RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	NEK1	Q96PY6	1258 aa		12.05	□□□□□ -0.48
LSM4-205	ENST00000597776	MXRA8	Q9BRK3	442 aa		12.05	□□□□□ -0.48
LSM4-205	ENST00000597776	FAM49A	Q9H0Q0	323 aa	Predicted RBP	12.05	□□□□□ -0.48
LSM4-205	ENST00000597776	KCNH7	Q9NS40	1196 aa		12.05	□□□□□ -0.48
LSM4-205	ENST00000597776	TMEM260	Q9NX78	707 aa		12.05	□□□□□ -0.48
LSM4-205	ENST00000597776	STXBP3	O00186	592 aa		12.04	□□□□□ -0.48
LSM4-205	ENST00000597776	ZBTB43	O43298	467 aa		12.04	□□□□□ -0.48
LSM4-205	ENST00000597776	AR	P10275	920 aa		12.04	□□□□□ -0.48
LSM4-205	ENST00000597776	INSRR	P14616	1297 aa		12.04	□□□□□ -0.48
LSM4-205	ENST00000597776	CTNNB1	P35222	781 aa		12.04	□□□□□ -0.48
LSM4-205	ENST00000597776	ADCY7	P51828	1080 aa		12.04	□□□□□ -0.48
LSM4-205	ENST00000597776	ACTR2	P61160	394 aa		12.04	□□□□□ -0.48
LSM4-205	ENST00000597776	MRPS6	P82932	125 aa	Known RBP	12.04	□□□□□ -0.48
LSM4-205	ENST00000597776	TMEM62	Q0P6H9	643 aa		12.04	□□□□□ -0.48
LSM4-205	ENST00000597776	LEXM	Q3ZCV2	418 aa		12.04	□□□□□ -0.48
LSM4-205	ENST00000597776	TIGD5	Q53EQ6	642 aa		12.04	□□□□□ -0.48
LSM4-205	ENST00000597776	TCEAL5	Q5H9L2	206 aa		12.04	□□□□□ -0.48
LSM4-205	ENST00000597776	RNF20	Q5VTR2	975 aa		12.04	□□□□□ -0.48
LSM4-205	ENST00000597776	FIBCD1	Q8N539	461 aa		12.04	□□□□□ -0.48
LSM4-205	ENST00000597776	BANK1	Q8NDB2	785 aa		12.04	□□□□□ -0.48
LSM4-205	ENST00000597776	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	12.04	□□□□□ -0.48
LSM4-205	ENST00000597776	LINC01599	Q8WXQ3	324 aa		12.04	□□□□□ -0.48
LSM4-205	ENST00000597776	C1QTNF1	Q9BXJ1	281 aa		12.04	□□□□□ -0.48
LSM4-205	ENST00000597776	AGO3	Q9H9G7	860 aa	Known RBP	12.04	□□□□□ -0.48
LSM4-205	ENST00000597776	RIC8A	Q9NPQ8	531 aa		12.04	□□□□□ -0.48
LSM4-205	ENST00000597776	RBM28	Q9NW13	759 aa	Known RBP	12.04	□□□□□ -0.48
LSM4-205	ENST00000597776	SLC9A2	Q9UBY0	812 aa		12.04	□□□□□ -0.48
LSM4-205	ENST00000597776	TRPC6	Q9Y210	931 aa		12.04	□□□□□ -0.48
LSM4-205	ENST00000597776		V9GY48	417 aa	Predicted RBP	12.04	□□□□□ -0.48
LSM4-205	ENST00000597776	NLRC5	Q86WI3	1866 aa		12.04	□□□□□ -0.48
LSM4-205	ENST00000597776	KLF18	A0A0U1RQI7	1052 aa		12.03	□□□□□ -0.48
LSM4-205	ENST00000597776	GOLGA8A	A7E2F4	631 aa		12.03	□□□□□ -0.48
LSM4-205	ENST00000597776	GOLGA8B	A8MQT2	603 aa		12.03	□□□□□ -0.48
LSM4-205	ENST00000597776		H3BQ06	376 aa	Predicted RBP	12.03	□□□□□ -0.48
LSM4-205	ENST00000597776	ENPP3	O14638	875 aa		12.03	□□□□□ -0.48
LSM4-205	ENST00000597776	MAFG	O15525	162 aa		12.03	□□□□□ -0.48
LSM4-205	ENST00000597776	CSPG5	O95196	566 aa		12.03	□□□□□ -0.48
LSM4-205	ENST00000597776	LINC00271	P0C7V0	271 aa		12.03	□□□□□ -0.48
LSM4-205	ENST00000597776	IL9	P15248	144 aa		12.03	□□□□□ -0.48
LSM4-205	ENST00000597776	CD52	P31358	61 aa		12.03	□□□□□ -0.48
LSM4-205	ENST00000597776	EXOSC10	Q01780	885 aa	Known RBP	12.03	□□□□□ -0.48
LSM4-205	ENST00000597776	ITGB3BP	Q13352	177 aa	Predicted RBP	12.03	□□□□□ -0.48
LSM4-205	ENST00000597776	PLCB4	Q15147	1175 aa		12.03	□□□□□ -0.48
LSM4-205	ENST00000597776	PPP1R18	Q6NYC8	613 aa		12.03	□□□□□ -0.48
LSM4-205	ENST00000597776	TSHZ1	Q6ZSZ6	1077 aa		12.03	□□□□□ -0.48
LSM4-205	ENST00000597776	DHX32	Q7L7V1	743 aa	Known RBP	12.03	□□□□□ -0.48
LSM4-205	ENST00000597776	SDF4	Q9BRK5	362 aa		12.03	□□□□□ -0.48
LSM4-205	ENST00000597776	ANO3	Q9BYT9	981 aa		12.03	□□□□□ -0.48
LSM4-205	ENST00000597776	AZI2	Q9H6S1	392 aa		12.03	□□□□□ -0.48
LSM4-205	ENST00000597776	AGO4	Q9HCK5	861 aa	Known RBP	12.03	□□□□□ -0.48
LSM4-205	ENST00000597776	FAM217B	Q9NTX9	383 aa	Predicted RBP	12.03	□□□□□ -0.48
LSM4-205	ENST00000597776	ADGRA3	Q8IWK6	1321 aa		12.03	□□□□□ -0.48
LSM4-205	ENST00000597776	KAT6A	Q92794	2004 aa		12.03	□□□□□ -0.48
LSM4-205	ENST00000597776	FAM86C2P	A6NEL3	165 aa		12.02	□□□□□ -0.49
LSM4-205	ENST00000597776	SMCO2	A6NFE2	343 aa		12.02	□□□□□ -0.49
LSM4-205	ENST00000597776	RRN3P2	A6NIE6	340 aa		12.02	□□□□□ -0.49
LSM4-205	ENST00000597776	DDX39A	O00148	427 aa	Known RBP	12.02	□□□□□ -0.49
LSM4-205	ENST00000597776	GRM6	O15303	877 aa		12.02	□□□□□ -0.49
LSM4-205	ENST00000597776	CPA1	P15085	419 aa		12.02	□□□□□ -0.49
LSM4-205	ENST00000597776	CDC27	P30260	824 aa		12.02	□□□□□ -0.49
LSM4-205	ENST00000597776	SREBF1	P36956	1147 aa		12.02	□□□□□ -0.49
LSM4-205	ENST00000597776	CEP55	Q53EZ4	464 aa		12.02	□□□□□ -0.49
LSM4-205	ENST00000597776	PTCRA	Q6ISU1	281 aa	Predicted RBP	12.02	□□□□□ -0.49
LSM4-205	ENST00000597776	EP400NL	Q6ZTU2	488 aa		12.02	□□□□□ -0.49
LSM4-205	ENST00000597776	UIMC1	Q96RL1	719 aa		12.02	□□□□□ -0.49
LSM4-205	ENST00000597776	LRFN3	Q9BTN0	628 aa		12.02	□□□□□ -0.49
LSM4-205	ENST00000597776	NSUN3	Q9H649	340 aa	Known RBP	12.02	□□□□□ -0.49
LSM4-205	ENST00000597776	RC3H2	Q9HBD1	1191 aa	Known RBP	12.02	□□□□□ -0.49
LSM4-205	ENST00000597776	BARHL2	Q9NY43	387 aa		12.02	□□□□□ -0.49
LSM4-205	ENST00000597776	NAP1L2	Q9ULW6	460 aa	Predicted RBP	12.02	□□□□□ -0.49
LSM4-205	ENST00000597776	NFASC	O94856	1347 aa		12.02	□□□□□ -0.49
LSM4-205	ENST00000597776	RALGAPA2	Q2PPJ7	1873 aa		12.02	□□□□□ -0.49
LSM4-205	ENST00000597776	POTEB3	A0JP26	581 aa		12.01	□□□□□ -0.49
LSM4-205	ENST00000597776	MEIS1	O00470	390 aa		12.01	□□□□□ -0.49
LSM4-205	ENST00000597776	ADAMTS3	O15072	1205 aa		12.01	□□□□□ -0.49
LSM4-205	ENST00000597776	CCNE2	O96020	404 aa		12.01	□□□□□ -0.49
LSM4-205	ENST00000597776	FOS	P01100	380 aa	Predicted RBP	12.01	□□□□□ -0.49
LSM4-205	ENST00000597776	BMPR1A	P36894	532 aa		12.01	□□□□□ -0.49
LSM4-205	ENST00000597776	CLK2	P49760	499 aa	Known RBP	12.01	□□□□□ -0.49
LSM4-205	ENST00000597776	STAT5B	P51692	787 aa		12.01	□□□□□ -0.49
LSM4-205	ENST00000597776	BTG3	Q14201	252 aa	Predicted RBP	12.01	□□□□□ -0.49
LSM4-205	ENST00000597776	IER5	Q5VY09	327 aa		12.01	□□□□□ -0.49
LSM4-205	ENST00000597776	JAKMIP3	Q5VZ66	844 aa		12.01	□□□□□ -0.49
LSM4-205	ENST00000597776	POTEB	Q6S5H4	581 aa		12.01	□□□□□ -0.49
LSM4-205	ENST00000597776	CENPQ	Q7L2Z9	268 aa	Predicted RBP	12.01	□□□□□ -0.49
LSM4-205	ENST00000597776	RTN4RL1	Q86UN2	441 aa	Predicted RBP	12.01	□□□□□ -0.49
LSM4-205	ENST00000597776	FAM178B	Q8IXR5	827 aa		12.01	□□□□□ -0.49
LSM4-205	ENST00000597776	NEK9	Q8TD19	979 aa		12.01	□□□□□ -0.49
LSM4-205	ENST00000597776	ZNF689	Q96CS4	500 aa	Predicted RBP	12.01	□□□□□ -0.49
LSM4-205	ENST00000597776	PABPC5	Q96DU9	382 aa	Known RBP	12.01	□□□□□ -0.49
LSM4-205	ENST00000597776	C11orf16	Q9NQ32	467 aa		12.01	□□□□□ -0.49
LSM4-205	ENST00000597776	PCDHA2	Q9Y5H9	948 aa		12.01	□□□□□ -0.49
LSM4-205	ENST00000597776	TRPV2	Q9Y5S1	764 aa		12.01	□□□□□ -0.49
LSM4-205	ENST00000597776	ATG2A	Q2TAZ0	1938 aa		12.01	□□□□□ -0.49
LSM4-205	ENST00000597776	GRXCR2	A6NFK2	248 aa		12	□□□□□ -0.49
LSM4-205	ENST00000597776	FAM86B1	E9PN63	330 aa		12	□□□□□ -0.49
LSM4-205	ENST00000597776	C5orf67	F2Z3F1	127 aa		12	□□□□□ -0.49
LSM4-205	ENST00000597776		M0QZ92	97 aa		12	□□□□□ -0.49
LSM4-205	ENST00000597776	CDC45	O75419	566 aa		12	□□□□□ -0.49
LSM4-205	ENST00000597776	DGKI	O75912	1065 aa		12	□□□□□ -0.49

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