RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 TESK2Q96S53 571 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 TARS2Q9BW92 718 aaKnown RBP5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 DNAI2Q9GZS0 605 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 TNMDQ9H2S6 317 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 TMEM39AQ9NV64 488 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 SEPT10Q9P0V9 454 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 ZNF69Q9UC07 566 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 TAGLN3Q9UI15 199 aa5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 NOSIPQ9Y314 301 aaKnown RBP5.38□□□□□ -1.55
CCDC88A-209ENST00000456975 ITSN1Q15811 1721 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 SOS1Q07889 1333 aaPredicted RBP5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 QRICH2Q9H0J4 1663 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 ATP7BP35670 1465 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 PRRT4C9JH25 899 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 J3QW42 95 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 CLASP2O75122 1294 aaKnown RBP5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 NFKB1P19838 968 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 CCNHP51946 323 aaPredicted RBP5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 HDAC4P56524 1084 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 CCDC152Q4G0S7 254 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 MUM1L1Q5H9M0 696 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 TMEM67Q5HYA8 995 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 ZC3H12BQ5HYM0 836 aaKnown RBP5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 GALNT17Q6IS24 598 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 CNNM4Q6P4Q7 775 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 ADAMTSL4Q6UY14 1074 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 SEPT14Q6ZU15 432 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 HFE2Q6ZVN8 426 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 CATSPER4Q7RTX7 472 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 RASSF3Q86WH2 238 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 RBBP8NLQ8NC74 664 aaPredicted RBP5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 OR6P1Q8NGX9 317 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 SLC16A10Q8TF71 515 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 RSAD2Q8WXG1 361 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 GAL3ST3Q96A11 431 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 E2F7Q96AV8 911 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 PNMA5Q96PV4 448 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 ALPK1Q96QP1 1244 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 SPATA9Q9BWV2 254 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 ASPSCR1Q9BZE9 553 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 TCF7L2Q9NQB0 619 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 FAM86C1Q9NVL1 165 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 LUZP4Q9P127 313 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 HCN2Q9UL51 889 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 CNPY2Q9Y2B0 182 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 LUC7L2Q9Y383 392 aaKnown RBP5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 LRRC37A3O60309 1634 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 PEAK1Q9H792 1746 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 LTBP3Q9NS15 1303 aa5.37□□□□□ -1.55
CCDC88A-209ENST00000456975 DCDC2BA2VCK2 349 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 M0QX08 132 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 MYO1CO00159 1063 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 SPINT1O43278 529 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 TBCAO75347 108 aaKnown RBP5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 ZBTB7AO95365 584 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 TPM1P09493 284 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 ACRP10323 421 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 HSPA4P34932 840 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 POLR2FP61218 127 aaKnown RBP5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 ATP11AP98196 1134 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 MLLT1Q03111 559 aaPredicted RBP5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 CCINQ13939 588 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 ACAP1Q15027 740 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 HYIQ5T013 277 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 PLBD1Q6P4A8 553 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 CCDC186Q7Z3E2 898 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 SPATA21Q7Z572 469 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 FAM114A1Q8IWE2 563 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 TNIP2Q8NFZ5 429 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 BRSK1Q8TDC3 778 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 DNAAF4Q8WXU2 420 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 NXPE3Q969Y0 559 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 EXOC2Q96KP1 924 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 PDRG1Q9NUG6 133 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 PIH1D1Q9NWS0 290 aaKnown RBP5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 NOB1Q9ULX3 412 aaKnown RBP5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 CORINQ9Y5Q5 1042 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 EVC2Q86UK5 1308 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 ST20-MTHFSA0A0A6YYL1 179 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 PRPF3O43395 683 aaKnown RBP5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 STAM2O75886 525 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 GZMAP12544 262 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 RAC2P15153 192 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 SKIV2L2P42285 1042 aaKnown RBP5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 CLCN2P51788 898 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 EPHB1P54762 984 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 MTMR1Q13613 665 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 SLC10A6Q3KNW5 377 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 TTC31Q49AM3 519 aaPredicted RBP5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 FAM209AQ5JX71 171 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 C6orf118Q5T5N4 469 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 CFAP161Q6P656 301 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 VHLLQ6RSH7 139 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 EEPD1Q7L9B9 569 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 TEX11Q8IYF3 940 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 OR8H2Q8N162 312 aa5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 ZBTB38Q8NAP3 1195 aaPredicted RBP5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 PPHLN1Q8NEY8 458 aaKnown RBP5.36□□□□□ -1.55
CCDC88A-209ENST00000456975 RELTQ969Z4 430 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms