RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 GUF1Q8N442 669 aaKnown RBP12.93□□□□□ -0.34
SHMT2-212ENST00000554467 CNKSR2Q8WXI2 1034 aa12.93□□□□□ -0.34
SHMT2-212ENST00000554467 UBXN4Q92575 508 aa12.93□□□□□ -0.34
SHMT2-212ENST00000554467 PANX2Q96RD6 677 aa12.93□□□□□ -0.34
SHMT2-212ENST00000554467 TAAR1Q96RJ0 339 aa12.93□□□□□ -0.34
SHMT2-212ENST00000554467 UNC45AQ9H3U1 944 aa12.93□□□□□ -0.34
SHMT2-212ENST00000554467 TFR2Q9UP52 801 aa12.93□□□□□ -0.34
SHMT2-212ENST00000554467 TBX3O15119 743 aa12.92□□□□□ -0.34
SHMT2-212ENST00000554467 PSMD10O75832 226 aa12.92□□□□□ -0.34
SHMT2-212ENST00000554467 TPM1P09493 284 aa12.92□□□□□ -0.34
SHMT2-212ENST00000554467 PTPRAP18433 802 aa12.92□□□□□ -0.34
SHMT2-212ENST00000554467 GIT2Q14161 759 aa12.92□□□□□ -0.34
SHMT2-212ENST00000554467 TMCO3Q6UWJ1 677 aa12.92□□□□□ -0.34
SHMT2-212ENST00000554467 CCDC65Q8IXS2 484 aa12.92□□□□□ -0.34
SHMT2-212ENST00000554467 CARD6Q9BX69 1037 aa12.92□□□□□ -0.34
SHMT2-212ENST00000554467 SLC38A10Q9HBR0 1119 aa12.92□□□□□ -0.34
SHMT2-212ENST00000554467 IPO5O00410 1097 aaKnown RBP12.92□□□□□ -0.34
SHMT2-212ENST00000554467 SLITRK3O94933 977 aa12.92□□□□□ -0.34
SHMT2-212ENST00000554467 TRIM21P19474 475 aaKnown RBP12.92□□□□□ -0.34
SHMT2-212ENST00000554467 RPS6P62753 249 aaKnown RBP12.92□□□□□ -0.34
SHMT2-212ENST00000554467 KCNA1Q09470 495 aa12.92□□□□□ -0.34
SHMT2-212ENST00000554467 TRIM65Q6PJ69 517 aa12.92□□□□□ -0.34
SHMT2-212ENST00000554467 CNGA4Q8IV77 575 aa12.92□□□□□ -0.34
SHMT2-212ENST00000554467 KSR1Q8IVT5 923 aa12.92□□□□□ -0.34
SHMT2-212ENST00000554467 SCFD1Q8WVM8 642 aa12.92□□□□□ -0.34
SHMT2-212ENST00000554467 WDR24Q96S15 920 aa12.92□□□□□ -0.34
SHMT2-212ENST00000554467 FAM207AQ9NSI2 230 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-212ENST00000554467 PPP1R9AQ9ULJ8 1098 aa12.92□□□□□ -0.34
SHMT2-212ENST00000554467 RABGAP1Q9Y3P9 1069 aa12.92□□□□□ -0.34
SHMT2-212ENST00000554467 LTBP3Q9NS15 1303 aa12.92□□□□□ -0.34
SHMT2-212ENST00000554467 CENPFP49454 3210 aa12.92□□□□□ -0.34
SHMT2-212ENST00000554467 RASSF10A6NK89 507 aa12.91□□□□□ -0.34
SHMT2-212ENST00000554467 PRPF6O94906 941 aaKnown RBP12.91□□□□□ -0.34
SHMT2-212ENST00000554467 MYBP10242 640 aa12.91□□□□□ -0.34
SHMT2-212ENST00000554467 BACE1P56817 501 aa12.91□□□□□ -0.34
SHMT2-212ENST00000554467 SMC1AQ14683 1233 aaKnown RBP12.91□□□□□ -0.34
SHMT2-212ENST00000554467 MCTP2Q6DN12 878 aa12.91□□□□□ -0.34
SHMT2-212ENST00000554467 SCYL3Q8IZE3 742 aa12.91□□□□□ -0.34
SHMT2-212ENST00000554467 LPAR1Q92633 364 aa12.91□□□□□ -0.34
SHMT2-212ENST00000554467 LRRC27Q9C0I9 530 aa12.91□□□□□ -0.34
SHMT2-212ENST00000554467 PCDHA2Q9Y5H9 948 aa12.91□□□□□ -0.34
SHMT2-212ENST00000554467 EPHB6O15197 1021 aa12.91□□□□□ -0.34
SHMT2-212ENST00000554467 PLA2G6O60733 806 aa12.91□□□□□ -0.34
SHMT2-212ENST00000554467 APBA1Q02410 837 aa12.91□□□□□ -0.34
SHMT2-212ENST00000554467 PLS1Q14651 629 aa12.91□□□□□ -0.34
SHMT2-212ENST00000554467 LRRC55Q6ZSA7 311 aa12.91□□□□□ -0.34
SHMT2-212ENST00000554467 ZNF280CQ8ND82 737 aa12.91□□□□□ -0.34
SHMT2-212ENST00000554467 SMCR8Q8TEV9 937 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-212ENST00000554467 KCNH7Q9NS40 1196 aa12.91□□□□□ -0.34
SHMT2-212ENST00000554467 ADAM21Q9UKJ8 722 aa12.91□□□□□ -0.34
SHMT2-212ENST00000554467 ITIH6Q6UXX5 1313 aa12.91□□□□□ -0.34
SHMT2-212ENST00000554467 TMEM150BA6NC51 233 aa12.91□□□□□ -0.34
SHMT2-212ENST00000554467 DCAF15Q66K64 600 aa12.91□□□□□ -0.34
SHMT2-212ENST00000554467 SYT2Q8N9I0 419 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-212ENST00000554467 SYTL5Q8TDW5 730 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-212ENST00000554467 SLC5A5Q92911 643 aa12.91□□□□□ -0.34
SHMT2-212ENST00000554467 H3BQF6 201 aa12.9□□□□□ -0.34
SHMT2-212ENST00000554467 VWA5AO00534 786 aa12.9□□□□□ -0.34
SHMT2-212ENST00000554467 ZSCAN12O43309 604 aa12.9□□□□□ -0.34
SHMT2-212ENST00000554467 GUCY2CP25092 1073 aa12.9□□□□□ -0.34
SHMT2-212ENST00000554467 HSD17B4P51659 736 aa12.9□□□□□ -0.34
SHMT2-212ENST00000554467 ETF1P62495 437 aaKnown RBP12.9□□□□□ -0.34
SHMT2-212ENST00000554467 MRPS9P82933 396 aaKnown RBP12.9□□□□□ -0.34
SHMT2-212ENST00000554467 TRAF1Q13077 416 aa12.9□□□□□ -0.34
SHMT2-212ENST00000554467 HSD17B14Q9BPX1 270 aa12.9□□□□□ -0.34
SHMT2-212ENST00000554467 CRACR2AQ9BSW2 395 aa12.9□□□□□ -0.34
SHMT2-212ENST00000554467 LUC7L2Q9Y383 392 aaKnown RBP12.9□□□□□ -0.34
SHMT2-212ENST00000554467 SAMM50Q9Y512 469 aa12.9□□□□□ -0.34
SHMT2-212ENST00000554467 ADM5C9JUS6 153 aa12.9□□□□□ -0.34
SHMT2-212ENST00000554467 KIF2AO00139 706 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-212ENST00000554467 TADA3O75528 432 aa12.9□□□□□ -0.34
SHMT2-212ENST00000554467 LMNB1P20700 586 aa12.9□□□□□ -0.34
SHMT2-212ENST00000554467 KCNJ6P48051 423 aa12.9□□□□□ -0.34
SHMT2-212ENST00000554467 DNM2P50570 870 aa12.9□□□□□ -0.34
SHMT2-212ENST00000554467 CC2D1AQ6P1N0 951 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-212ENST00000554467 NOC3LQ8WTT2 800 aaKnown RBP12.9□□□□□ -0.34
SHMT2-212ENST00000554467 TSG101Q99816 390 aa12.9□□□□□ -0.34
SHMT2-212ENST00000554467 MMRN2Q9H8L6 949 aa12.9□□□□□ -0.34
SHMT2-212ENST00000554467 ADGRG1Q9Y653 693 aa12.9□□□□□ -0.34
SHMT2-212ENST00000554467 CCDC40Q4G0X9 1142 aa12.9□□□□□ -0.35
SHMT2-212ENST00000554467 FAM114A1Q8IWE2 563 aa12.9□□□□□ -0.35
SHMT2-212ENST00000554467 GOLGA5Q8TBA6 731 aa12.9□□□□□ -0.35
SHMT2-212ENST00000554467 MXRA8Q9BRK3 442 aa12.9□□□□□ -0.35
SHMT2-212ENST00000554467 NDST4Q9H3R1 872 aa12.9□□□□□ -0.35
SHMT2-212ENST00000554467 TULP1O00294 542 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-212ENST00000554467 ZBED4O75132 1171 aa12.89□□□□□ -0.35
SHMT2-212ENST00000554467 PSMD2Q13200 908 aa12.89□□□□□ -0.35
SHMT2-212ENST00000554467 BAATQ14032 418 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-212ENST00000554467 VWA3BQ502W6 1294 aa12.89□□□□□ -0.35
SHMT2-212ENST00000554467 SNRNP48Q6IEG0 339 aaKnown RBP12.89□□□□□ -0.35
SHMT2-212ENST00000554467 RINT1Q6NUQ1 792 aa12.89□□□□□ -0.35
SHMT2-212ENST00000554467 EP400NLQ6ZTU2 488 aa12.89□□□□□ -0.35
SHMT2-212ENST00000554467 LXNQ9BS40 222 aa12.89□□□□□ -0.35
SHMT2-212ENST00000554467 RNF181Q9P0P0 153 aa12.89□□□□□ -0.35
SHMT2-212ENST00000554467 TESPA1A2RU30 521 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-212ENST00000554467 CCDC175P0C221 793 aa12.89□□□□□ -0.35
SHMT2-212ENST00000554467 NMT1P30419 496 aaKnown RBP12.89□□□□□ -0.35
SHMT2-212ENST00000554467 HOXD13P35453 343 aa12.89□□□□□ -0.35
SHMT2-212ENST00000554467 SP4Q02446 784 aa12.89□□□□□ -0.35
SHMT2-212ENST00000554467 ITGB3BPQ13352 177 aaPredicted RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms