RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 MAPKAPK5Q8IW41 473 aa11.92□□□□□ -0.5
VPS4B-206ENST00000591475 SUGP1Q8IWZ8 645 aaKnown RBP11.92□□□□□ -0.5
VPS4B-206ENST00000591475 IQCKQ8N0W5 287 aa11.92□□□□□ -0.5
VPS4B-206ENST00000591475 MREGQ8N565 214 aa11.92□□□□□ -0.5
VPS4B-206ENST00000591475 NEDD1Q8NHV4 660 aa11.92□□□□□ -0.5
VPS4B-206ENST00000591475 SNX29Q8TEQ0 813 aa11.92□□□□□ -0.5
VPS4B-206ENST00000591475 DDX12PQ92771 950 aa11.92□□□□□ -0.5
VPS4B-206ENST00000591475 EPB41L5Q9HCM4 733 aa11.92□□□□□ -0.5
VPS4B-206ENST00000591475 NLRC4Q9NPP4 1024 aa11.92□□□□□ -0.5
VPS4B-206ENST00000591475 USP40Q9NVE5 1235 aa11.92□□□□□ -0.5
VPS4B-206ENST00000591475 NFU1Q9UMS0 254 aa11.92□□□□□ -0.5
VPS4B-206ENST00000591475 ATXN2Q99700 1313 aaKnown RBP11.92□□□□□ -0.5
VPS4B-206ENST00000591475 PSME4Q14997 1843 aa11.92□□□□□ -0.5
VPS4B-206ENST00000591475 NDUFAB1O14561 156 aa11.91□□□□□ -0.5
VPS4B-206ENST00000591475 PALMO75781 387 aa11.91□□□□□ -0.5
VPS4B-206ENST00000591475 YBX3P16989 372 aaKnown RBP eCLIP11.91□□□□□ -0.5
VPS4B-206ENST00000591475 CDK8P49336 464 aa11.91□□□□□ -0.5
VPS4B-206ENST00000591475 LIG3P49916 1009 aa11.91□□□□□ -0.5
VPS4B-206ENST00000591475 GUCY2DQ02846 1103 aa11.91□□□□□ -0.5
VPS4B-206ENST00000591475 PDCLQ13371 301 aa11.91□□□□□ -0.5
VPS4B-206ENST00000591475 LRRC41Q15345 812 aa11.91□□□□□ -0.5
VPS4B-206ENST00000591475 TMEM119Q4V9L6 283 aa11.91□□□□□ -0.5
VPS4B-206ENST00000591475 FAM83BQ5T0W9 1011 aa11.91□□□□□ -0.5
VPS4B-206ENST00000591475 CDC42EP5Q6NZY7 148 aa11.91□□□□□ -0.5
VPS4B-206ENST00000591475 C16orf86Q6ZW13 317 aa11.91□□□□□ -0.5
VPS4B-206ENST00000591475 CD302Q8IX05 232 aa11.91□□□□□ -0.5
VPS4B-206ENST00000591475 IFT81Q8WYA0 676 aa11.91□□□□□ -0.5
VPS4B-206ENST00000591475 LSM14BQ9BX40 385 aaKnown RBP11.91□□□□□ -0.5
VPS4B-206ENST00000591475 RABEP2Q9H5N1 569 aa11.91□□□□□ -0.5
VPS4B-206ENST00000591475 POTEMA6NI47 508 aa11.91□□□□□ -0.5
VPS4B-206ENST00000591475 TRAF5O00463 557 aa11.91□□□□□ -0.5
VPS4B-206ENST00000591475 SLC37A4O43826 429 aa11.91□□□□□ -0.5
VPS4B-206ENST00000591475 NOL4O94818 638 aa11.91□□□□□ -0.5
VPS4B-206ENST00000591475 GNA14O95837 355 aa11.91□□□□□ -0.5
VPS4B-206ENST00000591475 INPP5BP32019 993 aa11.91□□□□□ -0.5
VPS4B-206ENST00000591475 ADCY7P51828 1080 aa11.91□□□□□ -0.5
VPS4B-206ENST00000591475 ZCWPW2Q504Y3 356 aa11.91□□□□□ -0.5
VPS4B-206ENST00000591475 MEI1Q5TIA1 1274 aa11.91□□□□□ -0.5
VPS4B-206ENST00000591475 WHAMMQ8TF30 809 aa11.91□□□□□ -0.5
VPS4B-206ENST00000591475 CEP63Q96MT8 703 aa11.91□□□□□ -0.5
VPS4B-206ENST00000591475 ZEB2O60315 1214 aa11.9□□□□□ -0.5
VPS4B-206ENST00000591475 TLR2O60603 784 aa11.9□□□□□ -0.5
VPS4B-206ENST00000591475 TDP2O95551 362 aa11.9□□□□□ -0.5
VPS4B-206ENST00000591475 FTCDO95954 541 aa11.9□□□□□ -0.5
VPS4B-206ENST00000591475 KRT14P02533 472 aa11.9□□□□□ -0.5
VPS4B-206ENST00000591475 FAM153BP0C7A2 387 aa11.9□□□□□ -0.5
VPS4B-206ENST00000591475 ERCC3P19447 782 aa11.9□□□□□ -0.5
VPS4B-206ENST00000591475 ATP1A2P50993 1020 aa11.9□□□□□ -0.5
VPS4B-206ENST00000591475 POLR2FP61218 127 aaKnown RBP11.9□□□□□ -0.5
VPS4B-206ENST00000591475 TNNC1P63316 161 aa11.9□□□□□ -0.5
VPS4B-206ENST00000591475 COASYQ13057 564 aa11.9□□□□□ -0.5
VPS4B-206ENST00000591475 DLGAP5Q15398 846 aa11.9□□□□□ -0.5
VPS4B-206ENST00000591475 SLC18A3Q16572 532 aa11.9□□□□□ -0.5
VPS4B-206ENST00000591475 FAM153CQ494X1 144 aa11.9□□□□□ -0.5
VPS4B-206ENST00000591475 EMC10Q5UCC4 262 aa11.9□□□□□ -0.5
VPS4B-206ENST00000591475 KCTD16Q68DU8 428 aa11.9□□□□□ -0.5
VPS4B-206ENST00000591475 SH2D3CQ8N5H7 860 aa11.9□□□□□ -0.5
VPS4B-206ENST00000591475 C1orf131Q8NDD1 294 aaKnown RBP11.9□□□□□ -0.5
VPS4B-206ENST00000591475 GLIS3Q8NEA6 775 aa11.9□□□□□ -0.5
VPS4B-206ENST00000591475 KRT12Q99456 494 aa11.9□□□□□ -0.5
VPS4B-206ENST00000591475 RIOX1Q9H6W3 641 aa11.9□□□□□ -0.5
VPS4B-206ENST00000591475 FAM153AQ9UHL3 310 aa11.9□□□□□ -0.5
VPS4B-206ENST00000591475 SAMM50Q9Y512 469 aa11.9□□□□□ -0.5
VPS4B-206ENST00000591475 PCDHGC5Q9Y5F6 944 aa11.9□□□□□ -0.5
VPS4B-206ENST00000591475 SPDYE2BA6NHP3 402 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 ZNF233A6NK53 670 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 KIAA0754O94854 1291 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 SPDYE6P0CI01 402 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 GUCY2CP25092 1073 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 KLRC1P26715 233 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 DNA2P51530 1060 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 CDC37Q16543 378 aaPredicted RBP11.89□□□□□ -0.51
VPS4B-206ENST00000591475 FAM26FQ5R3K3 315 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 MICALCLQ6ZW33 695 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 KCNK18Q7Z418 384 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 MTMR14Q8NCE2 650 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 CASKIN2Q8WXE0 1202 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.89□□□□□ -0.51
VPS4B-206ENST00000591475 TBC1D5Q92609 795 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 CEP95Q96GE4 821 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 INPP4AQ96PE3 977 aaPredicted RBP11.89□□□□□ -0.51
VPS4B-206ENST00000591475 NUDT12Q9BQG2 462 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 BMP2KQ9NSY1 1161 aaPredicted RBP11.89□□□□□ -0.51
VPS4B-206ENST00000591475 PANK4Q9NVE7 773 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 ESYT3A0FGR9 886 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 ZSCAN5CA6NGD5 496 aaPredicted RBP11.89□□□□□ -0.51
VPS4B-206ENST00000591475 USP17L5A8MUK1 530 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 HMGB1P1B2RPK0 211 aaPredicted RBP11.89□□□□□ -0.51
VPS4B-206ENST00000591475 CES2O00748 559 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 NR1D1P20393 614 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 GUCY2FP51841 1108 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 PICALMQ13492 652 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 RAPGEF1Q13905 1077 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 ASIC2Q16515 512 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 KIAA0753Q2KHM9 967 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 PIK3R5Q8WYR1 880 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 TAF4BQ92750 862 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 DNAJC19Q96DA6 116 aa11.89□□□□□ -0.51
VPS4B-206ENST00000591475 PRMT6Q96LA8 375 aaPredicted RBP11.89□□□□□ -0.51
VPS4B-206ENST00000591475 RNPC3Q96LT9 517 aaKnown RBP11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms