RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	FILIP1L	Q4L180	1135 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	GORAB	Q5T7V8	394 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	WWC2	Q6AWC2	1192 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	ATL3	Q6DD88	541 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	RCSD1	Q6JBY9	416 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	PRRT2	Q7Z6L0	340 aa	Predicted RBP	5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	YTHDF3	Q7Z739	585 aa	Known RBP	5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	NME9	Q86XW9	330 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	AMOTL1	Q8IY63	956 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	CCDC146	Q8IYE0	955 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	CXorf38	Q8TB03	319 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	GOLGA1	Q92805	767 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	CHMP4C	Q96CF2	233 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520		Q96M66	194 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	FUT8	Q9BYC5	575 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	API5	Q9BZZ5	524 aa	Known RBP	5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	SRCIN1	Q9C0H9	1055 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	DUSP15	Q9H1R2	295 aa	Predicted RBP	5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	SLC6A17	Q9H1V8	727 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	TNMD	Q9H2S6	317 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	DCTPP1	Q9H773	170 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	ETAA1	Q9NY74	926 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	CPSF2	Q9P2I0	782 aa	Known RBP	5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	LCMT1	Q9UIC8	334 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	ANAPC4	Q9UJX5	808 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	SAMM50	Q9Y512	469 aa		5.35	□□□□□ -1.55
PTCD3-212	ENST00000477520	ALS2	Q96Q42	1657 aa		5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	COL16A1	Q07092	1604 aa	Predicted RBP	5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	NRK	Q7Z2Y5	1582 aa		5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	PNPLA6	Q8IY17	1366 aa		5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	MAP3K5	Q99683	1374 aa		5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	GOLGA6L4	A6NEF3	574 aa		5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	SRRM3	A6NNA2	597 aa	Predicted RBP	5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	STX6	O43752	255 aa		5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	F13A1	P00488	732 aa		5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	CST3	P01034	146 aa	Predicted RBP	5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	GC	P02774	474 aa		5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	GPT	P24298	496 aa		5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	HNRNPH1	P31943	449 aa	Known RBP	5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	SLC8A1	P32418	973 aa		5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	IFFO1	Q0D2I5	559 aa		5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	GRIK3	Q13003	919 aa		5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	MTA1	Q13330	715 aa		5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	BIRC2	Q13490	618 aa		5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	DCTN1	Q14203	1278 aa		5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	LRRC14	Q15048	493 aa		5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	PPP2R5A	Q15172	486 aa		5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	CCDC38	Q502W7	563 aa		5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	WLS	Q5T9L3	541 aa		5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	FAM43B	Q6ZT52	329 aa	Predicted RBP	5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	SDCCAG8	Q86SQ7	713 aa	Predicted RBP	5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	HID1	Q8IV36	788 aa		5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	TMEM57	Q8N5G2	664 aa		5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	PRPF38A	Q8NAV1	312 aa	Known RBP	5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	PDZD8	Q8NEN9	1154 aa		5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	STK31	Q9BXU1	1019 aa		5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	RBCK1	Q9BYM8	510 aa		5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	KRTAP9-8	Q9BYQ0	159 aa		5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	TMX1	Q9H3N1	280 aa		5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	ZNF552	Q9H707	407 aa	Predicted RBP	5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	MCM8	Q9UJA3	840 aa		5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	RAB21	Q9UL25	225 aa		5.34	□□□□□ -1.55
PTCD3-212	ENST00000477520	ANKRD26	Q9UPS8	1709 aa		5.34	□□□□□ -1.56
PTCD3-212	ENST00000477520	MED1	Q15648	1581 aa	Predicted RBP	5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	OVOS2	A0A0J9YW53	1432 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	OVOS2	Q6IE36	1432 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	AOX1	Q06278	1338 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	TEX51	A0A1B0GUA7	166 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	SHTN1	A0MZ66	631 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	OTOL1	A6NHN0	477 aa	Predicted RBP	5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	CCDC69	A6NI79	296 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	COQ9	O75208	318 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	HMMR	O75330	724 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	FSBP	O95073	299 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	CELA3A	P09093	270 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	EZR	P15311	586 aa	Known RBP	5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	TPP2	P29144	1249 aa	Predicted RBP	5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	MAGEA8	P43361	318 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	AMPH	P49418	695 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	CCZ1B	P86790	482 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	CCZ1	P86791	482 aa	Predicted RBP	5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	OS9	Q13438	667 aa	Predicted RBP	5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	SART3	Q15020	963 aa	Known RBP	5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	STX1A	Q16623	288 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	LONRF2	Q1L5Z9	754 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	ZNF385B	Q569K4	471 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	PCNX4	Q63HM2	1172 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	SCARA3	Q6AZY7	606 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	ZNF746	Q6NUN9	644 aa	Predicted RBP	5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	GIMAP6	Q6P9H5	292 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	RSRC2	Q7L4I2	434 aa	Known RBP	5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	ANKRD23	Q86SG2	305 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	CCDC82	Q8N4S0	544 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	GAL3ST3	Q96A11	431 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	ZBTB9	Q96C00	473 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	FAXDC2	Q96IV6	333 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	BPIFA3	Q9BQP9	254 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	PAGR1	Q9BTK6	254 aa		5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	MOV10L1	Q9BXT6	1211 aa	Known RBP	5.33	□□□□□ -1.56
PTCD3-212	ENST00000477520	CEP44	Q9C0F1	390 aa		5.33	□□□□□ -1.56

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