RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 GLT1D1Q96MS3 346 aa33.29■■■□□ 2.92
LIMCH1-211ENST00000509638 ZNF302Q9NR11 478 aa33.29■■■□□ 2.92
LIMCH1-211ENST00000509638 GABBR1Q9UBS5 961 aa33.29■■■□□ 2.92
LIMCH1-211ENST00000509638 FBXO2Q9UK22 296 aaPredicted RBP33.29■■■□□ 2.92
LIMCH1-211ENST00000509638 CABYRO75952 493 aa33.28■■■□□ 2.92
LIMCH1-211ENST00000509638 GRIN1Q05586 938 aa33.28■■■□□ 2.92
LIMCH1-211ENST00000509638 UGCGQ16739 394 aa33.28■■■□□ 2.92
LIMCH1-211ENST00000509638 PAWRQ96IZ0 340 aaKnown RBP33.28■■■□□ 2.92
LIMCH1-211ENST00000509638 SMARCAD1Q9H4L7 1026 aa33.28■■■□□ 2.92
LIMCH1-211ENST00000509638 LRWD1Q9UFC0 647 aa33.28■■■□□ 2.92
LIMCH1-211ENST00000509638 H3BRB1 525 aa33.27■■■□□ 2.92
LIMCH1-211ENST00000509638 MARK3P27448 753 aa33.27■■■□□ 2.92
LIMCH1-211ENST00000509638 STAT5BP51692 787 aa33.27■■■□□ 2.92
LIMCH1-211ENST00000509638 CHMP4BP1P59074 171 aa33.27■■■□□ 2.92
LIMCH1-211ENST00000509638 PSMC6P62333 389 aa33.27■■■□□ 2.92
LIMCH1-211ENST00000509638 EPHA7Q15375 998 aa33.27■■■□□ 2.92
LIMCH1-211ENST00000509638 BANK1Q8NDB2 785 aa33.27■■■□□ 2.92
LIMCH1-211ENST00000509638 KCNG4Q8TDN1 519 aa33.27■■■□□ 2.92
LIMCH1-211ENST00000509638 AFAP1L1Q8TED9 768 aa33.27■■■□□ 2.92
LIMCH1-211ENST00000509638 KATNAL1Q9BW62 490 aa33.27■■■□□ 2.92
LIMCH1-211ENST00000509638 TUT1Q9H6E5 874 aaKnown RBP33.27■■■□□ 2.92
LIMCH1-211ENST00000509638 STARD7Q9NQZ5 370 aa33.27■■■□□ 2.92
LIMCH1-211ENST00000509638 COL6A1P12109 1028 aa33.26■■■□□ 2.92
LIMCH1-211ENST00000509638 PDIA5Q14554 519 aa33.26■■■□□ 2.92
LIMCH1-211ENST00000509638 MFSD10Q14728 455 aa33.26■■■□□ 2.92
LIMCH1-211ENST00000509638 PDXDC2PQ6P474 469 aa33.26■■■□□ 2.92
LIMCH1-211ENST00000509638 EIF2AK1Q9BQI3 630 aaKnown RBP33.26■■■□□ 2.92
LIMCH1-211ENST00000509638 SENP6Q9GZR1 1112 aaPredicted RBP33.26■■■□□ 2.92
LIMCH1-211ENST00000509638 ERAP1Q9NZ08 941 aa33.26■■■□□ 2.92
LIMCH1-211ENST00000509638 SRPRBQ9Y5M8 271 aaKnown RBP33.26■■■□□ 2.92
LIMCH1-211ENST00000509638 PP2D1A8MPX8 630 aa33.26■■■□□ 2.91
LIMCH1-211ENST00000509638 CYP4A11Q02928 519 aa33.26■■■□□ 2.91
LIMCH1-211ENST00000509638 KRI1Q8N9T8 703 aaKnown RBP33.26■■■□□ 2.91
LIMCH1-211ENST00000509638 VTI1AQ96AJ9 217 aa33.26■■■□□ 2.91
LIMCH1-211ENST00000509638 C11orf49Q9H6J7 331 aa33.26■■■□□ 2.91
LIMCH1-211ENST00000509638 PPP6R2O75170 966 aa33.25■■■□□ 2.91
LIMCH1-211ENST00000509638 PSEN2P49810 448 aa33.25■■■□□ 2.91
LIMCH1-211ENST00000509638 KIAA0753Q2KHM9 967 aa33.25■■■□□ 2.91
LIMCH1-211ENST00000509638 PLPPR4Q7Z2D5 763 aa33.25■■■□□ 2.91
LIMCH1-211ENST00000509638 ERMNQ8TAM6 284 aa33.25■■■□□ 2.91
LIMCH1-211ENST00000509638 LEO1Q8WVC0 666 aaPredicted RBP33.25■■■□□ 2.91
LIMCH1-211ENST00000509638 TNPO1Q92973 898 aaKnown RBP33.25■■■□□ 2.91
LIMCH1-211ENST00000509638 ATP6V0A1Q93050 837 aa33.25■■■□□ 2.91
LIMCH1-211ENST00000509638 DYDC2Q96IM9 177 aa33.25■■■□□ 2.91
LIMCH1-211ENST00000509638 SPATA32Q96LK8 384 aa33.25■■■□□ 2.91
LIMCH1-211ENST00000509638 LXNQ9BS40 222 aa33.25■■■□□ 2.91
LIMCH1-211ENST00000509638 RGL1Q9NZL6 768 aa33.25■■■□□ 2.91
LIMCH1-211ENST00000509638 MAFBQ9Y5Q3 323 aaPredicted RBP33.25■■■□□ 2.91
LIMCH1-211ENST00000509638 NEK9Q8TD19 979 aa33.24■■■□□ 2.91
LIMCH1-211ENST00000509638 PPP1R13LQ8WUF5 828 aa33.24■■■□□ 2.91
LIMCH1-211ENST00000509638 HAS3O00219 553 aa33.23■■■□□ 2.91
LIMCH1-211ENST00000509638 P4HBP07237 508 aaKnown RBP33.23■■■□□ 2.91
LIMCH1-211ENST00000509638 LONP1P36776 959 aaKnown RBP33.23■■■□□ 2.91
LIMCH1-211ENST00000509638 HAUS3Q68CZ6 603 aa33.23■■■□□ 2.91
LIMCH1-211ENST00000509638 NECAB2Q7Z6G3 386 aa33.23■■■□□ 2.91
LIMCH1-211ENST00000509638 UBE2Q1Q7Z7E8 422 aa33.23■■■□□ 2.91
LIMCH1-211ENST00000509638 CLIC6Q96NY7 704 aa33.23■■■□□ 2.91
LIMCH1-211ENST00000509638 SCAND2PQ9GZW5 306 aaPredicted RBP33.23■■■□□ 2.91
LIMCH1-211ENST00000509638 CSRNP2Q9H175 543 aa33.23■■■□□ 2.91
LIMCH1-211ENST00000509638 RCOR1Q9UKL0 485 aa33.23■■■□□ 2.91
LIMCH1-211ENST00000509638 KAT6AQ92794 2004 aa33.23■■■□□ 2.91
LIMCH1-211ENST00000509638 ZNF862O60290 1169 aa33.22■■■□□ 2.91
LIMCH1-211ENST00000509638 CDC25AP30304 524 aa33.22■■■□□ 2.91
LIMCH1-211ENST00000509638 QARSP47897 775 aaKnown RBP33.22■■■□□ 2.91
LIMCH1-211ENST00000509638 ME1P48163 572 aa33.22■■■□□ 2.91
LIMCH1-211ENST00000509638 SLC26A2P50443 739 aa33.22■■■□□ 2.91
LIMCH1-211ENST00000509638 PRKCEQ02156 737 aa33.22■■■□□ 2.91
LIMCH1-211ENST00000509638 CKAP2LQ8IYA6 745 aa33.22■■■□□ 2.91
LIMCH1-211ENST00000509638 SNX29Q8TEQ0 813 aa33.22■■■□□ 2.91
LIMCH1-211ENST00000509638 AK8Q96MA6 479 aa33.22■■■□□ 2.91
LIMCH1-211ENST00000509638 GDPD2Q9HCC8 539 aa33.22■■■□□ 2.91
LIMCH1-211ENST00000509638 GRIN2DO15399 1336 aa33.22■■■□□ 2.91
LIMCH1-211ENST00000509638 ARID2Q68CP9 1835 aa33.22■■■□□ 2.91
LIMCH1-211ENST00000509638 PSMC5P62195 406 aa33.21■■■□□ 2.91
LIMCH1-211ENST00000509638 CTTNQ14247 550 aaKnown RBP33.21■■■□□ 2.91
LIMCH1-211ENST00000509638 NBPF20Q3BBV1 942 aa33.21■■■□□ 2.91
LIMCH1-211ENST00000509638 HSD17B14Q9BPX1 270 aa33.21■■■□□ 2.91
LIMCH1-211ENST00000509638 WRAP73Q9P2S5 460 aaPredicted RBP33.21■■■□□ 2.91
LIMCH1-211ENST00000509638 A0A0U1RQG5 324 aaPredicted RBP33.21■■■□□ 2.91
LIMCH1-211ENST00000509638 ITGA7Q13683 1181 aa33.21■■■□□ 2.91
LIMCH1-211ENST00000509638 RNPEPQ9H4A4 650 aa33.21■■■□□ 2.91
LIMCH1-211ENST00000509638 TRPC6Q9Y210 931 aa33.21■■■□□ 2.91
LIMCH1-211ENST00000509638 MED24O75448 989 aa33.2■■■□□ 2.91
LIMCH1-211ENST00000509638 ATP4AP20648 1035 aa33.2■■■□□ 2.91
LIMCH1-211ENST00000509638 PLCB4Q15147 1175 aa33.2■■■□□ 2.91
LIMCH1-211ENST00000509638 KRT79Q5XKE5 535 aa33.2■■■□□ 2.91
LIMCH1-211ENST00000509638 TRMT1LQ7Z2T5 733 aaKnown RBP33.2■■■□□ 2.91
LIMCH1-211ENST00000509638 TPH2Q8IWU9 490 aa33.2■■■□□ 2.91
LIMCH1-211ENST00000509638 POTEB3A0JP26 581 aa33.19■■■□□ 2.9
LIMCH1-211ENST00000509638 SLITRK3O94933 977 aa33.19■■■□□ 2.9
LIMCH1-211ENST00000509638 CCT6AP40227 531 aaKnown RBP33.19■■■□□ 2.9
LIMCH1-211ENST00000509638 ATN1P54259 1190 aaPredicted RBP33.19■■■□□ 2.9
LIMCH1-211ENST00000509638 SPECC1Q5M775 1068 aa33.19■■■□□ 2.9
LIMCH1-211ENST00000509638 POTEBQ6S5H4 581 aa33.19■■■□□ 2.9
LIMCH1-211ENST00000509638 ATP8B4Q8TF62 1192 aa33.19■■■□□ 2.9
LIMCH1-211ENST00000509638 MMTAG2Q9BU76 263 aaKnown RBP33.19■■■□□ 2.9
LIMCH1-211ENST00000509638 POLR3CQ9BUI4 534 aaPredicted RBP33.19■■■□□ 2.9
LIMCH1-211ENST00000509638 ZSWIM4Q9H7M6 989 aa33.19■■■□□ 2.9
LIMCH1-211ENST00000509638 TUFT1Q9NNX1 390 aa33.19■■■□□ 2.9
LIMCH1-211ENST00000509638 STK24Q9Y6E0 443 aa33.19■■■□□ 2.9
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms