RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 PCDHA12Q9UN75 941 aa16.31■□□□□ 0.2
CPSF1-206ENST00000531480 CEP290O15078 2479 aa16.31■□□□□ 0.2
CPSF1-206ENST00000531480 EML1O00423 815 aa16.3■□□□□ 0.2
CPSF1-206ENST00000531480 BRD1O95696 1058 aa16.3■□□□□ 0.2
CPSF1-206ENST00000531480 ATP4AP20648 1035 aa16.3■□□□□ 0.2
CPSF1-206ENST00000531480 STAT5BP51692 787 aa16.3■□□□□ 0.2
CPSF1-206ENST00000531480 PTGDRQ13258 359 aa16.3■□□□□ 0.2
CPSF1-206ENST00000531480 HABP4Q5JVS0 413 aaKnown RBP16.3■□□□□ 0.2
CPSF1-206ENST00000531480 SPRYD3Q8NCJ5 442 aa16.3■□□□□ 0.2
CPSF1-206ENST00000531480 RNPEPQ9H4A4 650 aa16.3■□□□□ 0.2
CPSF1-206ENST00000531480 AZI2Q9H6S1 392 aa16.3■□□□□ 0.2
CPSF1-206ENST00000531480 TCEAL9Q9UHQ7 104 aa16.3■□□□□ 0.2
CPSF1-206ENST00000531480 ZDHHC9Q9Y397 364 aa16.3■□□□□ 0.2
CPSF1-206ENST00000531480 LTBP2Q14767 1821 aa16.29■□□□□ 0.2
CPSF1-206ENST00000531480 BMP15O95972 392 aa16.29■□□□□ 0.2
CPSF1-206ENST00000531480 F13A1P00488 732 aa16.29■□□□□ 0.2
CPSF1-206ENST00000531480 FXR2P51116 673 aaKnown RBP eCLIP16.29■□□□□ 0.22e-6■■■□□ 15.4
CPSF1-206ENST00000531480 TLE2Q04725 743 aa16.29■□□□□ 0.2
CPSF1-206ENST00000531480 FAAP100Q0VG06 881 aa16.29■□□□□ 0.2
CPSF1-206ENST00000531480 EPHA7Q15375 998 aa16.29■□□□□ 0.2
CPSF1-206ENST00000531480 UTP14CQ5TAP6 766 aaKnown RBP16.29■□□□□ 0.2
CPSF1-206ENST00000531480 FAM160B1Q5W0V3 765 aa16.29■□□□□ 0.2
CPSF1-206ENST00000531480 ARL6IP4Q66PJ3 421 aaKnown RBP16.29■□□□□ 0.2
CPSF1-206ENST00000531480 SWSAP1Q6NVH7 229 aa16.29■□□□□ 0.2
CPSF1-206ENST00000531480 MIER3Q7Z3K6 550 aa16.29■□□□□ 0.2
CPSF1-206ENST00000531480 VTI1AQ96AJ9 217 aa16.29■□□□□ 0.2
CPSF1-206ENST00000531480 ZNF302Q9NR11 478 aa16.29■□□□□ 0.2
CPSF1-206ENST00000531480 HDAC6Q9UBN7 1215 aa16.29■□□□□ 0.2
CPSF1-206ENST00000531480 ZNF862O60290 1169 aa16.28■□□□□ 0.2
CPSF1-206ENST00000531480 B4GALT4O60513 344 aa16.28■□□□□ 0.2
CPSF1-206ENST00000531480 STBD1O95210 358 aa16.28■□□□□ 0.2
CPSF1-206ENST00000531480 TXKP42681 527 aa16.28■□□□□ 0.2
CPSF1-206ENST00000531480 HIC1Q14526 733 aa16.28■□□□□ 0.2
CPSF1-206ENST00000531480 PDIA5Q14554 519 aa16.28■□□□□ 0.2
CPSF1-206ENST00000531480 PLCB4Q15147 1175 aa16.28■□□□□ 0.2
CPSF1-206ENST00000531480 PTPAQ15257 358 aa16.28■□□□□ 0.2
CPSF1-206ENST00000531480 IGSF22Q8N9C0 903 aa16.28■□□□□ 0.2
CPSF1-206ENST00000531480 ATP8B4Q8TF62 1192 aa16.28■□□□□ 0.2
CPSF1-206ENST00000531480 GLG1Q92896 1179 aa16.28■□□□□ 0.2
CPSF1-206ENST00000531480 HSD17B14Q9BPX1 270 aa16.28■□□□□ 0.2
CPSF1-206ENST00000531480 TBX21Q9UL17 535 aa16.28■□□□□ 0.2
CPSF1-206ENST00000531480 COLQQ9Y215 455 aaPredicted RBP16.28■□□□□ 0.2
CPSF1-206ENST00000531480 NRCAMQ92823 1304 aa16.27■□□□□ 0.2
CPSF1-206ENST00000531480 MBLAC1A4D2B0 266 aaPredicted RBP16.27■□□□□ 0.2
CPSF1-206ENST00000531480 DCDC2CA8MYV0 355 aa16.27■□□□□ 0.2
CPSF1-206ENST00000531480 CHMP2AO43633 222 aa16.27■□□□□ 0.2
CPSF1-206ENST00000531480 P4HBP07237 508 aaKnown RBP16.27■□□□□ 0.2
CPSF1-206ENST00000531480 SMIM10L2AP0DMW4 78 aa16.27■□□□□ 0.2
CPSF1-206ENST00000531480 SMIM10L2BP0DMW5 78 aa16.27■□□□□ 0.2
CPSF1-206ENST00000531480 IL17AQ16552 155 aa16.27■□□□□ 0.2
CPSF1-206ENST00000531480 UGCGQ16739 394 aa16.27■□□□□ 0.2
CPSF1-206ENST00000531480 GDF6Q6KF10 455 aaPredicted RBP16.27■□□□□ 0.2
CPSF1-206ENST00000531480 FAM173BQ6P4H8 233 aa16.27■□□□□ 0.2
CPSF1-206ENST00000531480 CHRDL2Q6WN34 429 aa16.27■□□□□ 0.2
CPSF1-206ENST00000531480 C7orf31Q8N865 590 aa16.27■□□□□ 0.2
CPSF1-206ENST00000531480 BBXQ8WY36 941 aaPredicted RBP16.27■□□□□ 0.2
CPSF1-206ENST00000531480 PDLIM7Q9NR12 457 aa16.27■□□□□ 0.2
CPSF1-206ENST00000531480 GABBR1Q9UBS5 961 aa16.27■□□□□ 0.2
CPSF1-206ENST00000531480 ATP11BQ9Y2G3 1177 aa16.27■□□□□ 0.2
CPSF1-206ENST00000531480 SAMM50Q9Y512 469 aa16.27■□□□□ 0.2
CPSF1-206ENST00000531480 POTEB3A0JP26 581 aa16.26■□□□□ 0.19
CPSF1-206ENST00000531480 ZBTB42B2RXF5 422 aa16.26■□□□□ 0.19
CPSF1-206ENST00000531480 BACH1O14867 736 aa16.26■□□□□ 0.19
CPSF1-206ENST00000531480 KIAA0355O15063 1070 aa16.26■□□□□ 0.19
CPSF1-206ENST00000531480 MARCH6O60337 910 aa16.26■□□□□ 0.19
CPSF1-206ENST00000531480 HBP1O60381 514 aa16.26■□□□□ 0.19
CPSF1-206ENST00000531480 EVI5O60447 810 aa16.26■□□□□ 0.19
CPSF1-206ENST00000531480 PQBP1O60828 265 aaKnown RBP16.26■□□□□ 0.19
CPSF1-206ENST00000531480 LYPLA2O95372 231 aa16.26■□□□□ 0.19
CPSF1-206ENST00000531480 CLTBP09497 229 aa16.26■□□□□ 0.19
CPSF1-206ENST00000531480 NASPP49321 788 aaPredicted RBP16.26■□□□□ 0.19
CPSF1-206ENST00000531480 PSMC5P62195 406 aa16.26■□□□□ 0.19
CPSF1-206ENST00000531480 RBL2Q08999 1139 aa16.26■□□□□ 0.19
CPSF1-206ENST00000531480 SF3A1Q15459 793 aaKnown RBP16.26■□□□□ 0.19
CPSF1-206ENST00000531480 MARCH8Q5T0T0 291 aa16.26■□□□□ 0.19
CPSF1-206ENST00000531480 PDXDC2PQ6P474 469 aa16.26■□□□□ 0.19
CPSF1-206ENST00000531480 POTEBQ6S5H4 581 aa16.26■□□□□ 0.19
CPSF1-206ENST00000531480 NEK9Q8TD19 979 aa16.26■□□□□ 0.19
CPSF1-206ENST00000531480 LMBR1Q8WVP7 490 aa16.26■□□□□ 0.19
CPSF1-206ENST00000531480 TNPO1Q92973 898 aaKnown RBP16.26■□□□□ 0.19
CPSF1-206ENST00000531480 ATP6V0A1Q93050 837 aa16.26■□□□□ 0.19
CPSF1-206ENST00000531480 FAM167AQ96KS9 214 aa16.26■□□□□ 0.19
CPSF1-206ENST00000531480 TRPV6Q9H1D0 765 aa16.26■□□□□ 0.19
CPSF1-206ENST00000531480 TRMT13Q9NUP7 481 aaKnown RBP16.26■□□□□ 0.19
CPSF1-206ENST00000531480 CEP131Q9UPN4 1083 aa16.26■□□□□ 0.19
CPSF1-206ENST00000531480 ARID2Q68CP9 1835 aa16.26■□□□□ 0.19
CPSF1-206ENST00000531480 COL1A2P08123 1366 aa16.26■□□□□ 0.19
CPSF1-206ENST00000531480 POTEMA6NI47 508 aa16.25■□□□□ 0.19
CPSF1-206ENST00000531480 TLR3O15455 904 aaKnown RBP16.25■□□□□ 0.19
CPSF1-206ENST00000531480 SLITRK3O94933 977 aa16.25■□□□□ 0.19
CPSF1-206ENST00000531480 MARK3P27448 753 aa16.25■□□□□ 0.19
CPSF1-206ENST00000531480 TECP42680 631 aa16.25■□□□□ 0.19
CPSF1-206ENST00000531480 QARSP47897 775 aaKnown RBP16.25■□□□□ 0.19
CPSF1-206ENST00000531480 ATL3Q6DD88 541 aa16.25■□□□□ 0.19
CPSF1-206ENST00000531480 SERINC5Q86VE9 423 aa16.25■□□□□ 0.19
CPSF1-206ENST00000531480 C4orf19Q8IY42 314 aa16.25■□□□□ 0.19
CPSF1-206ENST00000531480 USP28Q96RU2 1077 aa16.25■□□□□ 0.19
CPSF1-206ENST00000531480 CEP89Q96ST8 783 aa16.25■□□□□ 0.19
CPSF1-206ENST00000531480 NIFKQ9BYG3 293 aaKnown RBP16.25■□□□□ 0.19
CPSF1-206ENST00000531480 WRAP73Q9P2S5 460 aaPredicted RBP16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms