RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 FRMD3A2A2Y4 597 aa19.73■□□□□ 0.75
VIM-206ENST00000487938 FAM86B1E9PN63 330 aa19.73■□□□□ 0.75
VIM-206ENST00000487938 GDF11O95390 407 aa19.73■□□□□ 0.75
VIM-206ENST00000487938 FAM86B2P0C5J1 330 aa19.73■□□□□ 0.75
VIM-206ENST00000487938 HOXD13P35453 343 aa19.73■□□□□ 0.75
VIM-206ENST00000487938 CYP4A11Q02928 519 aa19.73■□□□□ 0.75
VIM-206ENST00000487938 DCAF4Q8WV16 495 aa19.73■□□□□ 0.75
VIM-206ENST00000487938 MBOAT7Q96N66 472 aa19.73■□□□□ 0.75
VIM-206ENST00000487938 REEP2Q9BRK0 252 aa19.73■□□□□ 0.75
VIM-206ENST00000487938 AIPL1Q9NZN9 384 aa19.73■□□□□ 0.75
VIM-206ENST00000487938 DNM3Q9UQ16 869 aa19.73■□□□□ 0.75
VIM-206ENST00000487938 IVLP07476 585 aa19.73■□□□□ 0.75
VIM-206ENST00000487938 MYBP10242 640 aa19.73■□□□□ 0.75
VIM-206ENST00000487938 SH3BP5LQ7L8J4 393 aa19.73■□□□□ 0.75
VIM-206ENST00000487938 TSEN2Q8NCE0 465 aaKnown RBP19.73■□□□□ 0.75
VIM-206ENST00000487938 NYAP2Q9P242 653 aa19.73■□□□□ 0.75
VIM-206ENST00000487938 RSPH10B2B2RC85 870 aa19.72■□□□□ 0.75
VIM-206ENST00000487938 F5H6K3 240 aa19.72■□□□□ 0.75
VIM-206ENST00000487938 RPS6KA5O75582 802 aa19.72■□□□□ 0.75
VIM-206ENST00000487938 RSPH10BP0C881 870 aa19.72■□□□□ 0.75
VIM-206ENST00000487938 HOXA13P31271 388 aaPredicted RBP19.72■□□□□ 0.75
VIM-206ENST00000487938 KLRC3Q07444 240 aa19.72■□□□□ 0.75
VIM-206ENST00000487938 EDRF1Q3B7T1 1238 aa19.72■□□□□ 0.75
VIM-206ENST00000487938 ZC3H3Q8IXZ2 948 aaKnown RBP19.72■□□□□ 0.75
VIM-206ENST00000487938 CYP2W1Q8TAV3 490 aa19.72■□□□□ 0.75
VIM-206ENST00000487938 CRYGNQ8WXF5 182 aa19.72■□□□□ 0.75
VIM-206ENST00000487938 PITPNM2Q9BZ72 1349 aa19.72■□□□□ 0.75
VIM-206ENST00000487938 LUC7LQ9NQ29 371 aaKnown RBP19.72■□□□□ 0.75
VIM-206ENST00000487938 FAM198AQ9UFP1 575 aa19.72■□□□□ 0.75
VIM-206ENST00000487938 GOLGA6CA6NDK9 693 aa19.72■□□□□ 0.75
VIM-206ENST00000487938 GLI1P08151 1106 aa19.72■□□□□ 0.75
VIM-206ENST00000487938 GOLGA6DP0CG33 693 aa19.72■□□□□ 0.75
VIM-206ENST00000487938 KNOP1Q1ED39 458 aaKnown RBP19.72■□□□□ 0.75
VIM-206ENST00000487938 SYT2Q8N9I0 419 aaPredicted RBP19.72■□□□□ 0.75
VIM-206ENST00000487938 AMNQ9BXJ7 453 aa19.72■□□□□ 0.75
VIM-206ENST00000487938 GOLGA6AQ9NYA3 693 aa19.72■□□□□ 0.75
VIM-206ENST00000487938 PI4KBQ9UBF8 816 aa19.72■□□□□ 0.75
VIM-206ENST00000487938 RSPH14Q9UHP6 348 aa19.72■□□□□ 0.75
VIM-206ENST00000487938 TSKSQ9UJT2 592 aa19.72■□□□□ 0.75
VIM-206ENST00000487938 GOLGB1Q14789 3259 aaKnown RBP19.72■□□□□ 0.75
VIM-206ENST00000487938 LRRC37AA6NMS7 1700 aa19.71■□□□□ 0.75
VIM-206ENST00000487938 ESYT3A0FGR9 886 aa19.71■□□□□ 0.75
VIM-206ENST00000487938 ZSCAN5CA6NGD5 496 aaPredicted RBP19.71■□□□□ 0.75
VIM-206ENST00000487938 TRIM66O15016 1216 aa19.71■□□□□ 0.75
VIM-206ENST00000487938 HMGB2P26583 209 aaKnown RBP19.71■□□□□ 0.75
VIM-206ENST00000487938 EPHB4P54760 987 aa19.71■□□□□ 0.75
VIM-206ENST00000487938 ICA1Q05084 483 aa19.71■□□□□ 0.75
VIM-206ENST00000487938 PTK2Q05397 1052 aa19.71■□□□□ 0.75
VIM-206ENST00000487938 AP3B2Q13367 1082 aa19.71■□□□□ 0.75
VIM-206ENST00000487938 MEI1Q5TIA1 1274 aa19.71■□□□□ 0.75
VIM-206ENST00000487938 SLC30A10Q6XR72 485 aa19.71■□□□□ 0.75
VIM-206ENST00000487938 LENG9Q96B70 501 aa19.71■□□□□ 0.75
VIM-206ENST00000487938 ZDHHC15Q96MV8 337 aa19.71■□□□□ 0.75
VIM-206ENST00000487938 ARMCX3Q9UH62 379 aaPredicted RBP19.71■□□□□ 0.75
VIM-206ENST00000487938 GREB1LQ9C091 1923 aaPredicted RBP19.71■□□□□ 0.75
VIM-206ENST00000487938 C10orf71Q711Q0 1435 aa19.71■□□□□ 0.75
VIM-206ENST00000487938 SPDYE3A6NKU9 549 aa19.71■□□□□ 0.75
VIM-206ENST00000487938 SFI1A8K8P3 1242 aa19.71■□□□□ 0.75
VIM-206ENST00000487938 NPR1P16066 1061 aa19.71■□□□□ 0.75
VIM-206ENST00000487938 RPA1P27694 616 aa19.71■□□□□ 0.75
VIM-206ENST00000487938 DCAF17Q5H9S7 520 aaPredicted RBP19.71■□□□□ 0.75
VIM-206ENST00000487938 PPP4R3CPQ6ZMV5 832 aa19.71■□□□□ 0.75
VIM-206ENST00000487938 IRF2BP2Q7Z5L9 587 aa19.71■□□□□ 0.75
VIM-206ENST00000487938 FBXO11Q86XK2 927 aa19.71■□□□□ 0.75
VIM-206ENST00000487938 ERMNQ8TAM6 284 aa19.71■□□□□ 0.75
VIM-206ENST00000487938 FAM76AQ8TAV0 307 aa19.71■□□□□ 0.75
VIM-206ENST00000487938 IFT81Q8WYA0 676 aa19.71■□□□□ 0.75
VIM-206ENST00000487938 CARSP49589 748 aaKnown RBP19.7■□□□□ 0.74
VIM-206ENST00000487938 PTPROQ16827 1216 aa19.7■□□□□ 0.74
VIM-206ENST00000487938 Q4G0T1 1027 aa19.7■□□□□ 0.74
VIM-206ENST00000487938 TCERG1LQ5VWI1 586 aa19.7■□□□□ 0.74
VIM-206ENST00000487938 ZNF571Q7Z3V5 609 aaPredicted RBP19.7■□□□□ 0.74
VIM-206ENST00000487938 SRLQ86TD4 932 aa19.7■□□□□ 0.74
VIM-206ENST00000487938 SPAG5Q96R06 1193 aa19.7■□□□□ 0.74
VIM-206ENST00000487938 BHMT2Q9H2M3 363 aa19.7■□□□□ 0.74
VIM-206ENST00000487938 GOLPH3Q9H4A6 298 aa19.7■□□□□ 0.74
VIM-206ENST00000487938 EPB41L5Q9HCM4 733 aa19.7■□□□□ 0.74
VIM-206ENST00000487938 TRAF3IP3Q9Y228 551 aa19.7■□□□□ 0.74
VIM-206ENST00000487938 RRP15Q9Y3B9 282 aaKnown RBP19.7■□□□□ 0.74
VIM-206ENST00000487938 GRID2IPA4D2P6 1211 aa19.69■□□□□ 0.74
VIM-206ENST00000487938 MYO1CO00159 1063 aa19.69■□□□□ 0.74
VIM-206ENST00000487938 CLIC2O15247 247 aa19.69■□□□□ 0.74
VIM-206ENST00000487938 MSH4O15457 936 aa19.69■□□□□ 0.74
VIM-206ENST00000487938 AKAP3O75969 853 aa19.69■□□□□ 0.74
VIM-206ENST00000487938 AFPP02771 609 aaKnown RBP19.69■□□□□ 0.74
VIM-206ENST00000487938 CASP4P49662 377 aa19.69■□□□□ 0.74
VIM-206ENST00000487938 GUCY2DQ02846 1103 aa19.69■□□□□ 0.74
VIM-206ENST00000487938 KCNA1Q09470 495 aa19.69■□□□□ 0.74
VIM-206ENST00000487938 DPY19L2P1Q6NXN4 242 aa19.69■□□□□ 0.74
VIM-206ENST00000487938 MOXD1Q6UVY6 613 aa19.69■□□□□ 0.74
VIM-206ENST00000487938 C10orf67Q8IYJ2 551 aa19.69■□□□□ 0.74
VIM-206ENST00000487938 RUBCNQ92622 972 aa19.69■□□□□ 0.74
VIM-206ENST00000487938 KRT12Q99456 494 aa19.69■□□□□ 0.74
VIM-206ENST00000487938 RGL1Q9NZL6 768 aa19.69■□□□□ 0.74
VIM-206ENST00000487938 FEZ2Q9UHY8 353 aaPredicted RBP19.69■□□□□ 0.74
VIM-206ENST00000487938 NFU1Q9UMS0 254 aa19.69■□□□□ 0.74
VIM-206ENST00000487938 PCDHGC5Q9Y5F6 944 aa19.69■□□□□ 0.74
VIM-206ENST00000487938 QSER1Q2KHR3 1735 aa19.69■□□□□ 0.74
VIM-206ENST00000487938 UCHL3P15374 230 aa19.69■□□□□ 0.74
VIM-206ENST00000487938 PON1P27169 355 aa19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 191.4 ms