RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 SUPT20HL2P0C7V6 817 aa9.24□□□□□ -0.93
SYNE1-225ENST00000481502 SPATA31C1P0DKV0 1188 aa9.24□□□□□ -0.93
SYNE1-225ENST00000481502 HSPA8P11142 646 aaKnown RBP9.24□□□□□ -0.93
SYNE1-225ENST00000481502 SMPD1P17405 629 aa9.24□□□□□ -0.93
SYNE1-225ENST00000481502 CST5P28325 142 aaPredicted RBP9.24□□□□□ -0.93
SYNE1-225ENST00000481502 CYP2C19P33261 490 aa9.24□□□□□ -0.93
SYNE1-225ENST00000481502 CCT6AP40227 531 aaKnown RBP9.24□□□□□ -0.93
SYNE1-225ENST00000481502 ADCYAP1R1P41586 468 aa9.24□□□□□ -0.93
SYNE1-225ENST00000481502 NDUFA8P51970 172 aa9.24□□□□□ -0.93
SYNE1-225ENST00000481502 GJA9P57773 515 aa9.24□□□□□ -0.93
SYNE1-225ENST00000481502 GRIN1Q05586 938 aa9.24□□□□□ -0.93
SYNE1-225ENST00000481502 CACNB2Q08289 660 aaPredicted RBP9.24□□□□□ -0.93
SYNE1-225ENST00000481502 E2F4Q16254 413 aa9.24□□□□□ -0.93
SYNE1-225ENST00000481502 CCL14Q16627 93 aa9.24□□□□□ -0.93
SYNE1-225ENST00000481502 DGKDQ16760 1214 aa9.24□□□□□ -0.93
SYNE1-225ENST00000481502 LY6KQ17RY6 165 aa9.24□□□□□ -0.93
SYNE1-225ENST00000481502 XKR3Q5GH77 459 aa9.24□□□□□ -0.93
SYNE1-225ENST00000481502 NCAPH2Q6IBW4 605 aa9.24□□□□□ -0.93
SYNE1-225ENST00000481502 FBXO46Q6PJ61 603 aaPredicted RBP9.24□□□□□ -0.93
SYNE1-225ENST00000481502 EEPD1Q7L9B9 569 aa9.24□□□□□ -0.93
SYNE1-225ENST00000481502 CEP57L1Q8IYX8 460 aa9.24□□□□□ -0.93
SYNE1-225ENST00000481502 RASSF8Q8NHQ8 419 aa9.24□□□□□ -0.93
SYNE1-225ENST00000481502 SPATA33Q96N06 139 aa9.24□□□□□ -0.93
SYNE1-225ENST00000481502 GPR20Q99678 358 aa9.24□□□□□ -0.93
SYNE1-225ENST00000481502 TIPINQ9BVW5 301 aa9.24□□□□□ -0.93
SYNE1-225ENST00000481502 AP5M1Q9H0R1 490 aa9.24□□□□□ -0.93
SYNE1-225ENST00000481502 UPF3AQ9H1J1 476 aaKnown RBP9.24□□□□□ -0.93
SYNE1-225ENST00000481502 AZI2Q9H6S1 392 aa9.24□□□□□ -0.93
SYNE1-225ENST00000481502 HMX1Q9NP08 348 aaPredicted RBP9.24□□□□□ -0.93
SYNE1-225ENST00000481502 PRDM10Q9NQV6 1147 aa9.24□□□□□ -0.93
SYNE1-225ENST00000481502 PDGFCQ9NRA1 345 aa9.24□□□□□ -0.93
SYNE1-225ENST00000481502 NRBP2Q9NSY0 501 aa9.24□□□□□ -0.93
SYNE1-225ENST00000481502 BMP2KQ9NSY1 1161 aaPredicted RBP9.24□□□□□ -0.93
SYNE1-225ENST00000481502 KBTBD4Q9NVX7 518 aa9.24□□□□□ -0.93
SYNE1-225ENST00000481502 ZHX1Q9UKY1 873 aaPredicted RBP9.24□□□□□ -0.93
SYNE1-225ENST00000481502 SAMM50Q9Y512 469 aa9.24□□□□□ -0.93
SYNE1-225ENST00000481502 GSTTP1A0A1W2PQM5 241 aa9.23□□□□□ -0.93
SYNE1-225ENST00000481502 POLR2DO15514 142 aaKnown RBP9.23□□□□□ -0.93
SYNE1-225ENST00000481502 GAS2O43903 313 aaKnown RBP9.23□□□□□ -0.93
SYNE1-225ENST00000481502 CABYRO75952 493 aa9.23□□□□□ -0.93
SYNE1-225ENST00000481502 EYA4O95677 639 aa9.23□□□□□ -0.93
SYNE1-225ENST00000481502 CCNE2O96020 404 aa9.23□□□□□ -0.93
SYNE1-225ENST00000481502 RARBP10826 455 aa9.23□□□□□ -0.93
SYNE1-225ENST00000481502 PRKAR2AP13861 404 aaKnown RBP9.23□□□□□ -0.93
SYNE1-225ENST00000481502 SCP2P22307 547 aa9.23□□□□□ -0.93
SYNE1-225ENST00000481502 STAT6P42226 847 aa9.23□□□□□ -0.93
SYNE1-225ENST00000481502 STAT5BP51692 787 aa9.23□□□□□ -0.93
SYNE1-225ENST00000481502 CAP1Q01518 475 aa9.23□□□□□ -0.93
SYNE1-225ENST00000481502 GRB10Q13322 594 aa9.23□□□□□ -0.93
SYNE1-225ENST00000481502 HSDL1Q3SXM5 330 aa9.23□□□□□ -0.93
SYNE1-225ENST00000481502 KRBA2Q6ZNG9 492 aa9.23□□□□□ -0.93
SYNE1-225ENST00000481502 SV2BQ7L1I2 683 aa9.23□□□□□ -0.93
SYNE1-225ENST00000481502 SH3RF1Q7Z6J0 888 aa9.23□□□□□ -0.93
SYNE1-225ENST00000481502 ZNF710Q8N1W2 664 aa9.23□□□□□ -0.93
SYNE1-225ENST00000481502 SYT2Q8N9I0 419 aaPredicted RBP9.23□□□□□ -0.93
SYNE1-225ENST00000481502 PCSK9Q8NBP7 692 aaKnown RBP9.23□□□□□ -0.93
SYNE1-225ENST00000481502 CNNM3Q8NE01 707 aa9.23□□□□□ -0.93
SYNE1-225ENST00000481502 GPT2Q8TD30 523 aa9.23□□□□□ -0.93
SYNE1-225ENST00000481502 BBXQ8WY36 941 aaPredicted RBP9.23□□□□□ -0.93
SYNE1-225ENST00000481502 LARP4BQ92615 738 aaKnown RBP9.23□□□□□ -0.93
SYNE1-225ENST00000481502 RAD54LQ92698 747 aa9.23□□□□□ -0.93
SYNE1-225ENST00000481502 JPH2Q9BR39 696 aaPredicted RBP9.23□□□□□ -0.93
SYNE1-225ENST00000481502 TSEN34Q9BSV6 310 aaKnown RBP9.23□□□□□ -0.93
SYNE1-225ENST00000481502 KATNAL1Q9BW62 490 aa9.23□□□□□ -0.93
SYNE1-225ENST00000481502 NIFKQ9BYG3 293 aaKnown RBP9.23□□□□□ -0.93
SYNE1-225ENST00000481502 ZNF302Q9NR11 478 aa9.23□□□□□ -0.93
SYNE1-225ENST00000481502 DACT1Q9NYF0 836 aa9.23□□□□□ -0.93
SYNE1-225ENST00000481502 ERAP1Q9NZ08 941 aa9.23□□□□□ -0.93
SYNE1-225ENST00000481502 ZNF215Q9UL58 517 aaPredicted RBP9.23□□□□□ -0.93
SYNE1-225ENST00000481502 KIAA1024Q9UPX6 916 aa9.23□□□□□ -0.93
SYNE1-225ENST00000481502 IGSF9BQ9UPX0 1349 aa9.23□□□□□ -0.93
SYNE1-225ENST00000481502 PVALEFA0A1B0GWK0 134 aa9.22□□□□□ -0.93
SYNE1-225ENST00000481502 ACTN4O43707 911 aaKnown RBP9.22□□□□□ -0.93
SYNE1-225ENST00000481502 HBP1O60381 514 aa9.22□□□□□ -0.93
SYNE1-225ENST00000481502 MED24O75448 989 aa9.22□□□□□ -0.93
SYNE1-225ENST00000481502 NR1I2O75469 434 aa9.22□□□□□ -0.93
SYNE1-225ENST00000481502 RPLP2P05387 115 aaKnown RBP9.22□□□□□ -0.93
SYNE1-225ENST00000481502 LIG1P18858 919 aa9.22□□□□□ -0.93
SYNE1-225ENST00000481502 PLCG1P19174 1290 aa9.22□□□□□ -0.93
SYNE1-225ENST00000481502 ABCD1P33897 745 aa9.22□□□□□ -0.93
SYNE1-225ENST00000481502 TCF7P36402 384 aaPredicted RBP9.22□□□□□ -0.93
SYNE1-225ENST00000481502 NAALADL2Q58DX5 795 aa9.22□□□□□ -0.93
SYNE1-225ENST00000481502 CT47A1Q5JQC4 288 aaPredicted RBP9.22□□□□□ -0.93
SYNE1-225ENST00000481502 CCDC183Q5T5S1 534 aa9.22□□□□□ -0.93
SYNE1-225ENST00000481502 NT5DC1Q5TFE4 455 aa9.22□□□□□ -0.93
SYNE1-225ENST00000481502 SWSAP1Q6NVH7 229 aa9.22□□□□□ -0.93
SYNE1-225ENST00000481502 RBM43Q6ZSC3 357 aaKnown RBP9.22□□□□□ -0.93
SYNE1-225ENST00000481502 USP49Q70CQ1 688 aa9.22□□□□□ -0.93
SYNE1-225ENST00000481502 TLK2Q86UE8 772 aa9.22□□□□□ -0.93
SYNE1-225ENST00000481502 TPH2Q8IWU9 490 aa9.22□□□□□ -0.93
SYNE1-225ENST00000481502 OR6J1Q8NGC5 347 aa9.22□□□□□ -0.93
SYNE1-225ENST00000481502 SPATA20Q8TB22 786 aa9.22□□□□□ -0.93
SYNE1-225ENST00000481502 DYDC2Q96IM9 177 aa9.22□□□□□ -0.93
SYNE1-225ENST00000481502 ZFP91Q96JP5 570 aaPredicted RBP9.22□□□□□ -0.93
SYNE1-225ENST00000481502 PNMA5Q96PV4 448 aa9.22□□□□□ -0.93
SYNE1-225ENST00000481502 GSDMAQ96QA5 445 aa9.22□□□□□ -0.93
SYNE1-225ENST00000481502 C7orf25Q9BPX7 421 aa9.22□□□□□ -0.93
SYNE1-225ENST00000481502 LXNQ9BS40 222 aa9.22□□□□□ -0.93
SYNE1-225ENST00000481502 GOLPH3LQ9H4A5 285 aa9.22□□□□□ -0.93
SYNE1-225ENST00000481502 CLSTN2Q9H4D0 955 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms