RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 CLEC4DQ8WXI8 215 aa9.98□□□□□ -0.81
VPS39-207ENST00000563692 STAMQ92783 540 aa9.98□□□□□ -0.81
VPS39-207ENST00000563692 PLIN2Q99541 437 aa9.98□□□□□ -0.81
VPS39-207ENST00000563692 LBHD1Q9BQE6 289 aaPredicted RBP9.98□□□□□ -0.81
VPS39-207ENST00000563692 BLZF1Q9H2G9 400 aa9.98□□□□□ -0.81
VPS39-207ENST00000563692 SPC25Q9HBM1 224 aa9.98□□□□□ -0.81
VPS39-207ENST00000563692 FAM184BQ9ULE4 1060 aa9.98□□□□□ -0.81
VPS39-207ENST00000563692 DNAJC25-GNG10A0A024R161 153 aa9.97□□□□□ -0.81
VPS39-207ENST00000563692 A0A1W2PPC1 479 aa9.97□□□□□ -0.81
VPS39-207ENST00000563692 ASB14A6NK59 587 aa9.97□□□□□ -0.81
VPS39-207ENST00000563692 FAM86B1E9PN63 330 aa9.97□□□□□ -0.81
VPS39-207ENST00000563692 MSH4O15457 936 aa9.97□□□□□ -0.81
VPS39-207ENST00000563692 FAM86B2P0C5J1 330 aa9.97□□□□□ -0.81
VPS39-207ENST00000563692 SYN1P17600 705 aa9.97□□□□□ -0.81
VPS39-207ENST00000563692 CDK11BP21127 795 aaKnown RBP9.97□□□□□ -0.81
VPS39-207ENST00000563692 CDC25BP30305 580 aa9.97□□□□□ -0.81
VPS39-207ENST00000563692 GRB10Q13322 594 aa9.97□□□□□ -0.81
VPS39-207ENST00000563692 CUL4BQ13620 913 aa9.97□□□□□ -0.81
VPS39-207ENST00000563692 DHX8Q14562 1220 aaKnown RBP9.97□□□□□ -0.81
VPS39-207ENST00000563692 LRRC41Q15345 812 aa9.97□□□□□ -0.81
VPS39-207ENST00000563692 LRRC26Q2I0M4 334 aa9.97□□□□□ -0.81
VPS39-207ENST00000563692 CEP55Q53EZ4 464 aa9.97□□□□□ -0.81
VPS39-207ENST00000563692 NAALADL2Q58DX5 795 aa9.97□□□□□ -0.81
VPS39-207ENST00000563692 HYIQ5T013 277 aa9.97□□□□□ -0.81
VPS39-207ENST00000563692 MAMDC4Q6UXC1 1216 aa9.97□□□□□ -0.81
VPS39-207ENST00000563692 NIPA1Q7RTP0 329 aa9.97□□□□□ -0.81
VPS39-207ENST00000563692 ETNPPLQ8TBG4 499 aa9.97□□□□□ -0.81
VPS39-207ENST00000563692 LARP4BQ92615 738 aaKnown RBP9.97□□□□□ -0.81
VPS39-207ENST00000563692 RAD54LQ92698 747 aa9.97□□□□□ -0.81
VPS39-207ENST00000563692 MRFAP1L1Q96HT8 127 aa9.97□□□□□ -0.81
VPS39-207ENST00000563692 MMTAG2Q9BU76 263 aaKnown RBP9.97□□□□□ -0.81
VPS39-207ENST00000563692 ABHD16BQ9H3Z7 469 aa9.97□□□□□ -0.81
VPS39-207ENST00000563692 TRIOBPQ9H2D6 2365 aa9.96□□□□□ -0.81
VPS39-207ENST00000563692 PVALEFA0A1B0GWK0 134 aa9.96□□□□□ -0.82
VPS39-207ENST00000563692 POTEMA6NI47 508 aa9.96□□□□□ -0.82
VPS39-207ENST00000563692 MEIS1O00470 390 aa9.96□□□□□ -0.82
VPS39-207ENST00000563692 RHOBTB3O94955 611 aa9.96□□□□□ -0.82
VPS39-207ENST00000563692 PGK1P00558 417 aa9.96□□□□□ -0.82
VPS39-207ENST00000563692 SERPINC1P01008 464 aa9.96□□□□□ -0.82
VPS39-207ENST00000563692 ZNF865P0CJ78 1059 aaPredicted RBP9.96□□□□□ -0.82
VPS39-207ENST00000563692 TAL1P17542 331 aaPredicted RBP9.96□□□□□ -0.82
VPS39-207ENST00000563692 BMP6P22004 513 aa9.96□□□□□ -0.82
VPS39-207ENST00000563692 FXR1P51114 621 aaKnown RBP eCLIP9.96□□□□□ -0.82
VPS39-207ENST00000563692 PSMD2Q13200 908 aa9.96□□□□□ -0.82
VPS39-207ENST00000563692 ACVR2BQ13705 512 aa9.96□□□□□ -0.82
VPS39-207ENST00000563692 NCAPHQ15003 741 aa9.96□□□□□ -0.82
VPS39-207ENST00000563692 TPD52L1Q16890 204 aaPredicted RBP9.96□□□□□ -0.82
VPS39-207ENST00000563692 TMEM119Q4V9L6 283 aa9.96□□□□□ -0.82
VPS39-207ENST00000563692 ARHGEF16Q5VV41 709 aa9.96□□□□□ -0.82
VPS39-207ENST00000563692 SPATA1Q5VX52 437 aa9.96□□□□□ -0.82
VPS39-207ENST00000563692 NCAPH2Q6IBW4 605 aa9.96□□□□□ -0.82
VPS39-207ENST00000563692 CNNM4Q6P4Q7 775 aa9.96□□□□□ -0.82
VPS39-207ENST00000563692 NSMFQ6X4W1 530 aa9.96□□□□□ -0.82
VPS39-207ENST00000563692 ARMCX2Q7L311 632 aa9.96□□□□□ -0.82
VPS39-207ENST00000563692 SYTL5Q8TDW5 730 aaPredicted RBP9.96□□□□□ -0.82
VPS39-207ENST00000563692 PNMA5Q96PV4 448 aa9.96□□□□□ -0.82
VPS39-207ENST00000563692 MTRQ99707 1265 aa9.96□□□□□ -0.82
VPS39-207ENST00000563692 MXRA8Q9BRK3 442 aa9.96□□□□□ -0.82
VPS39-207ENST00000563692 ZNF577Q9BSK1 485 aa9.96□□□□□ -0.82
VPS39-207ENST00000563692 WDR11Q9BZH6 1224 aa9.96□□□□□ -0.82
VPS39-207ENST00000563692 TRIM9Q9C026 710 aa9.96□□□□□ -0.82
VPS39-207ENST00000563692 A1CFQ9NQ94 594 aaKnown RBP9.96□□□□□ -0.82
VPS39-207ENST00000563692 EXOC1Q9NV70 894 aa9.96□□□□□ -0.82
VPS39-207ENST00000563692 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.96□□□□□ -0.82
VPS39-207ENST00000563692 KIAA1024Q9UPX6 916 aa9.96□□□□□ -0.82
VPS39-207ENST00000563692 DNM3Q9UQ16 869 aa9.96□□□□□ -0.82
VPS39-207ENST00000563692 ATP11BQ9Y2G3 1177 aa9.96□□□□□ -0.82
VPS39-207ENST00000563692 IGLV3-22A0A075B6J6 115 aa9.95□□□□□ -0.82
VPS39-207ENST00000563692 PPP1R3GB7ZBB8 358 aa9.95□□□□□ -0.82
VPS39-207ENST00000563692 NFIBO00712 420 aa9.95□□□□□ -0.82
VPS39-207ENST00000563692 MAFGO15525 162 aa9.95□□□□□ -0.82
VPS39-207ENST00000563692 AP5Z1O43299 807 aa9.95□□□□□ -0.82
VPS39-207ENST00000563692 GAS7O60861 476 aa9.95□□□□□ -0.82
VPS39-207ENST00000563692 DUSP11O75319 330 aaKnown RBP9.95□□□□□ -0.82
VPS39-207ENST00000563692 SNAI1O95863 264 aaPredicted RBP9.95□□□□□ -0.82
VPS39-207ENST00000563692 MUTP22033 750 aa9.95□□□□□ -0.82
VPS39-207ENST00000563692 MSNP26038 577 aaKnown RBP9.95□□□□□ -0.82
VPS39-207ENST00000563692 RPA1P27694 616 aa9.95□□□□□ -0.82
VPS39-207ENST00000563692 CASP1P29466 404 aa9.95□□□□□ -0.82
VPS39-207ENST00000563692 BMP8BP34820 402 aa9.95□□□□□ -0.82
VPS39-207ENST00000563692 ADCYAP1R1P41586 468 aa9.95□□□□□ -0.82
VPS39-207ENST00000563692 MAGEA10P43363 369 aaPredicted RBP9.95□□□□□ -0.82
VPS39-207ENST00000563692 RTP1P59025 263 aa9.95□□□□□ -0.82
VPS39-207ENST00000563692 RPS6P62753 249 aaKnown RBP9.95□□□□□ -0.82
VPS39-207ENST00000563692 ASIC1P78348 528 aa9.95□□□□□ -0.82
VPS39-207ENST00000563692 KMT5BQ4FZB7 885 aa9.95□□□□□ -0.82
VPS39-207ENST00000563692 MUM1L1Q5H9M0 696 aa9.95□□□□□ -0.82
VPS39-207ENST00000563692 LRCH2Q5VUJ6 765 aa9.95□□□□□ -0.82
VPS39-207ENST00000563692 PCNX4Q63HM2 1172 aa9.95□□□□□ -0.82
VPS39-207ENST00000563692 NLRX1Q86UT6 975 aa9.95□□□□□ -0.82
VPS39-207ENST00000563692 FAM133AQ8N9E0 248 aa9.95□□□□□ -0.82
VPS39-207ENST00000563692 ANKRD20A12PQ8NF67 263 aa9.95□□□□□ -0.82
VPS39-207ENST00000563692 SLC5A5Q92911 643 aa9.95□□□□□ -0.82
VPS39-207ENST00000563692 LENG9Q96B70 501 aa9.95□□□□□ -0.82
VPS39-207ENST00000563692 RMDN3Q96TC7 470 aa9.95□□□□□ -0.82
VPS39-207ENST00000563692 MPHOSPH6Q99547 160 aaKnown RBP9.95□□□□□ -0.82
VPS39-207ENST00000563692 RIT2Q99578 217 aa9.95□□□□□ -0.82
VPS39-207ENST00000563692 POLR3CQ9BUI4 534 aaPredicted RBP9.95□□□□□ -0.82
VPS39-207ENST00000563692 TEKT3Q9BXF9 490 aa9.95□□□□□ -0.82
VPS39-207ENST00000563692 UBE2OQ9C0C9 1292 aaKnown RBP9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms