RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 RRN3P2A6NIE6 340 aa19.57■□□□□ 0.72
CLN3-216ENST00000565316 H3BNC9 293 aa19.57■□□□□ 0.72
CLN3-216ENST00000565316 STXBP3O00186 592 aa19.57■□□□□ 0.72
CLN3-216ENST00000565316 UPP2O95045 317 aa19.57■□□□□ 0.72
CLN3-216ENST00000565316 RPLP2P05387 115 aaKnown RBP19.57■□□□□ 0.72
CLN3-216ENST00000565316 GHRP10912 638 aa19.57■□□□□ 0.72
CLN3-216ENST00000565316 KRT32Q14532 448 aa19.57■□□□□ 0.72
CLN3-216ENST00000565316 CEP55Q53EZ4 464 aa19.57■□□□□ 0.72
CLN3-216ENST00000565316 MRPL38Q96DV4 380 aaKnown RBP19.57■□□□□ 0.72
CLN3-216ENST00000565316 BARHL2Q9NY43 387 aa19.57■□□□□ 0.72
CLN3-216ENST00000565316 KAT6AQ92794 2004 aa19.56■□□□□ 0.72
CLN3-216ENST00000565316 MEIS1O00470 390 aa19.56■□□□□ 0.72
CLN3-216ENST00000565316 ARP10275 920 aa19.56■□□□□ 0.72
CLN3-216ENST00000565316 INSRRP14616 1297 aa19.56■□□□□ 0.72
CLN3-216ENST00000565316 CLK2P49760 499 aaKnown RBP19.56■□□□□ 0.72
CLN3-216ENST00000565316 ADCY7P51828 1080 aa19.56■□□□□ 0.72
CLN3-216ENST00000565316 FBXO47Q5MNV8 452 aa19.56■□□□□ 0.72
CLN3-216ENST00000565316 PLPPR4Q7Z2D5 763 aa19.56■□□□□ 0.72
CLN3-216ENST00000565316 TMEM192Q8IY95 271 aa19.56■□□□□ 0.72
CLN3-216ENST00000565316 DNAJB3Q8WWF6 145 aa19.56■□□□□ 0.72
CLN3-216ENST00000565316 KCNB2Q92953 911 aa19.56■□□□□ 0.72
CLN3-216ENST00000565316 IL17RAQ96F46 866 aa19.56■□□□□ 0.72
CLN3-216ENST00000565316 ANO3Q9BYT9 981 aa19.56■□□□□ 0.72
CLN3-216ENST00000565316 GLT8D2Q9H1C3 349 aa19.56■□□□□ 0.72
CLN3-216ENST00000565316 UBE2ZQ9H832 354 aaPredicted RBP19.56■□□□□ 0.72
CLN3-216ENST00000565316 AGO4Q9HCK5 861 aaKnown RBP19.56■□□□□ 0.72
CLN3-216ENST00000565316 SMCO2A6NFE2 343 aa19.55■□□□□ 0.72
CLN3-216ENST00000565316 ENPP3O14638 875 aa19.55■□□□□ 0.72
CLN3-216ENST00000565316 CDC45O75419 566 aa19.55■□□□□ 0.72
CLN3-216ENST00000565316 ATG7O95352 703 aa19.55■□□□□ 0.72
CLN3-216ENST00000565316 COL9A1P20849 921 aa19.55■□□□□ 0.72
CLN3-216ENST00000565316 CDC27P30260 824 aa19.55■□□□□ 0.72
CLN3-216ENST00000565316 SREBF1P36956 1147 aa19.55■□□□□ 0.72
CLN3-216ENST00000565316 ACTR2P61160 394 aa19.55■□□□□ 0.72
CLN3-216ENST00000565316 MRPS6P82932 125 aaKnown RBP19.55■□□□□ 0.72
CLN3-216ENST00000565316 ITGB3BPQ13352 177 aaPredicted RBP19.55■□□□□ 0.72
CLN3-216ENST00000565316 AP3B2Q13367 1082 aa19.55■□□□□ 0.72
CLN3-216ENST00000565316 PTPROQ16827 1216 aa19.55■□□□□ 0.72
CLN3-216ENST00000565316 PGBD1Q96JS3 809 aa19.55■□□□□ 0.72
CLN3-216ENST00000565316 SDF4Q9BRK5 362 aa19.55■□□□□ 0.72
CLN3-216ENST00000565316 AZI2Q9H6S1 392 aa19.55■□□□□ 0.72
CLN3-216ENST00000565316 RC3H2Q9HBD1 1191 aaKnown RBP19.55■□□□□ 0.72
CLN3-216ENST00000565316 CDY2AQ9Y6F7 541 aa19.55■□□□□ 0.72
CLN3-216ENST00000565316 KLF18A0A0U1RQI7 1052 aa19.54■□□□□ 0.72
CLN3-216ENST00000565316 GOLGA8AA7E2F4 631 aa19.54■□□□□ 0.72
CLN3-216ENST00000565316 GOLGA8BA8MQT2 603 aa19.54■□□□□ 0.72
CLN3-216ENST00000565316 HMGB1P09429 215 aaKnown RBP19.54■□□□□ 0.72
CLN3-216ENST00000565316 LINC00271P0C7V0 271 aa19.54■□□□□ 0.72
CLN3-216ENST00000565316 GPM6BQ13491 265 aa19.54■□□□□ 0.72
CLN3-216ENST00000565316 PLCB4Q15147 1175 aa19.54■□□□□ 0.72
CLN3-216ENST00000565316 LEXMQ3ZCV2 418 aa19.54■□□□□ 0.72
CLN3-216ENST00000565316 TSHZ1Q6ZSZ6 1077 aa19.54■□□□□ 0.72
CLN3-216ENST00000565316 NIPA1Q7RTP0 329 aa19.54■□□□□ 0.72
CLN3-216ENST00000565316 TNPO1Q92973 898 aaKnown RBP19.54■□□□□ 0.72
CLN3-216ENST00000565316 SQORQ9Y6N5 450 aa19.54■□□□□ 0.72
CLN3-216ENST00000565316 C5orf67F2Z3F1 127 aa19.53■□□□□ 0.72
CLN3-216ENST00000565316 IGBP1P78318 339 aa19.53■□□□□ 0.72
CLN3-216ENST00000565316 COL19A1Q14993 1142 aa19.53■□□□□ 0.72
CLN3-216ENST00000565316 TIGD5Q53EQ6 642 aa19.53■□□□□ 0.72
CLN3-216ENST00000565316 FIBCD1Q8N539 461 aa19.53■□□□□ 0.72
CLN3-216ENST00000565316 CRYGNQ8WXF5 182 aa19.53■□□□□ 0.72
CLN3-216ENST00000565316 ZBTB10Q96DT7 871 aa19.53■□□□□ 0.72
CLN3-216ENST00000565316 C1QTNF1Q9BXJ1 281 aa19.53■□□□□ 0.72
CLN3-216ENST00000565316 AGO3Q9H9G7 860 aaKnown RBP19.53■□□□□ 0.72
CLN3-216ENST00000565316 TMEM260Q9NX78 707 aa19.53■□□□□ 0.72
CLN3-216ENST00000565316 PCDHA2Q9Y5H9 948 aa19.53■□□□□ 0.72
CLN3-216ENST00000565316 IGKV6D-21A0A0A0MT36 114 aa19.52■□□□□ 0.72
CLN3-216ENST00000565316 SLC26A2P50443 739 aa19.52■□□□□ 0.72
CLN3-216ENST00000565316 STAT5BP51692 787 aa19.52■□□□□ 0.72
CLN3-216ENST00000565316 PFKFB3Q16875 520 aaPredicted RBP19.52■□□□□ 0.72
CLN3-216ENST00000565316 IER5Q5VY09 327 aa19.52■□□□□ 0.72
CLN3-216ENST00000565316 CLP1Q92989 425 aaKnown RBP19.52■□□□□ 0.72
CLN3-216ENST00000565316 ZNF689Q96CS4 500 aaPredicted RBP19.52■□□□□ 0.72
CLN3-216ENST00000565316 FAM49AQ9H0Q0 323 aaPredicted RBP19.52■□□□□ 0.72
CLN3-216ENST00000565316 TRPC6Q9Y210 931 aa19.52■□□□□ 0.72
CLN3-216ENST00000565316 CCNE2O96020 404 aa19.51■□□□□ 0.71
CLN3-216ENST00000565316 RB1P06400 928 aa19.51■□□□□ 0.71
CLN3-216ENST00000565316 CYP3A4P08684 503 aa19.51■□□□□ 0.71
CLN3-216ENST00000565316 ADD1P35611 737 aaKnown RBP19.51■□□□□ 0.71
CLN3-216ENST00000565316 BMPR1AP36894 532 aa19.51■□□□□ 0.71
CLN3-216ENST00000565316 ABHD15Q6UXT9 468 aa19.51■□□□□ 0.71
CLN3-216ENST00000565316 CRIPAKQ8N1N5 446 aa19.51■□□□□ 0.71
CLN3-216ENST00000565316 FBXL16Q8N461 479 aa19.51■□□□□ 0.71
CLN3-216ENST00000565316 BANK1Q8NDB2 785 aa19.51■□□□□ 0.71
CLN3-216ENST00000565316 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.51■□□□□ 0.71
CLN3-216ENST00000565316 LINC01599Q8WXQ3 324 aa19.51■□□□□ 0.71
CLN3-216ENST00000565316 TTC3P53804 2025 aa19.51■□□□□ 0.71
CLN3-216ENST00000565316 NID2Q14112 1375 aa19.51■□□□□ 0.71
CLN3-216ENST00000565316 CCDC196A0A1B0GTZ2 297 aa19.51■□□□□ 0.71
CLN3-216ENST00000565316 SMIM35A0A1B0GVV1 85 aa19.51■□□□□ 0.71
CLN3-216ENST00000565316 ESYT2A0FGR8 921 aa19.51■□□□□ 0.71
CLN3-216ENST00000565316 POTEB3A0JP26 581 aa19.51■□□□□ 0.71
CLN3-216ENST00000565316 DHX15O43143 795 aaKnown RBP19.51■□□□□ 0.71
CLN3-216ENST00000565316 KCNA5P22460 613 aa19.51■□□□□ 0.71
CLN3-216ENST00000565316 CD52P31358 61 aa19.51■□□□□ 0.71
CLN3-216ENST00000565316 POTEBQ6S5H4 581 aa19.51■□□□□ 0.71
CLN3-216ENST00000565316 RTN4RL1Q86UN2 441 aaPredicted RBP19.51■□□□□ 0.71
CLN3-216ENST00000565316 NME8Q8N427 588 aa19.51■□□□□ 0.71
CLN3-216ENST00000565316 NEK9Q8TD19 979 aa19.51■□□□□ 0.71
CLN3-216ENST00000565316 TRAPPC12Q8WVT3 735 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms