RNA–Protein interactions for RNA: ENST00000525854.5

HIF3A-209, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 5

Gene HIF3A, Length 767 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-209ENST00000525854 MYOCDQ8IZQ8 938 aa13.24□□□□□ -0.29
HIF3A-209ENST00000525854 SYMPKQ92797 1274 aaKnown RBP13.24□□□□□ -0.29
HIF3A-209ENST00000525854 PHKBQ93100 1093 aa13.24□□□□□ -0.29
HIF3A-209ENST00000525854 COL25A1Q9BXS0 654 aaPredicted RBP13.24□□□□□ -0.29
HIF3A-209ENST00000525854 SLC26A6Q9BXS9 759 aa13.24□□□□□ -0.29
HIF3A-209ENST00000525854 CERS4Q9HA82 394 aa13.24□□□□□ -0.29
HIF3A-209ENST00000525854 PPP4R2Q9NY27 417 aa13.24□□□□□ -0.29
HIF3A-209ENST00000525854 TRPC6Q9Y210 931 aa13.24□□□□□ -0.29
HIF3A-209ENST00000525854 INSL6Q9Y581 213 aa13.24□□□□□ -0.29
HIF3A-209ENST00000525854 FAM86B1E9PN63 330 aa13.23□□□□□ -0.29
HIF3A-209ENST00000525854 CPLX1O14810 134 aa13.23□□□□□ -0.29
HIF3A-209ENST00000525854 FAM86B2P0C5J1 330 aa13.23□□□□□ -0.29
HIF3A-209ENST00000525854 INSRRP14616 1297 aa13.23□□□□□ -0.29
HIF3A-209ENST00000525854 CCT2P78371 535 aaKnown RBP13.23□□□□□ -0.29
HIF3A-209ENST00000525854 MKRN4PQ13434 485 aaPredicted RBP13.23□□□□□ -0.29
HIF3A-209ENST00000525854 FAM160B1Q5W0V3 765 aa13.23□□□□□ -0.29
HIF3A-209ENST00000525854 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.23□□□□□ -0.29
HIF3A-209ENST00000525854 RUFY4Q6ZNE9 571 aa13.23□□□□□ -0.29
HIF3A-209ENST00000525854 MICALL1Q8N3F8 863 aa13.23□□□□□ -0.29
HIF3A-209ENST00000525854 ATXN2LQ8WWM7 1075 aaKnown RBP13.23□□□□□ -0.29
HIF3A-209ENST00000525854 CRYGNQ8WXF5 182 aa13.23□□□□□ -0.29
HIF3A-209ENST00000525854 ZNF274Q96GC6 653 aaPredicted RBP13.23□□□□□ -0.29
HIF3A-209ENST00000525854 PCYT2Q99447 389 aa13.23□□□□□ -0.29
HIF3A-209ENST00000525854 IFIH1Q9BYX4 1025 aaKnown RBP13.23□□□□□ -0.29
HIF3A-209ENST00000525854 SH3GLB2Q9NR46 395 aa13.23□□□□□ -0.29
HIF3A-209ENST00000525854 TBC1D22BQ9NU19 505 aa13.23□□□□□ -0.29
HIF3A-209ENST00000525854 THEGQ9P2T0 379 aa13.23□□□□□ -0.29
HIF3A-209ENST00000525854 GBF1Q92538 1859 aa13.23□□□□□ -0.29
HIF3A-209ENST00000525854 IGLV3-22A0A075B6J6 115 aa13.22□□□□□ -0.29
HIF3A-209ENST00000525854 POTEB3A0JP26 581 aa13.22□□□□□ -0.29
HIF3A-209ENST00000525854 LCHNA4D1U4 455 aa13.22□□□□□ -0.29
HIF3A-209ENST00000525854 IPO5O00410 1097 aaKnown RBP13.22□□□□□ -0.29
HIF3A-209ENST00000525854 BACH1O14867 736 aa13.22□□□□□ -0.29
HIF3A-209ENST00000525854 ARHGEF15O94989 841 aa13.22□□□□□ -0.29
HIF3A-209ENST00000525854 ATG7O95352 703 aa13.22□□□□□ -0.29
HIF3A-209ENST00000525854 CHRNA1P02708 482 aa13.22□□□□□ -0.29
HIF3A-209ENST00000525854 IGBP1P78318 339 aa13.22□□□□□ -0.29
HIF3A-209ENST00000525854 TOB2Q14106 344 aaPredicted RBP13.22□□□□□ -0.29
HIF3A-209ENST00000525854 TJAP1Q5JTD0 557 aa13.22□□□□□ -0.29
HIF3A-209ENST00000525854 MARCH8Q5T0T0 291 aa13.22□□□□□ -0.29
HIF3A-209ENST00000525854 IER5Q5VY09 327 aa13.22□□□□□ -0.29
HIF3A-209ENST00000525854 MIS18BP1Q6P0N0 1132 aa13.22□□□□□ -0.29
HIF3A-209ENST00000525854 FAM117BQ6P1L5 589 aa13.22□□□□□ -0.29
HIF3A-209ENST00000525854 CPLX2Q6PUV4 134 aaKnown RBP13.22□□□□□ -0.29
HIF3A-209ENST00000525854 POTEBQ6S5H4 581 aa13.22□□□□□ -0.29
HIF3A-209ENST00000525854 DNAJB3Q8WWF6 145 aa13.22□□□□□ -0.29
HIF3A-209ENST00000525854 TGS1Q96RS0 853 aaKnown RBP13.22□□□□□ -0.29
HIF3A-209ENST00000525854 NCOA5Q9HCD5 579 aaKnown RBP13.22□□□□□ -0.29
HIF3A-209ENST00000525854 TCEAL9Q9UHQ7 104 aa13.22□□□□□ -0.29
HIF3A-209ENST00000525854 MTCH2Q9Y6C9 303 aa13.22□□□□□ -0.29
HIF3A-209ENST00000525854 DOCK5Q9H7D0 1870 aa13.22□□□□□ -0.29
HIF3A-209ENST00000525854 CHD9Q3L8U1 2897 aa13.22□□□□□ -0.29
HIF3A-209ENST00000525854 IGKV6D-21A0A0A0MT36 114 aa13.21□□□□□ -0.29
HIF3A-209ENST00000525854 LINC01553A4QN01 128 aa13.21□□□□□ -0.29
HIF3A-209ENST00000525854 EPOPA6NHQ4 379 aa13.21□□□□□ -0.29
HIF3A-209ENST00000525854 M0QZ92 97 aa13.21□□□□□ -0.29
HIF3A-209ENST00000525854 DDX39AO00148 427 aaKnown RBP13.21□□□□□ -0.29
HIF3A-209ENST00000525854 RFXAPO00287 272 aa13.21□□□□□ -0.29
HIF3A-209ENST00000525854 CCNE2O96020 404 aa13.21□□□□□ -0.29
HIF3A-209ENST00000525854 NLRP5P59047 1200 aa13.21□□□□□ -0.29
HIF3A-209ENST00000525854 ERVK-21P61565 698 aa13.21□□□□□ -0.29
HIF3A-209ENST00000525854 MRPS6P82932 125 aaKnown RBP13.21□□□□□ -0.29
HIF3A-209ENST00000525854 SSRP1Q08945 709 aaKnown RBP13.21□□□□□ -0.29
HIF3A-209ENST00000525854 PLCB4Q15147 1175 aa13.21□□□□□ -0.29
HIF3A-209ENST00000525854 FAM177A1Q8N128 213 aaPredicted RBP13.21□□□□□ -0.29
HIF3A-209ENST00000525854 TOP1MTQ969P6 601 aa13.21□□□□□ -0.29
HIF3A-209ENST00000525854 ZNF577Q9BSK1 485 aa13.21□□□□□ -0.29
HIF3A-209ENST00000525854 C22orf23Q9BZE7 217 aa13.21□□□□□ -0.29
HIF3A-209ENST00000525854 UPF3BQ9BZI7 483 aaKnown RBP13.21□□□□□ -0.29
HIF3A-209ENST00000525854 PDRG1Q9NUG6 133 aa13.21□□□□□ -0.29
HIF3A-209ENST00000525854 LMCD1Q9NZU5 365 aa13.21□□□□□ -0.29
HIF3A-209ENST00000525854 VPS54Q9P1Q0 977 aa13.21□□□□□ -0.29
HIF3A-209ENST00000525854 PCDHA2Q9Y5H9 948 aa13.21□□□□□ -0.29
HIF3A-209ENST00000525854 DHX15O43143 795 aaKnown RBP13.2□□□□□ -0.3
HIF3A-209ENST00000525854 HBP1O60381 514 aa13.2□□□□□ -0.3
HIF3A-209ENST00000525854 EIF5BO60841 1220 aaKnown RBP13.2□□□□□ -0.3
HIF3A-209ENST00000525854 PPFIA3O75145 1194 aa13.2□□□□□ -0.3
HIF3A-209ENST00000525854 DEXIO95424 95 aa13.2□□□□□ -0.3
HIF3A-209ENST00000525854 GHRP10912 638 aa13.2□□□□□ -0.3
HIF3A-209ENST00000525854 CIITAP33076 1130 aa13.2□□□□□ -0.3
HIF3A-209ENST00000525854 USP11P51784 963 aa13.2□□□□□ -0.3
HIF3A-209ENST00000525854 MRPS5P82675 430 aaKnown RBP13.2□□□□□ -0.3
HIF3A-209ENST00000525854 HTRA4P83105 476 aaPredicted RBP13.2□□□□□ -0.3
HIF3A-209ENST00000525854 KRT76Q01546 638 aa13.2□□□□□ -0.3
HIF3A-209ENST00000525854 MGAT3Q09327 533 aa13.2□□□□□ -0.3
HIF3A-209ENST00000525854 GRB10Q13322 594 aa13.2□□□□□ -0.3
HIF3A-209ENST00000525854 LPIN1Q14693 890 aa13.2□□□□□ -0.3
HIF3A-209ENST00000525854 SKIV2LQ15477 1246 aaKnown RBP13.2□□□□□ -0.3
HIF3A-209ENST00000525854 PRR16Q569H4 304 aa13.2□□□□□ -0.3
HIF3A-209ENST00000525854 ZNF746Q6NUN9 644 aaPredicted RBP13.2□□□□□ -0.3
HIF3A-209ENST00000525854 PDXDC2PQ6P474 469 aa13.2□□□□□ -0.3
HIF3A-209ENST00000525854 ABHD15Q6UXT9 468 aa13.2□□□□□ -0.3
HIF3A-209ENST00000525854 TSHZ1Q6ZSZ6 1077 aa13.2□□□□□ -0.3
HIF3A-209ENST00000525854 SMAP1Q8IYB5 467 aaPredicted RBP13.2□□□□□ -0.3
HIF3A-209ENST00000525854 NME8Q8N427 588 aa13.2□□□□□ -0.3
HIF3A-209ENST00000525854 IL27Q8NEV9 243 aa13.2□□□□□ -0.3
HIF3A-209ENST00000525854 YME1L1Q96TA2 773 aa13.2□□□□□ -0.3
HIF3A-209ENST00000525854 FAM49AQ9H0Q0 323 aaPredicted RBP13.2□□□□□ -0.3
HIF3A-209ENST00000525854 PRDM6Q9NQX0 595 aa13.2□□□□□ -0.3
HIF3A-209ENST00000525854 ZNF302Q9NR11 478 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms