RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 RNASE1P07998 156 aaKnown RBP6.14□□□□□ -1.43
CD44-220ENST00000525688 RAC2P15153 192 aa6.14□□□□□ -1.43
CD44-220ENST00000525688 ARL4AP40617 200 aa6.14□□□□□ -1.43
CD44-220ENST00000525688 KIF11P52732 1056 aa6.14□□□□□ -1.43
CD44-220ENST00000525688 ERVFC1P60507 584 aa6.14□□□□□ -1.43
CD44-220ENST00000525688 KLF1Q13351 362 aaPredicted RBP6.14□□□□□ -1.43
CD44-220ENST00000525688 SEC23AQ15436 765 aa6.14□□□□□ -1.43
CD44-220ENST00000525688 SMC5Q8IY18 1101 aa6.14□□□□□ -1.43
CD44-220ENST00000525688 MYLIPQ8WY64 445 aa6.14□□□□□ -1.43
CD44-220ENST00000525688 RELTQ969Z4 430 aa6.14□□□□□ -1.43
CD44-220ENST00000525688 SMAD5Q99717 465 aaKnown RBP6.14□□□□□ -1.43
CD44-220ENST00000525688 CD244Q9BZW8 370 aa6.14□□□□□ -1.43
CD44-220ENST00000525688 AP5M1Q9H0R1 490 aa6.14□□□□□ -1.43
CD44-220ENST00000525688 PCIF1Q9H4Z3 704 aa6.14□□□□□ -1.43
CD44-220ENST00000525688 C19orf44Q9H6X5 657 aa6.14□□□□□ -1.43
CD44-220ENST00000525688 GEMIN8Q9NWZ8 242 aaKnown RBP6.14□□□□□ -1.43
CD44-220ENST00000525688 MYOTQ9UBF9 498 aa6.14□□□□□ -1.43
CD44-220ENST00000525688 CTNND2Q9UQB3 1225 aa6.14□□□□□ -1.43
CD44-220ENST00000525688 TELO2Q9Y4R8 837 aa6.14□□□□□ -1.43
CD44-220ENST00000525688 FAM90A27PA6NNH2 459 aa6.13□□□□□ -1.43
CD44-220ENST00000525688 SLC27A2O14975 620 aa6.13□□□□□ -1.43
CD44-220ENST00000525688 CYBBP04839 570 aa6.13□□□□□ -1.43
CD44-220ENST00000525688 DBHP09172 617 aa6.13□□□□□ -1.43
CD44-220ENST00000525688 PTPN1P18031 435 aaKnown RBP6.13□□□□□ -1.43
CD44-220ENST00000525688 FNTBP49356 437 aa6.13□□□□□ -1.43
CD44-220ENST00000525688 KRT85P78386 507 aa6.13□□□□□ -1.43
CD44-220ENST00000525688 TUSC3Q13454 348 aa6.13□□□□□ -1.43
CD44-220ENST00000525688 PIN1Q13526 163 aaPredicted RBP6.13□□□□□ -1.43
CD44-220ENST00000525688 PLCL1Q15111 1095 aa6.13□□□□□ -1.43
CD44-220ENST00000525688 CPZQ66K79 652 aa6.13□□□□□ -1.43
CD44-220ENST00000525688 SPTY2D1Q68D10 685 aaPredicted RBP6.13□□□□□ -1.43
CD44-220ENST00000525688 PAQR3Q6TCH7 311 aa6.13□□□□□ -1.43
CD44-220ENST00000525688 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.13□□□□□ -1.43
CD44-220ENST00000525688 ZBTB46Q86UZ6 589 aa6.13□□□□□ -1.43
CD44-220ENST00000525688 TTLL11Q8NHH1 800 aa6.13□□□□□ -1.43
CD44-220ENST00000525688 PEX11GQ96HA9 241 aa6.13□□□□□ -1.43
CD44-220ENST00000525688 C16orf92Q96LL3 132 aa6.13□□□□□ -1.43
CD44-220ENST00000525688 C8orf48Q96LL4 319 aa6.13□□□□□ -1.43
CD44-220ENST00000525688 ZDHHC5Q9C0B5 715 aa6.13□□□□□ -1.43
CD44-220ENST00000525688 CDH19Q9H159 772 aa6.13□□□□□ -1.43
CD44-220ENST00000525688 ZMAT4Q9H898 229 aa6.13□□□□□ -1.43
CD44-220ENST00000525688 TOMM22Q9NS69 142 aa6.13□□□□□ -1.43
CD44-220ENST00000525688 NUDT5Q9UKK9 219 aa6.13□□□□□ -1.43
CD44-220ENST00000525688 URB2Q14146 1524 aaKnown RBP6.13□□□□□ -1.43
CD44-220ENST00000525688 TCRBV5S2A0A599 114 aa6.12□□□□□ -1.43
CD44-220ENST00000525688 SHTN1A0MZ66 631 aa6.12□□□□□ -1.43
CD44-220ENST00000525688 FZD9O00144 591 aa6.12□□□□□ -1.43
CD44-220ENST00000525688 BUB1BO60566 1050 aaPredicted RBP6.12□□□□□ -1.43
CD44-220ENST00000525688 PEX14O75381 377 aa6.12□□□□□ -1.43
CD44-220ENST00000525688 ZBTB7AO95365 584 aa6.12□□□□□ -1.43
CD44-220ENST00000525688 C4BPAP04003 597 aaKnown RBP6.12□□□□□ -1.43
CD44-220ENST00000525688 ERVFRD-1P60508 538 aa6.12□□□□□ -1.43
CD44-220ENST00000525688 PPP2R5AQ15172 486 aa6.12□□□□□ -1.43
CD44-220ENST00000525688 CLEC4DQ8WXI8 215 aa6.12□□□□□ -1.43
CD44-220ENST00000525688 HOOK2Q96ED9 719 aa6.12□□□□□ -1.43
CD44-220ENST00000525688 UBA5Q9GZZ9 404 aa6.12□□□□□ -1.43
CD44-220ENST00000525688 TCF7L1Q9HCS4 588 aa6.12□□□□□ -1.43
CD44-220ENST00000525688 GPR160Q9UJ42 338 aa6.12□□□□□ -1.43
CD44-220ENST00000525688 PCDHB4Q9Y5E5 795 aa6.12□□□□□ -1.43
CD44-220ENST00000525688 WASHC2AQ641Q2 1341 aa6.11□□□□□ -1.43
CD44-220ENST00000525688 CCDC194A0A1B0GVG4 234 aa6.11□□□□□ -1.43
CD44-220ENST00000525688 TRIM75PA6NK02 468 aa6.11□□□□□ -1.43
CD44-220ENST00000525688 HMGB1P1B2RPK0 211 aaPredicted RBP6.11□□□□□ -1.43
CD44-220ENST00000525688 ADAMTS4O75173 837 aa6.11□□□□□ -1.43
CD44-220ENST00000525688 ABLIM3O94929 683 aa6.11□□□□□ -1.43
CD44-220ENST00000525688 CFBP00751 764 aa6.11□□□□□ -1.43
CD44-220ENST00000525688 RBP3P10745 1247 aa6.11□□□□□ -1.43
CD44-220ENST00000525688 CD40P25942 277 aa6.11□□□□□ -1.43
CD44-220ENST00000525688 PTX3P26022 381 aaPredicted RBP6.11□□□□□ -1.43
CD44-220ENST00000525688 TRHRP34981 398 aaPredicted RBP6.11□□□□□ -1.43
CD44-220ENST00000525688 HERVK_113P62684 666 aa6.11□□□□□ -1.43
CD44-220ENST00000525688 SLC9A5Q14940 896 aa6.11□□□□□ -1.43
CD44-220ENST00000525688 RALBP1Q15311 655 aa6.11□□□□□ -1.43
CD44-220ENST00000525688 EPHA7Q15375 998 aa6.11□□□□□ -1.43
CD44-220ENST00000525688 PTPN21Q16825 1174 aa6.11□□□□□ -1.43
CD44-220ENST00000525688 ZNF792Q3KQV3 632 aa6.11□□□□□ -1.43
CD44-220ENST00000525688 BTBD8Q5XKL5 378 aa6.11□□□□□ -1.43
CD44-220ENST00000525688 ESRP1Q6NXG1 681 aaKnown RBP6.11□□□□□ -1.43
CD44-220ENST00000525688 FRMD7Q6ZUT3 714 aa6.11□□□□□ -1.43
CD44-220ENST00000525688 APBB1IPQ7Z5R6 666 aaPredicted RBP6.11□□□□□ -1.43
CD44-220ENST00000525688 TP53INP2Q8IXH6 220 aa6.11□□□□□ -1.43
CD44-220ENST00000525688 TSR2Q969E8 191 aaKnown RBP6.11□□□□□ -1.43
CD44-220ENST00000525688 FUBP3Q96I24 572 aaKnown RBP eCLIP6.11□□□□□ -1.43
CD44-220ENST00000525688 CCDC136Q96JN2 1154 aa6.11□□□□□ -1.43
CD44-220ENST00000525688 ORAI2Q96SN7 254 aa6.11□□□□□ -1.43
CD44-220ENST00000525688 RC3H2Q9HBD1 1191 aaKnown RBP6.11□□□□□ -1.43
CD44-220ENST00000525688 AASDHPPTQ9NRN7 309 aa6.11□□□□□ -1.43
CD44-220ENST00000525688 TOPORSQ9NS56 1045 aaPredicted RBP6.11□□□□□ -1.43
CD44-220ENST00000525688 C14orf119Q9NWQ9 140 aa6.11□□□□□ -1.43
CD44-220ENST00000525688 ZIM2Q9NZV7 527 aa6.11□□□□□ -1.43
CD44-220ENST00000525688 USP36Q9P275 1121 aaKnown RBP6.11□□□□□ -1.43
CD44-220ENST00000525688 PALD1Q9ULE6 856 aa6.11□□□□□ -1.43
CD44-220ENST00000525688 YBX2Q9Y2T7 364 aaKnown RBP6.11□□□□□ -1.43
CD44-220ENST00000525688 NOC2LQ9Y3T9 749 aaKnown RBP6.11□□□□□ -1.43
CD44-220ENST00000525688 ACOT7O00154 380 aa6.1□□□□□ -1.43
CD44-220ENST00000525688 RFPL1O75677 317 aa6.1□□□□□ -1.43
CD44-220ENST00000525688 LTFP02788 710 aa6.1□□□□□ -1.43
CD44-220ENST00000525688 IARSP41252 1262 aaKnown RBP6.1□□□□□ -1.43
CD44-220ENST00000525688 ADCY1Q08828 1119 aa6.1□□□□□ -1.43
CD44-220ENST00000525688 NR1I3Q14994 352 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms