RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 PKD2L1Q9P0L9 805 aa14.29□□□□□ -0.12
VPS13D-205ENST00000473099 SLC9A2Q9UBY0 812 aa14.29□□□□□ -0.12
VPS13D-205ENST00000473099 PCDHA10Q9Y5I2 948 aa14.29□□□□□ -0.12
VPS13D-205ENST00000473099 SLC15A5A6NIM6 579 aa14.28□□□□□ -0.12
VPS13D-205ENST00000473099 FAM155AB1AL88 458 aaPredicted RBP14.28□□□□□ -0.12
VPS13D-205ENST00000473099 IGF2BP3O00425 579 aaKnown RBP eCLIP14.28□□□□□ -0.12
VPS13D-205ENST00000473099 PSMA7O14818 248 aa14.28□□□□□ -0.12
VPS13D-205ENST00000473099 ATP9AO75110 1047 aa14.28□□□□□ -0.12
VPS13D-205ENST00000473099 KIF20AO95235 890 aa14.28□□□□□ -0.12
VPS13D-205ENST00000473099 ALDH1A1P00352 501 aa14.28□□□□□ -0.12
VPS13D-205ENST00000473099 PSAPP07602 524 aa14.28□□□□□ -0.12
VPS13D-205ENST00000473099 CYP11B2P19099 503 aa14.28□□□□□ -0.12
VPS13D-205ENST00000473099 TM4SF4P48230 202 aa14.28□□□□□ -0.12
VPS13D-205ENST00000473099 PSMC5P62195 406 aa14.28□□□□□ -0.12
VPS13D-205ENST00000473099 CTTNQ14247 550 aaKnown RBP14.28□□□□□ -0.12
VPS13D-205ENST00000473099 GRB14Q14449 540 aa14.28□□□□□ -0.12
VPS13D-205ENST00000473099 COL13A1Q5TAT6 717 aaPredicted RBP14.28□□□□□ -0.12
VPS13D-205ENST00000473099 PLEKHH3Q7Z736 793 aa14.28□□□□□ -0.12
VPS13D-205ENST00000473099 C4orf19Q8IY42 314 aa14.28□□□□□ -0.12
VPS13D-205ENST00000473099 MSL3Q8N5Y2 521 aaKnown RBP14.28□□□□□ -0.12
VPS13D-205ENST00000473099 ATP6V0A1Q93050 837 aa14.28□□□□□ -0.12
VPS13D-205ENST00000473099 DNAJC19Q96DA6 116 aa14.28□□□□□ -0.12
VPS13D-205ENST00000473099 PPP1R9BQ96SB3 815 aa14.28□□□□□ -0.12
VPS13D-205ENST00000473099 DBR1Q9UK59 544 aaKnown RBP14.28□□□□□ -0.12
VPS13D-205ENST00000473099 SYNRGQ9UMZ2 1314 aa14.27□□□□□ -0.12
VPS13D-205ENST00000473099 PPP1R3GB7ZBB8 358 aa14.27□□□□□ -0.13
VPS13D-205ENST00000473099 TLR2O60603 784 aa14.27□□□□□ -0.13
VPS13D-205ENST00000473099 PGK2P07205 417 aa14.27□□□□□ -0.13
VPS13D-205ENST00000473099 ADORA2AP29274 412 aa14.27□□□□□ -0.13
VPS13D-205ENST00000473099 PAK1Q13153 545 aa14.27□□□□□ -0.13
VPS13D-205ENST00000473099 IRF5Q13568 498 aa14.27□□□□□ -0.13
VPS13D-205ENST00000473099 ZNF792Q3KQV3 632 aa14.27□□□□□ -0.13
VPS13D-205ENST00000473099 MIS18BP1Q6P0N0 1132 aa14.27□□□□□ -0.13
VPS13D-205ENST00000473099 SEPT14Q6ZU15 432 aa14.27□□□□□ -0.13
VPS13D-205ENST00000473099 DYMQ7RTS9 669 aa14.27□□□□□ -0.13
VPS13D-205ENST00000473099 GPR142Q7Z601 462 aa14.27□□□□□ -0.13
VPS13D-205ENST00000473099 DHTKD1Q96HY7 919 aaPredicted RBP14.27□□□□□ -0.13
VPS13D-205ENST00000473099 PDLIM2Q96JY6 352 aa14.27□□□□□ -0.13
VPS13D-205ENST00000473099 FGD4Q96M96 766 aa14.27□□□□□ -0.13
VPS13D-205ENST00000473099 TIPINQ9BVW5 301 aa14.27□□□□□ -0.13
VPS13D-205ENST00000473099 BHMT2Q9H2M3 363 aa14.27□□□□□ -0.13
VPS13D-205ENST00000473099 VTA1Q9NP79 307 aa14.27□□□□□ -0.13
VPS13D-205ENST00000473099 ANKEF1Q9NU02 776 aa14.27□□□□□ -0.13
VPS13D-205ENST00000473099 PANK4Q9NVE7 773 aa14.27□□□□□ -0.13
VPS13D-205ENST00000473099 RWDD2AQ9UIY3 292 aa14.27□□□□□ -0.13
VPS13D-205ENST00000473099 BICDL2A1A5D9 508 aa14.26□□□□□ -0.13
VPS13D-205ENST00000473099 FRMD3A2A2Y4 597 aa14.26□□□□□ -0.13
VPS13D-205ENST00000473099 ARHGEF35A5YM69 484 aa14.26□□□□□ -0.13
VPS13D-205ENST00000473099 IDEP14735 1019 aa14.26□□□□□ -0.13
VPS13D-205ENST00000473099 GAP43P17677 238 aa14.26□□□□□ -0.13
VPS13D-205ENST00000473099 PSMC6P62333 389 aa14.26□□□□□ -0.13
VPS13D-205ENST00000473099 EHHADHQ08426 723 aa14.26□□□□□ -0.13
VPS13D-205ENST00000473099 NOGQ13253 232 aa14.26□□□□□ -0.13
VPS13D-205ENST00000473099 NCAPHQ15003 741 aa14.26□□□□□ -0.13
VPS13D-205ENST00000473099 SPATA1Q5VX52 437 aa14.26□□□□□ -0.13
VPS13D-205ENST00000473099 FOXR2Q6PJQ5 311 aa14.26□□□□□ -0.13
VPS13D-205ENST00000473099 OTUD6AQ7L8S5 288 aa14.26□□□□□ -0.13
VPS13D-205ENST00000473099 TNS4Q8IZW8 715 aa14.26□□□□□ -0.13
VPS13D-205ENST00000473099 ADSSL1Q8N142 457 aa14.26□□□□□ -0.13
VPS13D-205ENST00000473099 BANK1Q8NDB2 785 aa14.26□□□□□ -0.13
VPS13D-205ENST00000473099 CCDC43Q96MW1 224 aaKnown RBP14.26□□□□□ -0.13
VPS13D-205ENST00000473099 SEL1LQ9UBV2 794 aa14.26□□□□□ -0.13
VPS13D-205ENST00000473099 ODF2LQ9ULJ1 636 aa14.26□□□□□ -0.13
VPS13D-205ENST00000473099 TBCAO75347 108 aaKnown RBP14.25□□□□□ -0.13
VPS13D-205ENST00000473099 ATG7O95352 703 aa14.25□□□□□ -0.13
VPS13D-205ENST00000473099 ADCY5O95622 1261 aa14.25□□□□□ -0.13
VPS13D-205ENST00000473099 CCNE2O96020 404 aa14.25□□□□□ -0.13
VPS13D-205ENST00000473099 PRCPP42785 496 aa14.25□□□□□ -0.13
VPS13D-205ENST00000473099 ACTR2P61160 394 aa14.25□□□□□ -0.13
VPS13D-205ENST00000473099 PLCB2Q00722 1185 aa14.25□□□□□ -0.13
VPS13D-205ENST00000473099 COASYQ13057 564 aa14.25□□□□□ -0.13
VPS13D-205ENST00000473099 TTLL4Q14679 1199 aa14.25□□□□□ -0.13
VPS13D-205ENST00000473099 TPD52L1Q16890 204 aaPredicted RBP14.25□□□□□ -0.13
VPS13D-205ENST00000473099 FAM26FQ5R3K3 315 aa14.25□□□□□ -0.13
VPS13D-205ENST00000473099 RINT1Q6NUQ1 792 aa14.25□□□□□ -0.13
VPS13D-205ENST00000473099 C17orf99Q6UX52 265 aa14.25□□□□□ -0.13
VPS13D-205ENST00000473099 MAMDC4Q6UXC1 1216 aa14.25□□□□□ -0.13
VPS13D-205ENST00000473099 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.25□□□□□ -0.13
VPS13D-205ENST00000473099 DPP9Q86TI2 863 aa14.25□□□□□ -0.13
VPS13D-205ENST00000473099 GUF1Q8N442 669 aaKnown RBP14.25□□□□□ -0.13
VPS13D-205ENST00000473099 SCFD2Q8WU76 684 aa14.25□□□□□ -0.13
VPS13D-205ENST00000473099 TRIM5Q9C035 493 aa14.25□□□□□ -0.13
VPS13D-205ENST00000473099 COL4A3BPQ9Y5P4 624 aa14.25□□□□□ -0.13
VPS13D-205ENST00000473099 SYNGAP1Q96PV0 1343 aa14.24□□□□□ -0.13
VPS13D-205ENST00000473099 CBFA2T2O43439 604 aa14.24□□□□□ -0.13
VPS13D-205ENST00000473099 CA12O43570 354 aa14.24□□□□□ -0.13
VPS13D-205ENST00000473099 SUPT20HL2P0C7V6 817 aa14.24□□□□□ -0.13
VPS13D-205ENST00000473099 CD44P16070 742 aaKnown RBP14.24□□□□□ -0.13
VPS13D-205ENST00000473099 UBA1P22314 1058 aaKnown RBP14.24□□□□□ -0.13
VPS13D-205ENST00000473099 GUCY2CP25092 1073 aa14.24□□□□□ -0.13
VPS13D-205ENST00000473099 GIT2Q14161 759 aa14.24□□□□□ -0.13
VPS13D-205ENST00000473099 DEFB115Q30KQ5 88 aa14.24□□□□□ -0.13
VPS13D-205ENST00000473099 ARSHQ5FYA8 562 aa14.24□□□□□ -0.13
VPS13D-205ENST00000473099 KLHL10Q6JEL2 608 aa14.24□□□□□ -0.13
VPS13D-205ENST00000473099 METTL7BQ6UX53 244 aa14.24□□□□□ -0.13
VPS13D-205ENST00000473099 ABHD15Q6UXT9 468 aa14.24□□□□□ -0.13
VPS13D-205ENST00000473099 C1orf186Q6ZWK4 172 aa14.24□□□□□ -0.13
VPS13D-205ENST00000473099 ARMCX2Q7L311 632 aa14.24□□□□□ -0.13
VPS13D-205ENST00000473099 SMYD4Q8IYR2 804 aaPredicted RBP14.24□□□□□ -0.13
VPS13D-205ENST00000473099 PIGOQ8TEQ8 1089 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms