RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 CERS4Q9HA82 394 aa23.59■■□□□ 1.37
CLN3-219ENST00000565778 RRN3P2A6NIE6 340 aa23.58■■□□□ 1.37
CLN3-219ENST00000565778 INSRRP14616 1297 aa23.58■■□□□ 1.37
CLN3-219ENST00000565778 PLEKHG4Q58EX7 1191 aa23.58■■□□□ 1.37
CLN3-219ENST00000565778 RUFY4Q6ZNE9 571 aa23.58■■□□□ 1.37
CLN3-219ENST00000565778 PLPPR4Q7Z2D5 763 aa23.58■■□□□ 1.37
CLN3-219ENST00000565778 RSPH3Q86UC2 560 aa23.58■■□□□ 1.37
CLN3-219ENST00000565778 RASGRP4Q8TDF6 673 aa23.58■■□□□ 1.37
CLN3-219ENST00000565778 CRYGNQ8WXF5 182 aa23.58■■□□□ 1.37
CLN3-219ENST00000565778 SH3GLB2Q9NR46 395 aa23.58■■□□□ 1.37
CLN3-219ENST00000565778 TUBE1Q9UJT0 475 aa23.58■■□□□ 1.37
CLN3-219ENST00000565778 TRPC6Q9Y210 931 aa23.58■■□□□ 1.37
CLN3-219ENST00000565778 ATG7O95352 703 aa23.57■■□□□ 1.36
CLN3-219ENST00000565778 CCDC85BQ15834 202 aaPredicted RBP23.57■■□□□ 1.36
CLN3-219ENST00000565778 FAM26DQ5JW98 314 aa23.57■■□□□ 1.36
CLN3-219ENST00000565778 FAM117BQ6P1L5 589 aa23.57■■□□□ 1.36
CLN3-219ENST00000565778 TAF2Q6P1X5 1199 aa23.57■■□□□ 1.36
CLN3-219ENST00000565778 LIN28BQ6ZN17 250 aaKnown RBP eCLIP23.57■■□□□ 1.36
CLN3-219ENST00000565778 ZNF577Q9BSK1 485 aa23.57■■□□□ 1.36
CLN3-219ENST00000565778 IGLV3-22A0A075B6J6 115 aa23.56■■□□□ 1.36
CLN3-219ENST00000565778 IPO5O00410 1097 aaKnown RBP23.56■■□□□ 1.36
CLN3-219ENST00000565778 BACH1O14867 736 aa23.56■■□□□ 1.36
CLN3-219ENST00000565778 AMHP03971 560 aa23.56■■□□□ 1.36
CLN3-219ENST00000565778 TAP1Q03518 808 aa23.56■■□□□ 1.36
CLN3-219ENST00000565778 MARCH8Q5T0T0 291 aa23.56■■□□□ 1.36
CLN3-219ENST00000565778 RPAINQ86UA6 219 aa23.56■■□□□ 1.36
CLN3-219ENST00000565778 DNAJB3Q8WWF6 145 aa23.56■■□□□ 1.36
CLN3-219ENST00000565778 RAD9AQ99638 391 aa23.56■■□□□ 1.36
CLN3-219ENST00000565778 OSBPL7Q9BZF2 842 aa23.56■■□□□ 1.36
CLN3-219ENST00000565778 GBF1Q92538 1859 aa23.56■■□□□ 1.36
CLN3-219ENST00000565778 CDH23Q9H251 3354 aa23.55■■□□□ 1.36
CLN3-219ENST00000565778 RFXAPO00287 272 aa23.55■■□□□ 1.36
CLN3-219ENST00000565778 GJB5O95377 273 aa23.55■■□□□ 1.36
CLN3-219ENST00000565778 DEXIO95424 95 aa23.55■■□□□ 1.36
CLN3-219ENST00000565778 CHRNA1P02708 482 aa23.55■■□□□ 1.36
CLN3-219ENST00000565778 PLCB4Q15147 1175 aa23.55■■□□□ 1.36
CLN3-219ENST00000565778 PRR16Q569H4 304 aa23.55■■□□□ 1.36
CLN3-219ENST00000565778 ABHD15Q6UXT9 468 aa23.55■■□□□ 1.36
CLN3-219ENST00000565778 USP38Q8NB14 1042 aa23.55■■□□□ 1.36
CLN3-219ENST00000565778 ARNTL2Q8WYA1 636 aa23.55■■□□□ 1.36
CLN3-219ENST00000565778 TBC1D22BQ9NU19 505 aa23.55■■□□□ 1.36
CLN3-219ENST00000565778 POTEB3A0JP26 581 aa23.54■■□□□ 1.36
CLN3-219ENST00000565778 MBLAC1A4D2B0 266 aaPredicted RBP23.54■■□□□ 1.36
CLN3-219ENST00000565778 DHX15O43143 795 aaKnown RBP23.54■■□□□ 1.36
CLN3-219ENST00000565778 ARHGEF15O94989 841 aa23.54■■□□□ 1.36
CLN3-219ENST00000565778 CCNE2O96020 404 aa23.54■■□□□ 1.36
CLN3-219ENST00000565778 SETQ01105 290 aaPredicted RBP23.54■■□□□ 1.36
CLN3-219ENST00000565778 FAM160B1Q5W0V3 765 aa23.54■■□□□ 1.36
CLN3-219ENST00000565778 MIS18BP1Q6P0N0 1132 aa23.54■■□□□ 1.36
CLN3-219ENST00000565778 POTEBQ6S5H4 581 aa23.54■■□□□ 1.36
CLN3-219ENST00000565778 MYOCDQ8IZQ8 938 aa23.54■■□□□ 1.36
CLN3-219ENST00000565778 ZBTB10Q96DT7 871 aa23.54■■□□□ 1.36
CLN3-219ENST00000565778 CHD9Q3L8U1 2897 aa23.53■■□□□ 1.36
CLN3-219ENST00000565778 LCHNA4D1U4 455 aa23.53■■□□□ 1.36
CLN3-219ENST00000565778 CIITAP33076 1130 aa23.53■■□□□ 1.36
CLN3-219ENST00000565778 SLC26A2P50443 739 aa23.53■■□□□ 1.36
CLN3-219ENST00000565778 ANAPC15P60006 121 aa23.53■■□□□ 1.36
CLN3-219ENST00000565778 SWSAP1Q6NVH7 229 aa23.53■■□□□ 1.36
CLN3-219ENST00000565778 IFIH1Q9BYX4 1025 aaKnown RBP23.53■■□□□ 1.36
CLN3-219ENST00000565778 FAM49AQ9H0Q0 323 aaPredicted RBP23.53■■□□□ 1.36
CLN3-219ENST00000565778 SLKQ9H2G2 1235 aaPredicted RBP23.53■■□□□ 1.36
CLN3-219ENST00000565778 TCEAL9Q9UHQ7 104 aa23.53■■□□□ 1.36
CLN3-219ENST00000565778 A0A0C4DFX4 3053 aa23.52■■□□□ 1.36
CLN3-219ENST00000565778 IGKV6D-21A0A0A0MT36 114 aa23.52■■□□□ 1.36
CLN3-219ENST00000565778 GHRP10912 638 aa23.52■■□□□ 1.36
CLN3-219ENST00000565778 USP11P51784 963 aa23.52■■□□□ 1.36
CLN3-219ENST00000565778 PDXDC2PQ6P474 469 aa23.52■■□□□ 1.36
CLN3-219ENST00000565778 TRAPPC12Q8WVT3 735 aa23.52■■□□□ 1.36
CLN3-219ENST00000565778 APBB2Q92870 758 aa23.52■■□□□ 1.36
CLN3-219ENST00000565778 ZNF302Q9NR11 478 aa23.52■■□□□ 1.36
CLN3-219ENST00000565778 PCDHA4Q9UN74 947 aa23.52■■□□□ 1.36
CLN3-219ENST00000565778 INSL6Q9Y581 213 aa23.52■■□□□ 1.36
CLN3-219ENST00000565778 KAT6AQ92794 2004 aa23.51■■□□□ 1.35
CLN3-219ENST00000565778 HBP1O60381 514 aa23.51■■□□□ 1.35
CLN3-219ENST00000565778 EIF5BO60841 1220 aaKnown RBP23.51■■□□□ 1.35
CLN3-219ENST00000565778 UPP2O95045 317 aa23.51■■□□□ 1.35
CLN3-219ENST00000565778 RPLP2P05387 115 aaKnown RBP23.51■■□□□ 1.35
CLN3-219ENST00000565778 IER5Q5VY09 327 aa23.51■■□□□ 1.35
CLN3-219ENST00000565778 CKAP2LQ8IYA6 745 aa23.51■■□□□ 1.35
CLN3-219ENST00000565778 BLIDQ8IZY5 108 aa23.51■■□□□ 1.35
CLN3-219ENST00000565778 MICALL1Q8N3F8 863 aa23.51■■□□□ 1.35
CLN3-219ENST00000565778 AIFM3Q96NN9 605 aa23.51■■□□□ 1.35
CLN3-219ENST00000565778 C22orf23Q9BZE7 217 aa23.51■■□□□ 1.35
CLN3-219ENST00000565778 PCDHA2Q9Y5H9 948 aa23.51■■□□□ 1.35
CLN3-219ENST00000565778 CDY2AQ9Y6F7 541 aa23.51■■□□□ 1.35
CLN3-219ENST00000565778 EYSQ5T1H1 3165 aa23.51■■□□□ 1.35
CLN3-219ENST00000565778 MYO9BQ13459 2157 aa23.51■■□□□ 1.35
CLN3-219ENST00000565778 GTPBP6O43824 516 aaPredicted RBP23.5■■□□□ 1.35
CLN3-219ENST00000565778 CDKL5O76039 1030 aa23.5■■□□□ 1.35
CLN3-219ENST00000565778 MGAT3Q09327 533 aa23.5■■□□□ 1.35
CLN3-219ENST00000565778 SCRN1Q12765 414 aa23.5■■□□□ 1.35
CLN3-219ENST00000565778 ANKRD1Q15327 319 aa23.5■■□□□ 1.35
CLN3-219ENST00000565778 ZNF746Q6NUN9 644 aaPredicted RBP23.5■■□□□ 1.35
CLN3-219ENST00000565778 CCDC60Q8IWA6 550 aaPredicted RBP23.5■■□□□ 1.35
CLN3-219ENST00000565778 TBCKQ8TEA7 893 aa23.5■■□□□ 1.35
CLN3-219ENST00000565778 PRDM6Q9NQX0 595 aa23.5■■□□□ 1.35
CLN3-219ENST00000565778 TPCN1Q9ULQ1 816 aa23.5■■□□□ 1.35
CLN3-219ENST00000565778 SAMM50Q9Y512 469 aa23.5■■□□□ 1.35
CLN3-219ENST00000565778 EPOPA6NHQ4 379 aa23.49■■□□□ 1.35
CLN3-219ENST00000565778 M0QZ92 97 aa23.49■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms