RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 SLC9A2Q9UBY0 812 aa12.99□□□□□ -0.33
VPS28-214ENST00000531032 RAPGEFL1Q9UHV5 662 aa12.99□□□□□ -0.33
VPS28-214ENST00000531032 TTC3P53804 2025 aa12.98□□□□□ -0.33
VPS28-214ENST00000531032 ATG2AQ2TAZ0 1938 aa12.98□□□□□ -0.33
VPS28-214ENST00000531032 NFASCO94856 1347 aa12.98□□□□□ -0.33
VPS28-214ENST00000531032 ADGRA3Q8IWK6 1321 aa12.98□□□□□ -0.33
VPS28-214ENST00000531032 RRN3P2A6NIE6 340 aa12.98□□□□□ -0.33
VPS28-214ENST00000531032 C5orf67F2Z3F1 127 aa12.98□□□□□ -0.33
VPS28-214ENST00000531032 hCG_1984214I3L0E3 225 aa12.98□□□□□ -0.33
VPS28-214ENST00000531032 KCNA5P22460 613 aa12.98□□□□□ -0.33
VPS28-214ENST00000531032 NAPAP54920 295 aa12.98□□□□□ -0.33
VPS28-214ENST00000531032 MRPS6P82932 125 aaKnown RBP12.98□□□□□ -0.33
VPS28-214ENST00000531032 EXOSC10Q01780 885 aaKnown RBP12.98□□□□□ -0.33
VPS28-214ENST00000531032 COL19A1Q14993 1142 aa12.98□□□□□ -0.33
VPS28-214ENST00000531032 TSGA10IPQ3SY00 556 aa12.98□□□□□ -0.33
VPS28-214ENST00000531032 TSHZ1Q6ZSZ6 1077 aa12.98□□□□□ -0.33
VPS28-214ENST00000531032 FIBCD1Q8N539 461 aa12.98□□□□□ -0.33
VPS28-214ENST00000531032 ZNF713Q8N859 430 aaPredicted RBP12.98□□□□□ -0.33
VPS28-214ENST00000531032 BANK1Q8NDB2 785 aa12.98□□□□□ -0.33
VPS28-214ENST00000531032 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.98□□□□□ -0.33
VPS28-214ENST00000531032 CYP2W1Q8TAV3 490 aa12.98□□□□□ -0.33
VPS28-214ENST00000531032 EPHX3Q9H6B9 360 aa12.98□□□□□ -0.33
VPS28-214ENST00000531032 AZI2Q9H6S1 392 aa12.98□□□□□ -0.33
VPS28-214ENST00000531032 BRPF3Q9ULD4 1205 aa12.98□□□□□ -0.33
VPS28-214ENST00000531032 CDY2AQ9Y6F7 541 aa12.98□□□□□ -0.33
VPS28-214ENST00000531032 ENPP3O14638 875 aa12.97□□□□□ -0.33
VPS28-214ENST00000531032 ZBTB43O43298 467 aa12.97□□□□□ -0.33
VPS28-214ENST00000531032 FOSP01100 380 aaPredicted RBP12.97□□□□□ -0.33
VPS28-214ENST00000531032 RB1P06400 928 aa12.97□□□□□ -0.33
VPS28-214ENST00000531032 INSRRP14616 1297 aa12.97□□□□□ -0.33
VPS28-214ENST00000531032 ADCY7P51828 1080 aa12.97□□□□□ -0.33
VPS28-214ENST00000531032 ACTR2P61160 394 aa12.97□□□□□ -0.33
VPS28-214ENST00000531032 IGBP1P78318 339 aa12.97□□□□□ -0.33
VPS28-214ENST00000531032 RTN1Q16799 776 aa12.97□□□□□ -0.33
VPS28-214ENST00000531032 CEP55Q53EZ4 464 aa12.97□□□□□ -0.33
VPS28-214ENST00000531032 TCEAL5Q5H9L2 206 aa12.97□□□□□ -0.33
VPS28-214ENST00000531032 DHX32Q7L7V1 743 aaKnown RBP12.97□□□□□ -0.33
VPS28-214ENST00000531032 PLPPR4Q7Z2D5 763 aa12.97□□□□□ -0.33
VPS28-214ENST00000531032 NEK9Q8TD19 979 aa12.97□□□□□ -0.33
VPS28-214ENST00000531032 KHSRPQ92945 711 aaKnown RBP eCLIP12.97□□□□□ -0.33
VPS28-214ENST00000531032 TNPO1Q92973 898 aaKnown RBP12.97□□□□□ -0.33
VPS28-214ENST00000531032 CLP1Q92989 425 aaKnown RBP12.97□□□□□ -0.33
VPS28-214ENST00000531032 ZNF689Q96CS4 500 aaPredicted RBP12.97□□□□□ -0.33
VPS28-214ENST00000531032 ZBTB10Q96DT7 871 aa12.97□□□□□ -0.33
VPS28-214ENST00000531032 TCEANC2Q96MN5 208 aa12.97□□□□□ -0.33
VPS28-214ENST00000531032 SDF4Q9BRK5 362 aa12.97□□□□□ -0.33
VPS28-214ENST00000531032 ANO3Q9BYT9 981 aa12.97□□□□□ -0.33
VPS28-214ENST00000531032 NSUN3Q9H649 340 aaKnown RBP12.97□□□□□ -0.33
VPS28-214ENST00000531032 AGO3Q9H9G7 860 aaKnown RBP12.97□□□□□ -0.33
VPS28-214ENST00000531032 CD320Q9NPF0 282 aa12.97□□□□□ -0.33
VPS28-214ENST00000531032 BARHL2Q9NY43 387 aa12.97□□□□□ -0.33
VPS28-214ENST00000531032 RWDD3Q9Y3V2 267 aa12.97□□□□□ -0.33
VPS28-214ENST00000531032 SQORQ9Y6N5 450 aa12.97□□□□□ -0.33
VPS28-214ENST00000531032 STXBP3O00186 592 aa12.96□□□□□ -0.33
VPS28-214ENST00000531032 MEIS1O00470 390 aa12.96□□□□□ -0.33
VPS28-214ENST00000531032 ATG7O95352 703 aa12.96□□□□□ -0.33
VPS28-214ENST00000531032 ARP10275 920 aa12.96□□□□□ -0.33
VPS28-214ENST00000531032 CTNNB1P35222 781 aa12.96□□□□□ -0.33
VPS28-214ENST00000531032 BMPR1AP36894 532 aa12.96□□□□□ -0.33
VPS28-214ENST00000531032 SREBF1P36956 1147 aa12.96□□□□□ -0.33
VPS28-214ENST00000531032 CLK2P49760 499 aaKnown RBP12.96□□□□□ -0.33
VPS28-214ENST00000531032 RCAN1P53805 252 aa12.96□□□□□ -0.33
VPS28-214ENST00000531032 ITGB3BPQ13352 177 aaPredicted RBP12.96□□□□□ -0.33
VPS28-214ENST00000531032 AP3B2Q13367 1082 aa12.96□□□□□ -0.33
VPS28-214ENST00000531032 PLCB4Q15147 1175 aa12.96□□□□□ -0.33
VPS28-214ENST00000531032 PUS10Q3MIT2 529 aaKnown RBP12.96□□□□□ -0.33
VPS28-214ENST00000531032 ADCK5Q3MIX3 580 aa12.96□□□□□ -0.33
VPS28-214ENST00000531032 IER5Q5VY09 327 aa12.96□□□□□ -0.33
VPS28-214ENST00000531032 FAM178BQ8IXR5 827 aa12.96□□□□□ -0.33
VPS28-214ENST00000531032 RASEFQ8IZ41 740 aa12.96□□□□□ -0.33
VPS28-214ENST00000531032 CRIPAKQ8N1N5 446 aa12.96□□□□□ -0.33
VPS28-214ENST00000531032 LINC01599Q8WXQ3 324 aa12.96□□□□□ -0.33
VPS28-214ENST00000531032 PABPC5Q96DU9 382 aaKnown RBP12.96□□□□□ -0.33
VPS28-214ENST00000531032 PGBD1Q96JS3 809 aa12.96□□□□□ -0.33
VPS28-214ENST00000531032 C11orf84Q9BUA3 381 aaPredicted RBP12.96□□□□□ -0.33
VPS28-214ENST00000531032 FAM49AQ9H0Q0 323 aaPredicted RBP12.96□□□□□ -0.33
VPS28-214ENST00000531032 GLT8D2Q9H1C3 349 aa12.96□□□□□ -0.33
VPS28-214ENST00000531032 AGO4Q9HCK5 861 aaKnown RBP12.96□□□□□ -0.33
VPS28-214ENST00000531032 FAM217BQ9NTX9 383 aaPredicted RBP12.96□□□□□ -0.33
VPS28-214ENST00000531032 TRPC6Q9Y210 931 aa12.96□□□□□ -0.33
VPS28-214ENST00000531032 PCDHA2Q9Y5H9 948 aa12.96□□□□□ -0.33
VPS28-214ENST00000531032 V9GY48 417 aaPredicted RBP12.96□□□□□ -0.33
VPS28-214ENST00000531032 IGSF9BQ9UPX0 1349 aa12.95□□□□□ -0.34
VPS28-214ENST00000531032 IGKV6D-21A0A0A0MT36 114 aa12.95□□□□□ -0.34
VPS28-214ENST00000531032 SMCO2A6NFE2 343 aa12.95□□□□□ -0.34
VPS28-214ENST00000531032 GRXCR2A6NFK2 248 aa12.95□□□□□ -0.34
VPS28-214ENST00000531032 GOLGA8AA7E2F4 631 aa12.95□□□□□ -0.34
VPS28-214ENST00000531032 GOLGA8BA8MQT2 603 aa12.95□□□□□ -0.34
VPS28-214ENST00000531032 DGKIO75912 1065 aa12.95□□□□□ -0.34
VPS28-214ENST00000531032 IL9P15248 144 aa12.95□□□□□ -0.34
VPS28-214ENST00000531032 CD52P31358 61 aa12.95□□□□□ -0.34
VPS28-214ENST00000531032 SLC26A2P50443 739 aa12.95□□□□□ -0.34
VPS28-214ENST00000531032 STAT5BP51692 787 aa12.95□□□□□ -0.34
VPS28-214ENST00000531032 KRT32Q14532 448 aa12.95□□□□□ -0.34
VPS28-214ENST00000531032 PTCRAQ6ISU1 281 aaPredicted RBP12.95□□□□□ -0.34
VPS28-214ENST00000531032 CENPQQ7L2Z9 268 aaPredicted RBP12.95□□□□□ -0.34
VPS28-214ENST00000531032 NIPA1Q7RTP0 329 aa12.95□□□□□ -0.34
VPS28-214ENST00000531032 SKAP1Q86WV1 359 aa12.95□□□□□ -0.34
VPS28-214ENST00000531032 LRFN3Q9BTN0 628 aa12.95□□□□□ -0.34
VPS28-214ENST00000531032 FTHL17Q9BXU8 183 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms