RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 MYBP10242 640 aa10.13□□□□□ -0.79
VPS39-205ENST00000562258 XRCC6P12956 609 aaKnown RBP eCLIP10.13□□□□□ -0.79
VPS39-205ENST00000562258 YWHABP31946 246 aaKnown RBP10.13□□□□□ -0.79
VPS39-205ENST00000562258 TCF7P36402 384 aaPredicted RBP10.13□□□□□ -0.79
VPS39-205ENST00000562258 KMT5BQ4FZB7 885 aa10.13□□□□□ -0.79
VPS39-205ENST00000562258 GTF3C2Q8WUA4 911 aaPredicted RBP10.13□□□□□ -0.79
VPS39-205ENST00000562258 WNK4Q96J92 1243 aa10.13□□□□□ -0.79
VPS39-205ENST00000562258 GSDMAQ96QA5 445 aa10.13□□□□□ -0.79
VPS39-205ENST00000562258 ACCSQ96QU6 501 aa10.13□□□□□ -0.79
VPS39-205ENST00000562258 PARP4Q9UKK3 1724 aaKnown RBP10.13□□□□□ -0.79
VPS39-205ENST00000562258 ANKRD26Q9UPS8 1709 aa10.13□□□□□ -0.79
VPS39-205ENST00000562258 KCNJ18B7U540 433 aa10.13□□□□□ -0.79
VPS39-205ENST00000562258 BTBD19C9JJ37 291 aa10.13□□□□□ -0.79
VPS39-205ENST00000562258 LRRN2O75325 713 aa10.13□□□□□ -0.79
VPS39-205ENST00000562258 KIF4AO95239 1232 aa10.13□□□□□ -0.79
VPS39-205ENST00000562258 CYP2C9P11712 490 aa10.13□□□□□ -0.79
VPS39-205ENST00000562258 CD58P19256 250 aa10.13□□□□□ -0.79
VPS39-205ENST00000562258 KCNJ12Q14500 433 aa10.13□□□□□ -0.79
VPS39-205ENST00000562258 PTPROQ16827 1216 aa10.13□□□□□ -0.79
VPS39-205ENST00000562258 ZNF568Q3ZCX4 644 aa10.13□□□□□ -0.79
VPS39-205ENST00000562258 ZNF394Q53GI3 561 aa10.13□□□□□ -0.79
VPS39-205ENST00000562258 FAM186BQ8IYM0 893 aa10.13□□□□□ -0.79
VPS39-205ENST00000562258 LBHD1Q9BQE6 289 aaPredicted RBP10.13□□□□□ -0.79
VPS39-205ENST00000562258 CCDC94Q9BW85 323 aaPredicted RBP10.13□□□□□ -0.79
VPS39-205ENST00000562258 AOC2O75106 756 aa10.13□□□□□ -0.79
VPS39-205ENST00000562258 ELNP15502 786 aa10.13□□□□□ -0.79
VPS39-205ENST00000562258 INHBEP58166 350 aa10.13□□□□□ -0.79
VPS39-205ENST00000562258 EPHA7Q15375 998 aa10.13□□□□□ -0.79
VPS39-205ENST00000562258 SCARA5Q6ZMJ2 495 aa10.13□□□□□ -0.79
VPS39-205ENST00000562258 EXOC8Q8IYI6 725 aa10.13□□□□□ -0.79
VPS39-205ENST00000562258 C7orf43Q8WVR3 580 aa10.13□□□□□ -0.79
VPS39-205ENST00000562258 MTRQ99707 1265 aa10.13□□□□□ -0.79
VPS39-205ENST00000562258 POLR3FQ9H1D9 316 aaPredicted RBP10.13□□□□□ -0.79
VPS39-205ENST00000562258 SMARCAD1Q9H4L7 1026 aa10.13□□□□□ -0.79
VPS39-205ENST00000562258 TLR3O15455 904 aaKnown RBP10.12□□□□□ -0.79
VPS39-205ENST00000562258 SLC37A4O43826 429 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 PGK1P00558 417 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 KCNA3P22001 575 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 GRIN1Q05586 938 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 KIF5AQ12840 1032 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 CEP57Q86XR8 500 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 GMCL1P1Q8NEA9 526 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 XPO4Q9C0E2 1151 aaKnown RBP10.12□□□□□ -0.79
VPS39-205ENST00000562258 C1orf112Q9NSG2 853 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 USTQ9Y2C2 406 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 ATP11BQ9Y2G3 1177 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 STRCP1A6NGW2 1772 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 SYNJ2BP-COX16A0A087WUM0 186 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 ADCYAP1R1P41586 468 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 PAFAH1B1P43034 410 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 FLT3LGP49771 235 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 ACTR2P61160 394 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 FKBP3Q00688 224 aaKnown RBP10.12□□□□□ -0.79
VPS39-205ENST00000562258 BEX3Q00994 111 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 PRKCEQ02156 737 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 UVSSAQ2YD98 709 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 KCNV1Q6PIU1 500 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 LSM14BQ9BX40 385 aaKnown RBP10.12□□□□□ -0.79
VPS39-205ENST00000562258 COX16Q9P0S2 106 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 PIN4Q9Y237 131 aaKnown RBP10.12□□□□□ -0.79
VPS39-205ENST00000562258 ZDHHC9Q9Y397 364 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 PQBP1O60828 265 aaKnown RBP10.12□□□□□ -0.79
VPS39-205ENST00000562258 GAP43P17677 238 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 ABCB4P21439 1286 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 NMT1P30419 496 aaKnown RBP10.12□□□□□ -0.79
VPS39-205ENST00000562258 DCUN1D2Q6PH85 259 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 CATSPERGQ6ZRH7 1159 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 CCDC50Q8IVM0 306 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 ZBTB9Q96C00 473 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 SAAL1Q96ER3 474 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 CUEDC2Q9H467 287 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 WDR70Q9NW82 654 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 SUCLA2Q9P2R7 463 aaPredicted RBP10.12□□□□□ -0.79
VPS39-205ENST00000562258 MYO1AQ9UBC5 1043 aa10.12□□□□□ -0.79
VPS39-205ENST00000562258 MAP1BP46821 2468 aaKnown RBP10.12□□□□□ -0.79
VPS39-205ENST00000562258 ADCY3O60266 1144 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 PHKA2P46019 1235 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 ADKP55263 362 aaKnown RBP10.11□□□□□ -0.79
VPS39-205ENST00000562258 POLR2FP61218 127 aaKnown RBP10.11□□□□□ -0.79
VPS39-205ENST00000562258 LACTBP83111 547 aaPredicted RBP10.11□□□□□ -0.79
VPS39-205ENST00000562258 KLHL30Q0D2K2 578 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 DGKDQ16760 1214 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 XKR3Q5GH77 459 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 ARMCX2Q7L311 632 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 TCP11Q8WWU5 503 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 KIFAP3Q92845 792 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 FAM213AQ9BRX8 229 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 PPP1R12CQ9BZL4 782 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 RIOX1Q9H6W3 641 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.11□□□□□ -0.79
VPS39-205ENST00000562258 GSTTP1A0A1W2PQM5 241 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 SPDYE5A6NIY4 337 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 MSH4O15457 936 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 PIK3CAP42336 1068 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 NLRP11P59045 1033 aaKnown RBP10.11□□□□□ -0.79
VPS39-205ENST00000562258 BMS1Q14692 1282 aaKnown RBP10.11□□□□□ -0.79
VPS39-205ENST00000562258 TMEM132BQ14DG7 1078 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 GOLGA5Q8TBA6 731 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 COPS5Q92905 334 aa10.11□□□□□ -0.79
VPS39-205ENST00000562258 ALS2CR12Q96Q35 445 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms