00000597901 MIS18BP1Q6P0N0 1132 aa17.11■□□□□ 0.33
LIG1-215ENST00000597901 TRAPPC12Q8WVT3 735 aa17.11■□□□□ 0.33
LIG1-215ENST00000597901 TPCN1Q9ULQ1 816 aa17.11■□□□□ 0.33
LIG1-215ENST00000597901 PCDHA2Q9Y5H9 948 aa17.11■□□□□ 0.33
LIG1-215ENST00000597901 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.1■□□□□ 0.33
LIG1-215ENST00000597901 EPOPA6NHQ4 379 aa17.1■□□□□ 0.33
LIG1-215ENST00000597901 HBP1O60381 514 aa17.1■□□□□ 0.33
LIG1-215ENST00000597901 PFKFB2O60825 505 aa17.1■□□□□ 0.33
LIG1-215ENST00000597901 POU3F3P20264 500 aaPredicted RBP17.1■□□□□ 0.33
LIG1-215ENST00000597901 SETQ01105 290 aaPredicted RBP17.1■□□□□ 0.33
LIG1-215ENST00000597901 SCRN1Q12765 414 aa17.1■□□□□ 0.33
LIG1-215ENST00000597901 LPIN1Q14693 890 aa17.1■□□□□ 0.33
LIG1-215ENST00000597901 ZNF746Q6NUN9 644 aaPredicted RBP17.1■□□□□ 0.33
LIG1-215ENST00000597901 MYOCDQ8IZQ8 938 aa17.1■□□□□ 0.33
LIG1-215ENST00000597901 APBB2Q92870 758 aa17.1■□□□□ 0.33
LIG1-215ENST00000597901 TOP1MTQ969P6 601 aa17.1■□□□□ 0.33
LIG1-215ENST00000597901 LENG9Q96B70 501 aa17.1■□□□□ 0.33
LIG1-215ENST00000597901 AIFM3Q96NN9 605 aa17.1■□□□□ 0.33
LIG1-215ENST00000597901 IFIH1Q9BYX4 1025 aaKnown RBP17.1■□□□□ 0.33
LIG1-215ENST00000597901 FAM49AQ9H0Q0 323 aaPredicted RBP17.1■□□□□ 0.33
LIG1-215ENST00000597901 SLKQ9H2G2 1235 aaPredicted RBP17.1■□□□□ 0.33
LIG1-215ENST00000597901 ZNF302Q9NR11 478 aa17.1■□□□□ 0.33
LIG1-215ENST00000597901 INSL6Q9Y581 213 aa17.1■□□□□ 0.33
LIG1-215ENST00000597901 RPLP2P05387 115 aaKnown RBP17.09■□□□□ 0.33
LIG1-215ENST00000597901 GHRP10912 638 aa17.09■□□□□ 0.33
LIG1-215ENST00000597901 ATP4AP20648 1035 aa17.09■□□□□ 0.33
LIG1-215ENST00000597901 KLRC1P26715 233 aa17.09■□□□□ 0.33
LIG1-215ENST00000597901 MRPS6P82932 125 aaKnown RBP17.09■□□□□ 0.33
LIG1-215ENST00000597901 IER5Q5VY09 327 aa17.09■□□□□ 0.33
LIG1-215ENST00000597901 GALNT17Q6IS24 598 aa17.09■□□□□ 0.33
LIG1-215ENST00000597901 PDXDC2PQ6P474 469 aa17.09■□□□□ 0.33
LIG1-215ENST00000597901 MTHFD1LQ6UB35 978 aa17.09■□□□□ 0.33
LIG1-215ENST00000597901 SPRED2Q7Z698 418 aa17.09■□□□□ 0.33
LIG1-215ENST00000597901 CCDC60Q8IWA6 550 aaPredicted RBP17.09■□□□□ 0.33
LIG1-215ENST00000597901 BLIDQ8IZY5 108 aa17.09■□□□□ 0.33
LIG1-215ENST00000597901 TBCKQ8TEA7 893 aa17.09■□□□□ 0.33
LIG1-215ENST00000597901 ATP8B4Q8TF62 1192 aa17.09■□□□□ 0.33
LIG1-215ENST00000597901 C22orf23Q9BZE7 217 aa17.09■□□□□ 0.33
LIG1-215ENST00000597901 TSPYL2Q9H2G4 693 aaPredicted RBP17.09■□□□□ 0.33
LIG1-215ENST00000597901 PRDM6Q9NQX0 595 aa17.09■□□□□ 0.33
LIG1-215ENST00000597901 PCDHA10Q9Y5I2 948 aa17.09■□□□□ 0.33
LIG1-215ENST00000597901 MAFBQ9Y5Q3 323 aaPredicted RBP17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms