RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 GRB10Q13322 594 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 STIM1Q13586 685 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 TNIP1Q15025 636 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 TPD52L1Q16890 204 aaPredicted RBP6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 FILIP1LQ4L180 1135 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 TCP11X2Q5H9J9 407 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 INTS6LQ5JSJ4 861 aaKnown RBP6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 DNTTIP2Q5QJE6 756 aaKnown RBP6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 SYDE2Q5VT97 1194 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 KRT79Q5XKE5 535 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 E4F1Q66K89 784 aaPredicted RBP6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 CIAPIN1Q6FI81 312 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 FAM160B2Q86V87 743 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 TMEM139Q8IV31 216 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 SLFN12Q8IYM2 578 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 C17orf53Q8N3J3 647 aaPredicted RBP6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 SAMD3Q8N6K7 520 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 TC2NQ8N9U0 490 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 NELFBQ8WX92 580 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 SLC10A4Q96EP9 437 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 FAM20AQ96MK3 541 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 PNMA5Q96PV4 448 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 PANX2Q96RD6 677 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 NAA15Q9BXJ9 866 aaKnown RBP6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 MTFR1LQ9H019 292 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 NT5C3AQ9H0P0 336 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 BLZF1Q9H2G9 400 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 THAP9Q9H5L6 903 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 GOPCQ9HD26 462 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 ZNF277Q9NRM2 450 aaPredicted RBP6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 DDX25Q9UHL0 483 aaKnown RBP6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 CDV3Q9UKY7 258 aaKnown RBP6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 PCDHA12Q9UN75 941 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 SBF1O95248 1867 aa6.73□□□□□ -1.33
VIPAS39-204ENST00000553576 A0A1W2PQC6 194 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 BICDL2A1A5D9 508 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 FAM196BA6NMK8 535 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 TCP10L2B9ZVM9 353 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 WNT10BO00744 389 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 PSMA7O14818 248 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 TEX33O43247 280 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 CTIFO43310 598 aaKnown RBP6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 TDP2O95551 362 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 TNNT1P13805 278 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 EEF1GP26641 437 aaKnown RBP6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 SREBF1P36956 1147 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 TNNI2P48788 182 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 COPB1P53618 953 aaKnown RBP6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 STX17P56962 302 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 TRIM14Q14142 442 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 SYCP1Q15431 976 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 PTPN14Q15678 1187 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 UBE2SQ16763 222 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 QPCTQ16769 361 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 SHROOM1Q2M3G4 852 aaPredicted RBP6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 DALRD3Q5D0E6 543 aaKnown RBP6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 CENPPQ6IPU0 288 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 TTI2Q6NXR4 508 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 UNC13DQ70J99 1090 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 LYSMD3Q7Z3D4 306 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 IRF2BP1Q8IU81 584 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 SMYD4Q8IYR2 804 aaPredicted RBP6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 ANKRD20A12PQ8NF67 263 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 ZNF507Q8TCN5 953 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 LARP4BQ92615 738 aaKnown RBP6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 RAD54LQ92698 747 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 CCDC51Q96ER9 411 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 ANO3Q9BYT9 981 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 RANBP17Q9H2T7 1088 aaKnown RBP6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 SH2D4AQ9H788 454 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 VCPKMTQ9H867 229 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 ZBTB21Q9ULJ3 1066 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 PRR12Q9ULL5 1215 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 CD2APQ9Y5K6 639 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 ABCB11O95342 1321 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 KDM3AQ9Y4C1 1321 aa6.72□□□□□ -1.33
VIPAS39-204ENST00000553576 PHIPQ8WWQ0 1821 aa6.71□□□□□ -1.33
VIPAS39-204ENST00000553576 UQCRHLA0A096LP55 91 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 GOLGA6L9A6NEM1 432 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 MYMKA6NI61 221 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 USP17L15C9J2P7 530 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 USP17L13C9JLJ4 530 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 AKR1B15C9JRZ8 316 aaPredicted RBP6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 USP17L11C9JVI0 530 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 USP17L18D6R9N7 530 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 USP17L22D6RA61 530 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 USP17L17D6RBQ6 530 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 USP17L19D6RCP7 530 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 USP17L20D6RJB6 530 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 FZD9O00144 591 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 OPLAHO14841 1288 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 ZSCAN12O43309 604 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 UQCRHP07919 91 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 ASNSP08243 561 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 MUTP22033 750 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 POLD1P28340 1107 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 STAT2P52630 851 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 ARHGAP4P98171 946 aa6.71□□□□□ -1.34
VIPAS39-204ENST00000553576 GHRHRQ02643 423 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms