RNA–Protein interactions for RNA: ENST00000559511.5

SPG11-217, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-217ENST00000559511 MARSP56192 900 aaKnown RBP12.21□□□□□ -0.45
SPG11-217ENST00000559511 UBXN2AP68543 259 aa12.21□□□□□ -0.45
SPG11-217ENST00000559511 TRIM59Q8IWR1 403 aa12.21□□□□□ -0.45
SPG11-217ENST00000559511 PURBQ96QR8 312 aaKnown RBP12.21□□□□□ -0.45
SPG11-217ENST00000559511 RUSC1Q9BVN2 902 aa12.21□□□□□ -0.45
SPG11-217ENST00000559511 FBXO28Q9NVF7 368 aa12.21□□□□□ -0.45
SPG11-217ENST00000559511 HACL1Q9UJ83 578 aa12.21□□□□□ -0.45
SPG11-217ENST00000559511 ZNF541Q9H0D2 1346 aa12.21□□□□□ -0.46
SPG11-217ENST00000559511 MYH11P35749 1972 aa12.21□□□□□ -0.46
SPG11-217ENST00000559511 NOL4O94818 638 aa12.2□□□□□ -0.46
SPG11-217ENST00000559511 EIF4A3P38919 411 aaKnown RBP12.2□□□□□ -0.46
SPG11-217ENST00000559511 KIF11P52732 1056 aa12.2□□□□□ -0.46
SPG11-217ENST00000559511 PDXDC1Q6P996 788 aa12.2□□□□□ -0.46
SPG11-217ENST00000559511 SAMD1Q6SPF0 538 aaPredicted RBP12.2□□□□□ -0.46
SPG11-217ENST00000559511 EPM2AIP1Q7L775 607 aaPredicted RBP12.2□□□□□ -0.46
SPG11-217ENST00000559511 NEK11Q8NG66 645 aa12.2□□□□□ -0.46
SPG11-217ENST00000559511 POLR3CQ9BUI4 534 aaPredicted RBP12.2□□□□□ -0.46
SPG11-217ENST00000559511 ZNF341Q9BYN7 854 aa12.2□□□□□ -0.46
SPG11-217ENST00000559511 BHMT2Q9H2M3 363 aa12.2□□□□□ -0.46
SPG11-217ENST00000559511 POLD4Q9HCU8 107 aa12.2□□□□□ -0.46
SPG11-217ENST00000559511 ST7Q9NRC1 585 aa12.2□□□□□ -0.46
SPG11-217ENST00000559511 MACROD2A1Z1Q3 448 aa12.2□□□□□ -0.46
SPG11-217ENST00000559511 GCOM1H8Y6P7 765 aaPredicted RBP12.2□□□□□ -0.46
SPG11-217ENST00000559511 LCA5LO95447 670 aa12.2□□□□□ -0.46
SPG11-217ENST00000559511 GNA14O95837 355 aa12.2□□□□□ -0.46
SPG11-217ENST00000559511 POLR2MP0CAP2 368 aa12.2□□□□□ -0.46
SPG11-217ENST00000559511 MYBP10242 640 aa12.2□□□□□ -0.46
SPG11-217ENST00000559511 APBA1Q02410 837 aa12.2□□□□□ -0.46
SPG11-217ENST00000559511 ADAM9Q13443 819 aa12.2□□□□□ -0.46
SPG11-217ENST00000559511 CTTNQ14247 550 aaKnown RBP12.2□□□□□ -0.46
SPG11-217ENST00000559511 SPA17Q15506 151 aa12.2□□□□□ -0.46
SPG11-217ENST00000559511 EDRF1Q3B7T1 1238 aa12.2□□□□□ -0.46
SPG11-217ENST00000559511 OTOP1Q7RTM1 612 aa12.2□□□□□ -0.46
SPG11-217ENST00000559511 FAM160B2Q86V87 743 aa12.2□□□□□ -0.46
SPG11-217ENST00000559511 EHBP1Q8NDI1 1231 aa12.2□□□□□ -0.46
SPG11-217ENST00000559511 ZFP91Q96JP5 570 aaPredicted RBP12.2□□□□□ -0.46
SPG11-217ENST00000559511 PNKPQ96T60 521 aa12.2□□□□□ -0.46
SPG11-217ENST00000559511 FEM1BQ9UK73 627 aa12.2□□□□□ -0.46
SPG11-217ENST00000559511 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.2□□□□□ -0.46
SPG11-217ENST00000559511 STK24Q9Y6E0 443 aa12.2□□□□□ -0.46
SPG11-217ENST00000559511 COL11A1P12107 1806 aaPredicted RBP12.19□□□□□ -0.46
SPG11-217ENST00000559511 CTAGE15A4D2H0 777 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 SRGAP2O75044 1071 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 PSMD10O75832 226 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 SASH3O75995 380 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 KIF20AO95235 890 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 TBC1D8O95759 1140 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 CTAGE8P0CG41 777 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 NR2F2P24468 414 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 INPP5BP32019 993 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 PLA2G4AP47712 749 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 TRAF1Q13077 416 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 LRCH2Q5VUJ6 765 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 PAPD7Q5XG87 772 aaKnown RBP12.19□□□□□ -0.46
SPG11-217ENST00000559511 PPP4R3CPQ6ZMV5 832 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 CACNA2D4Q7Z3S7 1137 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 CTAGE6Q86UF2 777 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 CTAGE4Q8IX94 777 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 NOA1Q8NC60 698 aaKnown RBP12.19□□□□□ -0.46
SPG11-217ENST00000559511 HSD17B14Q9BPX1 270 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 CRACR2AQ9BSW2 395 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 LSM14BQ9BX40 385 aaKnown RBP12.19□□□□□ -0.46
SPG11-217ENST00000559511 IFIH1Q9BYX4 1025 aaKnown RBP12.19□□□□□ -0.46
SPG11-217ENST00000559511 DEFB129Q9H1M3 183 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 NLRC4Q9NPP4 1024 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 RABGAP1Q9Y3P9 1069 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 PCDHA13Q9Y5I0 950 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 CHMP2AO43633 222 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 PRPF6O94906 941 aaKnown RBP12.19□□□□□ -0.46
SPG11-217ENST00000559511 EYA4O95677 639 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 KIF5AQ12840 1032 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 KNOP1Q1ED39 458 aaKnown RBP12.19□□□□□ -0.46
SPG11-217ENST00000559511 ASTE1Q2TB18 679 aaPredicted RBP12.19□□□□□ -0.46
SPG11-217ENST00000559511 NBPF12Q5TAG4 269 aaPredicted RBP12.19□□□□□ -0.46
SPG11-217ENST00000559511 HGSNATQ68CP4 663 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 MSANTD4Q8NCY6 345 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 PIGOQ8TEQ8 1089 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 SLC5A5Q92911 643 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 EDEM3Q9BZQ6 932 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 DEF6Q9H4E7 631 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 CEP72Q9P209 647 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 SAR1BQ9Y6B6 198 aa12.19□□□□□ -0.46
SPG11-217ENST00000559511 RLFQ13129 1914 aa12.18□□□□□ -0.46
SPG11-217ENST00000559511 LOXHD1Q8IVV2 1947 aa12.18□□□□□ -0.46
SPG11-217ENST00000559511 ZBTB39O15060 712 aa12.18□□□□□ -0.46
SPG11-217ENST00000559511 CETN3O15182 167 aa12.18□□□□□ -0.46
SPG11-217ENST00000559511 AKR1B10O60218 316 aa12.18□□□□□ -0.46
SPG11-217ENST00000559511 TLR2O60603 784 aa12.18□□□□□ -0.46
SPG11-217ENST00000559511 CTNND1O60716 968 aaKnown RBP12.18□□□□□ -0.46
SPG11-217ENST00000559511 SLITRK3O94933 977 aa12.18□□□□□ -0.46
SPG11-217ENST00000559511 RHOXF2BP0C7M4 288 aa12.18□□□□□ -0.46
SPG11-217ENST00000559511 GFPT1Q06210 699 aaPredicted RBP12.18□□□□□ -0.46
SPG11-217ENST00000559511 PPP2R5CQ13362 524 aa12.18□□□□□ -0.46
SPG11-217ENST00000559511 RINT1Q6NUQ1 792 aa12.18□□□□□ -0.46
SPG11-217ENST00000559511 LDHDQ86WU2 507 aa12.18□□□□□ -0.46
SPG11-217ENST00000559511 UPF1Q92900 1129 aaKnown RBP eCLIP12.18□□□□□ -0.46
SPG11-217ENST00000559511 SECISBP2LQ93073 1101 aaKnown RBP12.18□□□□□ -0.46
SPG11-217ENST00000559511 DYDC2Q96IM9 177 aa12.18□□□□□ -0.46
SPG11-217ENST00000559511 RHOXF2Q9BQY4 288 aa12.18□□□□□ -0.46
SPG11-217ENST00000559511 TSGA10Q9BZW7 698 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms