RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 SMOC1Q9H4F8 434 aa9.64□□□□□ -0.87
LSM1-202ENST00000520286 ARNT2Q9HBZ2 717 aa9.64□□□□□ -0.87
LSM1-202ENST00000520286 STK17AQ9UEE5 414 aa9.64□□□□□ -0.87
LSM1-202ENST00000520286 SLC5A6Q9Y289 635 aa9.64□□□□□ -0.87
LSM1-202ENST00000520286 RIPOR2Q9Y4F9 1068 aa9.64□□□□□ -0.87
LSM1-202ENST00000520286 A0A1W2PQJ5 194 aa9.63□□□□□ -0.87
LSM1-202ENST00000520286 KLHL33A6NCF5 533 aa9.63□□□□□ -0.87
LSM1-202ENST00000520286 MYL1P05976 194 aa9.63□□□□□ -0.87
LSM1-202ENST00000520286 CD8BP10966 210 aa9.63□□□□□ -0.87
LSM1-202ENST00000520286 SLC6A11P48066 632 aa9.63□□□□□ -0.87
LSM1-202ENST00000520286 EPHA5P54756 1037 aa9.63□□□□□ -0.87
LSM1-202ENST00000520286 KIR3DS1Q14943 382 aa9.63□□□□□ -0.87
LSM1-202ENST00000520286 CLUL1Q15846 466 aa9.63□□□□□ -0.87
LSM1-202ENST00000520286 SLC4A10Q6U841 1118 aa9.63□□□□□ -0.87
LSM1-202ENST00000520286 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.63□□□□□ -0.87
LSM1-202ENST00000520286 CABP7Q86V35 215 aa9.63□□□□□ -0.87
LSM1-202ENST00000520286 CERS3Q8IU89 383 aa9.63□□□□□ -0.87
LSM1-202ENST00000520286 SPPL2CQ8IUH8 684 aa9.63□□□□□ -0.87
LSM1-202ENST00000520286 PLCD4Q9BRC7 762 aa9.63□□□□□ -0.87
LSM1-202ENST00000520286 TELO2Q9Y4R8 837 aa9.63□□□□□ -0.87
LSM1-202ENST00000520286 PLEKHD1A6NEE1 506 aa9.62□□□□□ -0.87
LSM1-202ENST00000520286 BUB1BO60566 1050 aaPredicted RBP9.62□□□□□ -0.87
LSM1-202ENST00000520286 TADA3O75528 432 aa9.62□□□□□ -0.87
LSM1-202ENST00000520286 GDF11O95390 407 aa9.62□□□□□ -0.87
LSM1-202ENST00000520286 LTFP02788 710 aa9.62□□□□□ -0.87
LSM1-202ENST00000520286 PTPN1P18031 435 aaKnown RBP9.62□□□□□ -0.87
LSM1-202ENST00000520286 CYP2C19P33261 490 aa9.62□□□□□ -0.87
LSM1-202ENST00000520286 GJA4P35212 333 aa9.62□□□□□ -0.87
LSM1-202ENST00000520286 HK2P52789 917 aa9.62□□□□□ -0.87
LSM1-202ENST00000520286 UBE4AQ14139 1066 aa9.62□□□□□ -0.87
LSM1-202ENST00000520286 BTBD8Q5XKL5 378 aa9.62□□□□□ -0.87
LSM1-202ENST00000520286 CMTR2Q8IYT2 770 aaKnown RBP9.62□□□□□ -0.87
LSM1-202ENST00000520286 OXR1Q8N573 874 aa9.62□□□□□ -0.87
LSM1-202ENST00000520286 PDZD8Q8NEN9 1154 aa9.62□□□□□ -0.87
LSM1-202ENST00000520286 PHOSPHO1Q8TCT1 267 aa9.62□□□□□ -0.87
LSM1-202ENST00000520286 RTF1Q92541 710 aaKnown RBP9.62□□□□□ -0.87
LSM1-202ENST00000520286 HSPBAP1Q96EW2 488 aa9.62□□□□□ -0.87
LSM1-202ENST00000520286 CCM2LQ9NUG4 571 aaPredicted RBP9.62□□□□□ -0.87
LSM1-202ENST00000520286 RIC8BQ9NVN3 520 aa9.62□□□□□ -0.87
LSM1-202ENST00000520286 MYOTQ9UBF9 498 aa9.62□□□□□ -0.87
LSM1-202ENST00000520286 MSRAQ9UJ68 235 aa9.62□□□□□ -0.87
LSM1-202ENST00000520286 INVSQ9Y283 1065 aa9.62□□□□□ -0.87
LSM1-202ENST00000520286 FAM90A27PA6NNH2 459 aa9.61□□□□□ -0.87
LSM1-202ENST00000520286 NOTOA8MTQ0 251 aa9.61□□□□□ -0.87
LSM1-202ENST00000520286 VSTM5A8MXK1 200 aa9.61□□□□□ -0.87
LSM1-202ENST00000520286 SDHAP31040 664 aa9.61□□□□□ -0.87
LSM1-202ENST00000520286 TUSC3Q13454 348 aa9.61□□□□□ -0.87
LSM1-202ENST00000520286 ACAP2Q15057 778 aa9.61□□□□□ -0.87
LSM1-202ENST00000520286 EPHA7Q15375 998 aa9.61□□□□□ -0.87
LSM1-202ENST00000520286 MINDY4Q4G0A6 757 aa9.61□□□□□ -0.87
LSM1-202ENST00000520286 EFCAB2Q5VUJ9 269 aa9.61□□□□□ -0.87
LSM1-202ENST00000520286 BICRALQ6AI39 1079 aa9.61□□□□□ -0.87
LSM1-202ENST00000520286 DGKHQ86XP1 1220 aa9.61□□□□□ -0.87
LSM1-202ENST00000520286 DCP2Q8IU60 420 aaKnown RBP9.61□□□□□ -0.87
LSM1-202ENST00000520286 TGFBRAP1Q8WUH2 860 aa9.61□□□□□ -0.87
LSM1-202ENST00000520286 C16orf92Q96LL3 132 aa9.61□□□□□ -0.87
LSM1-202ENST00000520286 ACAP3Q96P50 834 aa9.61□□□□□ -0.87
LSM1-202ENST00000520286 OBP2AQ9NY56 170 aa9.61□□□□□ -0.87
LSM1-202ENST00000520286 ASH2LQ9UBL3 628 aa9.61□□□□□ -0.87
LSM1-202ENST00000520286 ZBTB21Q9ULJ3 1066 aa9.61□□□□□ -0.87
LSM1-202ENST00000520286 FITM1A5D6W6 292 aa9.6□□□□□ -0.87
LSM1-202ENST00000520286 IL33O95760 270 aa9.6□□□□□ -0.87
LSM1-202ENST00000520286 C4BPAP04003 597 aaKnown RBP9.6□□□□□ -0.87
LSM1-202ENST00000520286 TMEM253P0C7T8 217 aa9.6□□□□□ -0.87
LSM1-202ENST00000520286 GLI4P10075 376 aa9.6□□□□□ -0.87
LSM1-202ENST00000520286 VCAM1P19320 739 aa9.6□□□□□ -0.87
LSM1-202ENST00000520286 FNTBP49356 437 aa9.6□□□□□ -0.87
LSM1-202ENST00000520286 CYP4F8P98187 520 aa9.6□□□□□ -0.87
LSM1-202ENST00000520286 CATSPEREQ5SY80 951 aa9.6□□□□□ -0.87
LSM1-202ENST00000520286 PPP4R4Q6NUP7 873 aa9.6□□□□□ -0.87
LSM1-202ENST00000520286 KSR2Q6VAB6 950 aa9.6□□□□□ -0.87
LSM1-202ENST00000520286 TTLL7Q6ZT98 887 aa9.6□□□□□ -0.87
LSM1-202ENST00000520286 SPRED2Q7Z698 418 aa9.6□□□□□ -0.87
LSM1-202ENST00000520286 SEC14L1Q92503 715 aa9.6□□□□□ -0.87
LSM1-202ENST00000520286 CLIP3Q96DZ5 547 aa9.6□□□□□ -0.87
LSM1-202ENST00000520286 ZNF496Q96IT1 587 aaPredicted RBP9.6□□□□□ -0.87
LSM1-202ENST00000520286 AP5M1Q9H0R1 490 aa9.6□□□□□ -0.87
LSM1-202ENST00000520286 USP36Q9P275 1121 aaKnown RBP9.6□□□□□ -0.87
LSM1-202ENST00000520286 PCDHB4Q9Y5E5 795 aa9.6□□□□□ -0.87
LSM1-202ENST00000520286 FOXP2O15409 715 aa9.59□□□□□ -0.87
LSM1-202ENST00000520286 HTRA3P83110 453 aa9.59□□□□□ -0.87
LSM1-202ENST00000520286 BIRC2Q13490 618 aa9.59□□□□□ -0.87
LSM1-202ENST00000520286 GTF2H3Q13889 308 aa9.59□□□□□ -0.87
LSM1-202ENST00000520286 ZNF574Q6ZN55 896 aaPredicted RBP9.59□□□□□ -0.87
LSM1-202ENST00000520286 TRIM48Q8IWZ4 208 aa9.59□□□□□ -0.87
LSM1-202ENST00000520286 TMEM151AQ8N4L1 468 aa9.59□□□□□ -0.87
LSM1-202ENST00000520286 CCDC120Q96HB5 630 aa9.59□□□□□ -0.87
LSM1-202ENST00000520286 TEKT5Q96M29 485 aa9.59□□□□□ -0.87
LSM1-202ENST00000520286 ORAI2Q96SN7 254 aa9.59□□□□□ -0.87
LSM1-202ENST00000520286 NUP88Q99567 741 aaPredicted RBP9.59□□□□□ -0.87
LSM1-202ENST00000520286 MYH16Q9H6N6 1097 aa9.59□□□□□ -0.87
LSM1-202ENST00000520286 PRDM7Q9NQW5 492 aa9.59□□□□□ -0.87
LSM1-202ENST00000520286 SIT1Q9Y3P8 196 aa9.59□□□□□ -0.87
LSM1-202ENST00000520286 MYO15BQ96JP2 1530 aa9.58□□□□□ -0.88
LSM1-202ENST00000520286 PRAMEF25A6NGN4 478 aa9.58□□□□□ -0.88
LSM1-202ENST00000520286 ADCY1Q08828 1119 aa9.58□□□□□ -0.88
LSM1-202ENST00000520286 HDAC1Q13547 482 aaPredicted RBP9.58□□□□□ -0.88
LSM1-202ENST00000520286 INTS5Q6P9B9 1019 aaKnown RBP9.58□□□□□ -0.88
LSM1-202ENST00000520286 EPM2AIP1Q7L775 607 aaPredicted RBP9.58□□□□□ -0.88
LSM1-202ENST00000520286 NME9Q86XW9 330 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms