RNA–Protein interactions for RNA: ENST00000491330.1

PDLIM2-217, Transcript of PDZ and LIM domain 2, humanhuman

TSL 3

Gene PDLIM2, Length 563 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-217ENST00000491330 TMEM260Q9NX78 707 aa18.82■□□□□ 0.6
PDLIM2-217ENST00000491330 IPO5O00410 1097 aaKnown RBP18.81■□□□□ 0.6
PDLIM2-217ENST00000491330 ARP10275 920 aa18.81■□□□□ 0.6
PDLIM2-217ENST00000491330 CLK2P49760 499 aaKnown RBP18.81■□□□□ 0.6
PDLIM2-217ENST00000491330 EVCP57679 992 aa18.81■□□□□ 0.6
PDLIM2-217ENST00000491330 CCDC85BQ15834 202 aaPredicted RBP18.81■□□□□ 0.6
PDLIM2-217ENST00000491330 ODR4Q5SWX8 454 aa18.81■□□□□ 0.6
PDLIM2-217ENST00000491330 TYW1BQ6NUM6 668 aa18.81■□□□□ 0.6
PDLIM2-217ENST00000491330 FAM117BQ6P1L5 589 aa18.81■□□□□ 0.6
PDLIM2-217ENST00000491330 USP38Q8NB14 1042 aa18.81■□□□□ 0.6
PDLIM2-217ENST00000491330 ATXN2LQ8WWM7 1075 aaKnown RBP18.81■□□□□ 0.6
PDLIM2-217ENST00000491330 TGS1Q96RS0 853 aaKnown RBP18.81■□□□□ 0.6
PDLIM2-217ENST00000491330 YME1L1Q96TA2 773 aa18.81■□□□□ 0.6
PDLIM2-217ENST00000491330 RNF216Q9NWF9 866 aaPredicted RBP18.81■□□□□ 0.6
PDLIM2-217ENST00000491330 LAMA3Q16787 3333 aa18.81■□□□□ 0.6
PDLIM2-217ENST00000491330 POTEB3A0JP26 581 aa18.8■□□□□ 0.6
PDLIM2-217ENST00000491330 HBP1O60381 514 aa18.8■□□□□ 0.6
PDLIM2-217ENST00000491330 DEXIO95424 95 aa18.8■□□□□ 0.6
PDLIM2-217ENST00000491330 INSRRP14616 1297 aa18.8■□□□□ 0.6
PDLIM2-217ENST00000491330 KRT76Q01546 638 aa18.8■□□□□ 0.6
PDLIM2-217ENST00000491330 TAP1Q03518 808 aa18.8■□□□□ 0.6
PDLIM2-217ENST00000491330 FAM26DQ5JW98 314 aa18.8■□□□□ 0.6
PDLIM2-217ENST00000491330 GALNT17Q6IS24 598 aa18.8■□□□□ 0.6
PDLIM2-217ENST00000491330 POTEBQ6S5H4 581 aa18.8■□□□□ 0.6
PDLIM2-217ENST00000491330 NME8Q8N427 588 aa18.8■□□□□ 0.6
PDLIM2-217ENST00000491330 WNT8BQ93098 351 aa18.8■□□□□ 0.6
PDLIM2-217ENST00000491330 SAMD11Q96NU1 681 aa18.8■□□□□ 0.6
PDLIM2-217ENST00000491330 CERS4Q9HA82 394 aa18.8■□□□□ 0.6
PDLIM2-217ENST00000491330 ZNF302Q9NR11 478 aa18.8■□□□□ 0.6
PDLIM2-217ENST00000491330 THEGQ9P2T0 379 aa18.8■□□□□ 0.6
PDLIM2-217ENST00000491330 SAMM50Q9Y512 469 aa18.8■□□□□ 0.6
PDLIM2-217ENST00000491330 SZT2Q5T011 3432 aa18.8■□□□□ 0.6
PDLIM2-217ENST00000491330 DDX39AO00148 427 aaKnown RBP18.79■□□□□ 0.6
PDLIM2-217ENST00000491330 PSAPP07602 524 aa18.79■□□□□ 0.6
PDLIM2-217ENST00000491330 USP11P51784 963 aa18.79■□□□□ 0.6
PDLIM2-217ENST00000491330 ADAM17P78536 824 aa18.79■□□□□ 0.6
PDLIM2-217ENST00000491330 DEFB103AP81534 67 aa18.79■□□□□ 0.6
PDLIM2-217ENST00000491330 HIC1Q14526 733 aa18.79■□□□□ 0.6
PDLIM2-217ENST00000491330 GPNMBQ14956 572 aa18.79■□□□□ 0.6
PDLIM2-217ENST00000491330 TJAP1Q5JTD0 557 aa18.79■□□□□ 0.6
PDLIM2-217ENST00000491330 PDXDC2PQ6P474 469 aa18.79■□□□□ 0.6
PDLIM2-217ENST00000491330 TRAF7Q6Q0C0 670 aa18.79■□□□□ 0.6
PDLIM2-217ENST00000491330 SMAP1Q8IYB5 467 aaPredicted RBP18.79■□□□□ 0.6
PDLIM2-217ENST00000491330 CYP2W1Q8TAV3 490 aa18.79■□□□□ 0.6
PDLIM2-217ENST00000491330 LMCD1Q9NZU5 365 aa18.79■□□□□ 0.6
PDLIM2-217ENST00000491330 CEP131Q9UPN4 1083 aa18.79■□□□□ 0.6
PDLIM2-217ENST00000491330 MBLAC1A4D2B0 266 aaPredicted RBP18.78■□□□□ 0.6
PDLIM2-217ENST00000491330 MRPS5P82675 430 aaKnown RBP18.78■□□□□ 0.6
PDLIM2-217ENST00000491330 PRR16Q569H4 304 aa18.78■□□□□ 0.6
PDLIM2-217ENST00000491330 ZNF746Q6NUN9 644 aaPredicted RBP18.78■□□□□ 0.6
PDLIM2-217ENST00000491330 DNAJB3Q8WWF6 145 aa18.78■□□□□ 0.6
PDLIM2-217ENST00000491330 FTHL17Q9BXU8 183 aa18.78■□□□□ 0.6
PDLIM2-217ENST00000491330 FAM49AQ9H0Q0 323 aaPredicted RBP18.78■□□□□ 0.6
PDLIM2-217ENST00000491330 SLKQ9H2G2 1235 aaPredicted RBP18.78■□□□□ 0.6
PDLIM2-217ENST00000491330 PCDHA2Q9Y5H9 948 aa18.78■□□□□ 0.6
PDLIM2-217ENST00000491330 SQORQ9Y6N5 450 aa18.78■□□□□ 0.6
PDLIM2-217ENST00000491330 MYH7BA7E2Y1 1941 aa18.77■□□□□ 0.6
PDLIM2-217ENST00000491330 ATG7O95352 703 aa18.77■□□□□ 0.6
PDLIM2-217ENST00000491330 POU3F3P20264 500 aaPredicted RBP18.77■□□□□ 0.6
PDLIM2-217ENST00000491330 MRPS6P82932 125 aaKnown RBP18.77■□□□□ 0.6
PDLIM2-217ENST00000491330 ADGRE1Q14246 886 aa18.77■□□□□ 0.6
PDLIM2-217ENST00000491330 MBTPS1Q14703 1052 aa18.77■□□□□ 0.6
PDLIM2-217ENST00000491330 PLCB4Q15147 1175 aa18.77■□□□□ 0.6
PDLIM2-217ENST00000491330 PKN1Q16512 942 aa18.77■□□□□ 0.6
PDLIM2-217ENST00000491330 PTPROQ16827 1216 aa18.77■□□□□ 0.6
PDLIM2-217ENST00000491330 ZNF484Q5JVG2 852 aa18.77■□□□□ 0.6
PDLIM2-217ENST00000491330 WASF1Q92558 559 aa18.77■□□□□ 0.6
PDLIM2-217ENST00000491330 FAM167AQ96KS9 214 aa18.77■□□□□ 0.6
PDLIM2-217ENST00000491330 UPF3BQ9BZI7 483 aaKnown RBP18.77■□□□□ 0.6
PDLIM2-217ENST00000491330 VPS54Q9P1Q0 977 aa18.77■□□□□ 0.6
PDLIM2-217ENST00000491330 PCDHA10Q9Y5I2 948 aa18.77■□□□□ 0.6
PDLIM2-217ENST00000491330 FAM86B1E9PN63 330 aa18.76■□□□□ 0.59
PDLIM2-217ENST00000491330 UPP2O95045 317 aa18.76■□□□□ 0.59
PDLIM2-217ENST00000491330 FAM86B2P0C5J1 330 aa18.76■□□□□ 0.59
PDLIM2-217ENST00000491330 GHRP10912 638 aa18.76■□□□□ 0.59
PDLIM2-217ENST00000491330 STK3Q13188 491 aa18.76■□□□□ 0.59
PDLIM2-217ENST00000491330 ITGB3BPQ13352 177 aaPredicted RBP18.76■□□□□ 0.59
PDLIM2-217ENST00000491330 SWSAP1Q6NVH7 229 aa18.76■□□□□ 0.59
PDLIM2-217ENST00000491330 TSHZ1Q6ZSZ6 1077 aa18.76■□□□□ 0.59
PDLIM2-217ENST00000491330 ZNF710Q8N1W2 664 aa18.76■□□□□ 0.59
PDLIM2-217ENST00000491330 ATP8B4Q8TF62 1192 aa18.76■□□□□ 0.59
PDLIM2-217ENST00000491330 TOP1MTQ969P6 601 aa18.76■□□□□ 0.59
PDLIM2-217ENST00000491330 IL17RAQ96F46 866 aa18.76■□□□□ 0.59
PDLIM2-217ENST00000491330 NCOA5Q9HCD5 579 aaKnown RBP18.76■□□□□ 0.59
PDLIM2-217ENST00000491330 NRBP2Q9NSY0 501 aa18.76■□□□□ 0.59
PDLIM2-217ENST00000491330 COG5Q9UP83 839 aa18.76■□□□□ 0.59
PDLIM2-217ENST00000491330 RWDD3Q9Y3V2 267 aa18.76■□□□□ 0.59
PDLIM2-217ENST00000491330 CDY2AQ9Y6F7 541 aa18.76■□□□□ 0.59
PDLIM2-217ENST00000491330 COL1A2P08123 1366 aa18.76■□□□□ 0.59
PDLIM2-217ENST00000491330 SMIM35A0A1B0GVV1 85 aa18.75■□□□□ 0.59
PDLIM2-217ENST00000491330 WDR64B1ANS9 1081 aa18.75■□□□□ 0.59
PDLIM2-217ENST00000491330 STAG3L1P0CL83 205 aa18.75■□□□□ 0.59
PDLIM2-217ENST00000491330 TMOD1P28289 359 aa18.75■□□□□ 0.59
PDLIM2-217ENST00000491330 SFNP31947 248 aa18.75■□□□□ 0.59
PDLIM2-217ENST00000491330 CIITAP33076 1130 aa18.75■□□□□ 0.59
PDLIM2-217ENST00000491330 ERVK-21P61565 698 aa18.75■□□□□ 0.59
PDLIM2-217ENST00000491330 TOB2Q14106 344 aaPredicted RBP18.75■□□□□ 0.59
PDLIM2-217ENST00000491330 NTRK3Q16288 839 aa18.75■□□□□ 0.59
PDLIM2-217ENST00000491330 ABHD15Q6UXT9 468 aa18.75■□□□□ 0.59
PDLIM2-217ENST00000491330 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms