RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 DKC1O60832 514 aaKnown RBP eCLIP15.27■□□□□ 0.04
CCDC40-209ENST00000573474 ECM2O94769 699 aaPredicted RBP15.27■□□□□ 0.04
CCDC40-209ENST00000573474 FARP2O94887 1054 aaPredicted RBP15.27■□□□□ 0.04
CCDC40-209ENST00000573474 ATG7O95352 703 aa15.27■□□□□ 0.04
CCDC40-209ENST00000573474 GGPS1O95749 300 aa15.27■□□□□ 0.04
CCDC40-209ENST00000573474 TBC1D8O95759 1140 aa15.27■□□□□ 0.04
CCDC40-209ENST00000573474 SNAI1O95863 264 aaPredicted RBP15.27■□□□□ 0.04
CCDC40-209ENST00000573474 XRCC6P12956 609 aaKnown RBP eCLIP15.27■□□□□ 0.04
CCDC40-209ENST00000573474 ASIC1P78348 528 aa15.27■□□□□ 0.04
CCDC40-209ENST00000573474 LACTBP83111 547 aaPredicted RBP15.27■□□□□ 0.04
CCDC40-209ENST00000573474 KCNB1Q14721 858 aa15.27■□□□□ 0.04
CCDC40-209ENST00000573474 LY6KQ17RY6 165 aa15.27■□□□□ 0.04
CCDC40-209ENST00000573474 CELF3Q5SZQ8 465 aaKnown RBP15.27■□□□□ 0.04
CCDC40-209ENST00000573474 ISM2Q6H9L7 571 aa15.27■□□□□ 0.04
CCDC40-209ENST00000573474 TAPT1Q6NXT6 567 aa15.27■□□□□ 0.04
CCDC40-209ENST00000573474 METTL7BQ6UX53 244 aa15.27■□□□□ 0.04
CCDC40-209ENST00000573474 GPBP1Q86WP2 473 aa15.27■□□□□ 0.04
CCDC40-209ENST00000573474 GTPBP4Q9BZE4 634 aaKnown RBP15.27■□□□□ 0.04
CCDC40-209ENST00000573474 ABHD16BQ9H3Z7 469 aa15.27■□□□□ 0.04
CCDC40-209ENST00000573474 MLXIPQ9HAP2 919 aa15.27■□□□□ 0.04
CCDC40-209ENST00000573474 RNF186Q9NXI6 227 aa15.27■□□□□ 0.04
CCDC40-209ENST00000573474 WRAP73Q9P2S5 460 aaPredicted RBP15.27■□□□□ 0.04
CCDC40-209ENST00000573474 KIAA1217Q5T5P2 1943 aa15.26■□□□□ 0.03
CCDC40-209ENST00000573474 PVALEFA0A1B0GWK0 134 aa15.26■□□□□ 0.03
CCDC40-209ENST00000573474 KLRC4O43908 158 aa15.26■□□□□ 0.03
CCDC40-209ENST00000573474 SORBS3O60504 671 aa15.26■□□□□ 0.03
CCDC40-209ENST00000573474 ARIH2O95376 493 aa15.26■□□□□ 0.03
CCDC40-209ENST00000573474 SUPT20HL2P0C7V6 817 aa15.26■□□□□ 0.03
CCDC40-209ENST00000573474 TXNP10599 105 aaKnown RBP15.26■□□□□ 0.03
CCDC40-209ENST00000573474 PSMC4P43686 418 aa15.26■□□□□ 0.03
CCDC40-209ENST00000573474 MRE11P49959 708 aa15.26■□□□□ 0.03
CCDC40-209ENST00000573474 SP3Q02447 781 aa15.26■□□□□ 0.03
CCDC40-209ENST00000573474 IRF5Q13568 498 aa15.26■□□□□ 0.03
CCDC40-209ENST00000573474 KIF22Q14807 665 aa15.26■□□□□ 0.03
CCDC40-209ENST00000573474 DPCR1Q3MIW9 517 aa15.26■□□□□ 0.03
CCDC40-209ENST00000573474 OLFML2BQ68BL8 750 aa15.26■□□□□ 0.03
CCDC40-209ENST00000573474 DHX37Q8IY37 1157 aaKnown RBP15.26■□□□□ 0.03
CCDC40-209ENST00000573474 C4orf19Q8IY42 314 aa15.26■□□□□ 0.03
CCDC40-209ENST00000573474 MLKLQ8NB16 471 aa15.26■□□□□ 0.03
CCDC40-209ENST00000573474 FAM200AQ8TCP9 573 aa15.26■□□□□ 0.03
CCDC40-209ENST00000573474 PIGOQ8TEQ8 1089 aa15.26■□□□□ 0.03
CCDC40-209ENST00000573474 DDX12PQ92771 950 aa15.26■□□□□ 0.03
CCDC40-209ENST00000573474 ATP6V0A1Q93050 837 aa15.26■□□□□ 0.03
CCDC40-209ENST00000573474 APBA2Q99767 749 aa15.26■□□□□ 0.03
CCDC40-209ENST00000573474 KATNBL1Q9H079 304 aa15.26■□□□□ 0.03
CCDC40-209ENST00000573474 BHMT2Q9H2M3 363 aa15.26■□□□□ 0.03
CCDC40-209ENST00000573474 GRPEL1Q9HAV7 217 aa15.26■□□□□ 0.03
CCDC40-209ENST00000573474 PDGFCQ9NRA1 345 aa15.26■□□□□ 0.03
CCDC40-209ENST00000573474 DBR1Q9UK59 544 aaKnown RBP15.26■□□□□ 0.03
CCDC40-209ENST00000573474 PLXNA1Q9UIW2 1896 aa15.26■□□□□ 0.03
CCDC40-209ENST00000573474 TRPA1O75762 1119 aa15.25■□□□□ 0.03
CCDC40-209ENST00000573474 RHOBTB3O94955 611 aa15.25■□□□□ 0.03
CCDC40-209ENST00000573474 CYP11B2P19099 503 aa15.25■□□□□ 0.03
CCDC40-209ENST00000573474 CYP2B6P20813 491 aa15.25■□□□□ 0.03
CCDC40-209ENST00000573474 BMP6P22004 513 aa15.25■□□□□ 0.03
CCDC40-209ENST00000573474 CTGFP29279 349 aa15.25■□□□□ 0.03
CCDC40-209ENST00000573474 ZNF165P49910 485 aa15.25■□□□□ 0.03
CCDC40-209ENST00000573474 HTRA3P83110 453 aa15.25■□□□□ 0.03
CCDC40-209ENST00000573474 SP4Q02446 784 aa15.25■□□□□ 0.03
CCDC40-209ENST00000573474 ACVR2BQ13705 512 aa15.25■□□□□ 0.03
CCDC40-209ENST00000573474 KMT5BQ4FZB7 885 aa15.25■□□□□ 0.03
CCDC40-209ENST00000573474 ARSHQ5FYA8 562 aa15.25■□□□□ 0.03
CCDC40-209ENST00000573474 CT47A1Q5JQC4 288 aaPredicted RBP15.25■□□□□ 0.03
CCDC40-209ENST00000573474 L1TD1Q5T7N2 865 aaKnown RBP15.25■□□□□ 0.03
CCDC40-209ENST00000573474 SWSAP1Q6NVH7 229 aa15.25■□□□□ 0.03
CCDC40-209ENST00000573474 C11orf57Q6ZUT1 292 aaPredicted RBP15.25■□□□□ 0.03
CCDC40-209ENST00000573474 UNC13DQ70J99 1090 aa15.25■□□□□ 0.03
CCDC40-209ENST00000573474 DYMQ7RTS9 669 aa15.25■□□□□ 0.03
CCDC40-209ENST00000573474 RNF214Q8ND24 703 aa15.25■□□□□ 0.03
CCDC40-209ENST00000573474 SEPT1Q8WYJ6 367 aa15.25■□□□□ 0.03
CCDC40-209ENST00000573474 DNAJC19Q96DA6 116 aa15.25■□□□□ 0.03
CCDC40-209ENST00000573474 TRIM47Q96LD4 638 aa15.25■□□□□ 0.03
CCDC40-209ENST00000573474 EXOC1Q9NV70 894 aa15.25■□□□□ 0.03
CCDC40-209ENST00000573474 GABBR1Q9UBS5 961 aa15.25■□□□□ 0.03
CCDC40-209ENST00000573474 DACH1Q9UI36 760 aa15.25■□□□□ 0.03
CCDC40-209ENST00000573474 GSTTP1A0A1W2PQM5 241 aa15.24■□□□□ 0.03
CCDC40-209ENST00000573474 ARHGEF35A5YM69 484 aa15.24■□□□□ 0.03
CCDC40-209ENST00000573474 BACH1O14867 736 aa15.24■□□□□ 0.03
CCDC40-209ENST00000573474 ZBTB39O15060 712 aa15.24■□□□□ 0.03
CCDC40-209ENST00000573474 KRT18P05783 430 aaKnown RBP15.24■□□□□ 0.03
CCDC40-209ENST00000573474 LAMC2Q13753 1193 aa15.24■□□□□ 0.03
CCDC40-209ENST00000573474 UGCGQ16739 394 aa15.24■□□□□ 0.03
CCDC40-209ENST00000573474 UVSSAQ2YD98 709 aa15.24■□□□□ 0.03
CCDC40-209ENST00000573474 ZNF658Q5TYW1 1059 aaPredicted RBP15.24■□□□□ 0.03
CCDC40-209ENST00000573474 IQSEC1Q6DN90 963 aa15.24■□□□□ 0.03
CCDC40-209ENST00000573474 BPIFA3Q9BQP9 254 aa15.24■□□□□ 0.03
CCDC40-209ENST00000573474 CBX8Q9HC52 389 aa15.24■□□□□ 0.03
CCDC40-209ENST00000573474 ANKEF1Q9NU02 776 aa15.24■□□□□ 0.03
CCDC40-209ENST00000573474 FLRT1Q9NZU1 646 aa15.24■□□□□ 0.03
CCDC40-209ENST00000573474 KCND2Q9NZV8 630 aa15.24■□□□□ 0.03
CCDC40-209ENST00000573474 TELO2Q9Y4R8 837 aa15.24■□□□□ 0.03
CCDC40-209ENST00000573474 IGKV6D-21A0A0A0MT36 114 aa15.23■□□□□ 0.03
CCDC40-209ENST00000573474 NKRFO15226 690 aaKnown RBP eCLIP15.23■□□□□ 0.03
CCDC40-209ENST00000573474 GH1P01241 217 aa15.23■□□□□ 0.03
CCDC40-209ENST00000573474 XRCC5P13010 732 aaKnown RBP15.23■□□□□ 0.03
CCDC40-209ENST00000573474 YWHABP31946 246 aaKnown RBP15.23■□□□□ 0.03
CCDC40-209ENST00000573474 FAM160B1Q5W0V3 765 aa15.23■□□□□ 0.03
CCDC40-209ENST00000573474 RINT1Q6NUQ1 792 aa15.23■□□□□ 0.03
CCDC40-209ENST00000573474 C1orf186Q6ZWK4 172 aa15.23■□□□□ 0.03
CCDC40-209ENST00000573474 OTUD6AQ7L8S5 288 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms