RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 EPB41L2O43491 1005 aaKnown RBP18.61■□□□□ 0.57
VPS29-207ENST00000549970 AMHP03971 560 aa18.61■□□□□ 0.57
VPS29-207ENST00000549970 PDIA3P30101 505 aaKnown RBP18.61■□□□□ 0.57
VPS29-207ENST00000549970 NTRK3Q16288 839 aa18.61■□□□□ 0.57
VPS29-207ENST00000549970 TAF2Q6P1X5 1199 aa18.61■□□□□ 0.57
VPS29-207ENST00000549970 REXO1Q8N1G1 1221 aaKnown RBP18.61■□□□□ 0.57
VPS29-207ENST00000549970 RAD9AQ99638 391 aa18.61■□□□□ 0.57
VPS29-207ENST00000549970 NCOA5Q9HCD5 579 aaKnown RBP18.61■□□□□ 0.57
VPS29-207ENST00000549970 ZSWIM6Q9HCJ5 1215 aa18.61■□□□□ 0.57
VPS29-207ENST00000549970 TRPC6Q9Y210 931 aa18.61■□□□□ 0.57
VPS29-207ENST00000549970 PRRC2BQ5JSZ5 2229 aaKnown RBP18.6■□□□□ 0.57
VPS29-207ENST00000549970 FAM86B1E9PN63 330 aa18.6■□□□□ 0.57
VPS29-207ENST00000549970 GTPBP6O43824 516 aaPredicted RBP18.6■□□□□ 0.57
VPS29-207ENST00000549970 FAM86B2P0C5J1 330 aa18.6■□□□□ 0.57
VPS29-207ENST00000549970 INSRRP14616 1297 aa18.6■□□□□ 0.57
VPS29-207ENST00000549970 MKRN4PQ13434 485 aaPredicted RBP18.6■□□□□ 0.57
VPS29-207ENST00000549970 TOB2Q14106 344 aaPredicted RBP18.6■□□□□ 0.57
VPS29-207ENST00000549970 FAM26DQ5JW98 314 aa18.6■□□□□ 0.57
VPS29-207ENST00000549970 PLA2G4DQ86XP0 818 aa18.6■□□□□ 0.57
VPS29-207ENST00000549970 RASGRP4Q8TDF6 673 aa18.6■□□□□ 0.57
VPS29-207ENST00000549970 ZBTB10Q96DT7 871 aa18.6■□□□□ 0.57
VPS29-207ENST00000549970 UIMC1Q96RL1 719 aa18.6■□□□□ 0.57
VPS29-207ENST00000549970 RNF26Q9BY78 433 aaPredicted RBP18.6■□□□□ 0.57
VPS29-207ENST00000549970 CYP46A1Q9Y6A2 500 aa18.6■□□□□ 0.57
VPS29-207ENST00000549970 MBLAC1A4D2B0 266 aaPredicted RBP18.59■□□□□ 0.57
VPS29-207ENST00000549970 CHRNA1P02708 482 aa18.59■□□□□ 0.57
VPS29-207ENST00000549970 IFNAR1P17181 557 aa18.59■□□□□ 0.57
VPS29-207ENST00000549970 GNA11P29992 359 aa18.59■□□□□ 0.57
VPS29-207ENST00000549970 STAT5BP51692 787 aa18.59■□□□□ 0.57
VPS29-207ENST00000549970 EVCP57679 992 aa18.59■□□□□ 0.57
VPS29-207ENST00000549970 MARCH8Q5T0T0 291 aa18.59■□□□□ 0.57
VPS29-207ENST00000549970 KRT40Q6A162 431 aa18.59■□□□□ 0.57
VPS29-207ENST00000549970 NIPA1Q7RTP0 329 aa18.59■□□□□ 0.57
VPS29-207ENST00000549970 RSPH3Q86UC2 560 aa18.59■□□□□ 0.57
VPS29-207ENST00000549970 CCDC148Q8NFR7 591 aa18.59■□□□□ 0.57
VPS29-207ENST00000549970 DNAJB3Q8WWF6 145 aa18.59■□□□□ 0.57
VPS29-207ENST00000549970 LARP6Q9BRS8 491 aaKnown RBP18.59■□□□□ 0.57
VPS29-207ENST00000549970 IFIH1Q9BYX4 1025 aaKnown RBP18.59■□□□□ 0.57
VPS29-207ENST00000549970 UPF3BQ9BZI7 483 aaKnown RBP18.59■□□□□ 0.57
VPS29-207ENST00000549970 VPS54Q9P1Q0 977 aa18.59■□□□□ 0.57
VPS29-207ENST00000549970 THEGQ9P2T0 379 aa18.59■□□□□ 0.57
VPS29-207ENST00000549970 MTUS1Q9ULD2 1270 aa18.59■□□□□ 0.57
VPS29-207ENST00000549970 MTCH2Q9Y6C9 303 aa18.59■□□□□ 0.57
VPS29-207ENST00000549970 XIRP2A4UGR9 3374 aa18.59■□□□□ 0.57
VPS29-207ENST00000549970 IGLV3-22A0A075B6J6 115 aa18.58■□□□□ 0.56
VPS29-207ENST00000549970 LINC01553A4QN01 128 aa18.58■□□□□ 0.56
VPS29-207ENST00000549970 RRN3P2A6NIE6 340 aa18.58■□□□□ 0.56
VPS29-207ENST00000549970 CCNE2O96020 404 aa18.58■□□□□ 0.56
VPS29-207ENST00000549970 CYP3A4P08684 503 aa18.58■□□□□ 0.56
VPS29-207ENST00000549970 GHRP10912 638 aa18.58■□□□□ 0.56
VPS29-207ENST00000549970 PLCB4Q15147 1175 aa18.58■□□□□ 0.56
VPS29-207ENST00000549970 MCTP2Q6DN12 878 aa18.58■□□□□ 0.56
VPS29-207ENST00000549970 RPAINQ86UA6 219 aa18.58■□□□□ 0.56
VPS29-207ENST00000549970 CRYGNQ8WXF5 182 aa18.58■□□□□ 0.56
VPS29-207ENST00000549970 FAM49AQ9H0Q0 323 aaPredicted RBP18.58■□□□□ 0.56
VPS29-207ENST00000549970 PPP4R2Q9NY27 417 aa18.58■□□□□ 0.56
VPS29-207ENST00000549970 SIP14410 1827 aa18.58■□□□□ 0.56
VPS29-207ENST00000549970 COL4A4P53420 1690 aaPredicted RBP18.57■□□□□ 0.56
VPS29-207ENST00000549970 BACH1O14867 736 aa18.57■□□□□ 0.56
VPS29-207ENST00000549970 UPP2O95045 317 aa18.57■□□□□ 0.56
VPS29-207ENST00000549970 ATG7O95352 703 aa18.57■□□□□ 0.56
VPS29-207ENST00000549970 MGAT3Q09327 533 aa18.57■□□□□ 0.56
VPS29-207ENST00000549970 GRB10Q13322 594 aa18.57■□□□□ 0.56
VPS29-207ENST00000549970 SKIV2LQ15477 1246 aaKnown RBP18.57■□□□□ 0.56
VPS29-207ENST00000549970 TJAP1Q5JTD0 557 aa18.57■□□□□ 0.56
VPS29-207ENST00000549970 PLPPR4Q7Z2D5 763 aa18.57■□□□□ 0.56
VPS29-207ENST00000549970 BICD2Q8TD16 824 aa18.57■□□□□ 0.56
VPS29-207ENST00000549970 GDPD5Q8WTR4 605 aa18.57■□□□□ 0.56
VPS29-207ENST00000549970 TRAPPC12Q8WVT3 735 aa18.57■□□□□ 0.56
VPS29-207ENST00000549970 APBB2Q92870 758 aa18.57■□□□□ 0.56
VPS29-207ENST00000549970 TNPO1Q92973 898 aaKnown RBP18.57■□□□□ 0.56
VPS29-207ENST00000549970 TGS1Q96RS0 853 aaKnown RBP18.57■□□□□ 0.56
VPS29-207ENST00000549970 INSL6Q9Y581 213 aa18.57■□□□□ 0.56
VPS29-207ENST00000549970 CDY2AQ9Y6F7 541 aa18.57■□□□□ 0.56
VPS29-207ENST00000549970 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.56■□□□□ 0.56
VPS29-207ENST00000549970 POTEB3A0JP26 581 aa18.56■□□□□ 0.56
VPS29-207ENST00000549970 IPO5O00410 1097 aaKnown RBP18.56■□□□□ 0.56
VPS29-207ENST00000549970 POU3F3P20264 500 aaPredicted RBP18.56■□□□□ 0.56
VPS29-207ENST00000549970 SETQ01105 290 aaPredicted RBP18.56■□□□□ 0.56
VPS29-207ENST00000549970 STK3Q13188 491 aa18.56■□□□□ 0.56
VPS29-207ENST00000549970 POTEBQ6S5H4 581 aa18.56■□□□□ 0.56
VPS29-207ENST00000549970 TRIM22Q8IYM9 498 aa18.56■□□□□ 0.56
VPS29-207ENST00000549970 ATXN2LQ8WWM7 1075 aaKnown RBP18.56■□□□□ 0.56
VPS29-207ENST00000549970 ZNF577Q9BSK1 485 aa18.56■□□□□ 0.56
VPS29-207ENST00000549970 TM6SF1Q9BZW5 370 aa18.56■□□□□ 0.56
VPS29-207ENST00000549970 TSPYL2Q9H2G4 693 aaPredicted RBP18.56■□□□□ 0.56
VPS29-207ENST00000549970 CPLX1O14810 134 aa18.55■□□□□ 0.56
VPS29-207ENST00000549970 DHX15O43143 795 aaKnown RBP18.55■□□□□ 0.56
VPS29-207ENST00000549970 LPXNO60711 386 aa18.55■□□□□ 0.56
VPS29-207ENST00000549970 NLRP5P59047 1200 aa18.55■□□□□ 0.56
VPS29-207ENST00000549970 ERVK-21P61565 698 aa18.55■□□□□ 0.56
VPS29-207ENST00000549970 MRPS6P82932 125 aaKnown RBP18.55■□□□□ 0.56
VPS29-207ENST00000549970 HTRA4P83105 476 aaPredicted RBP18.55■□□□□ 0.56
VPS29-207ENST00000549970 SSRP1Q08945 709 aaKnown RBP18.55■□□□□ 0.56
VPS29-207ENST00000549970 TMEM62Q0P6H9 643 aa18.55■□□□□ 0.56
VPS29-207ENST00000549970 LPIN1Q14693 890 aa18.55■□□□□ 0.56
VPS29-207ENST00000549970 PRR16Q569H4 304 aa18.55■□□□□ 0.56
VPS29-207ENST00000549970 FAM160B1Q5W0V3 765 aa18.55■□□□□ 0.56
VPS29-207ENST00000549970 ABHD15Q6UXT9 468 aa18.55■□□□□ 0.56
VPS29-207ENST00000549970 CCDC60Q8IWA6 550 aaPredicted RBP18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms