RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 HYAL3O43820 417 aaPredicted RBP3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 PHACTR2O75167 634 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 TIMP1P01033 207 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 KRT18P05783 430 aaKnown RBP3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 COL6A2P12110 1019 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 CTSEP14091 401 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 PCSK6P29122 969 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 CSTF2P33240 577 aaKnown RBP eCLIP3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 MCAMP43121 646 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 CCR10P46092 362 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 ZXDAP98168 799 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 CDK18Q07002 472 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 KEAP1Q14145 624 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 ODF2Q5BJF6 829 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 ARHGEF16Q5VV41 709 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 IQSEC1Q6DN90 963 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 ANO7Q6IWH7 933 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 MTFR2Q6P444 385 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 CPLX2Q6PUV4 134 aaKnown RBP3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 NXPE1Q8N323 547 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 CAPSLQ8WWF8 208 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 PRR11Q96HE9 360 aaPredicted RBP3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 MMS19Q96T76 1030 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 LRTM1Q9HBL6 345 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 RABGAP1Q9Y3P9 1069 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 PCDHGC4Q9Y5F7 938 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 PHLPP2Q6ZVD8 1323 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 ZNF644Q9H582 1327 aaPredicted RBP3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 KIF24Q5T7B8 1368 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 NFKBIEO00221 500 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 NFKBIAP25963 317 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 CENPCQ03188 943 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 IFRD2Q12894 506 aaPredicted RBP3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 PTGISQ16647 500 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 C9orf50Q5SZB4 431 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 LYSMD4Q5XG99 296 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 NAA16Q6N069 864 aaPredicted RBP3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 ARMC6Q6NXE6 501 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 ACOT1Q86TX2 421 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 NLRX1Q86UT6 975 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 SMAP1Q8IYB5 467 aaPredicted RBP3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 CEP76Q8TAP6 659 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 MRPS31Q92665 395 aaKnown RBP3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 GTPBP3Q969Y2 492 aaKnown RBP3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 CENPTQ96BT3 561 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 CLMNQ96JQ2 1002 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 CDCA3Q99618 268 aaPredicted RBP3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 COLEC11Q9BWP8 271 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 KRTAP17-1Q9BYP8 105 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 PBX4Q9BYU1 374 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 FAM124BQ9H5Z6 455 aaPredicted RBP3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 LMAN1LQ9HAT1 526 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 ZCCHC17Q9NP64 241 aaKnown RBP3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 MAFBQ9Y5Q3 323 aaPredicted RBP3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 ABCC3O15438 1527 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 CASP8AP2Q9UKL3 1982 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 MAST4O15021 2626 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 UBE4BO95155 1302 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 MINDY4BA8MYZ0 360 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 TMX2-CTNND1H3BSU7 103 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 GAS2O43903 313 aaKnown RBP3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 RPS6KA5O75582 802 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 GDF11O95390 407 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 ASGR2P07307 311 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 SRGNP10124 158 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 CYP2C9P11712 490 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 SPINK2P20155 84 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 PIP4K2AP48426 406 aaPredicted RBP3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 METAP2P50579 478 aaKnown RBP eCLIP3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 MAPK10P53779 464 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 SLC8A3P57103 927 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 FOXO4P98177 505 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 DNM1Q05193 864 aaKnown RBP3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 SCAPQ12770 1279 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 ACAP2Q15057 778 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 ZRSR1Q15695 479 aaKnown RBP3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 STRIP1Q5VSL9 837 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 CCDC30Q5VVM6 783 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 PDE12Q6L8Q7 609 aaKnown RBP3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 HHIPL2Q6UWX4 724 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 TRMT11Q7Z4G4 463 aaKnown RBP3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 TTC7BQ86TV6 843 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 TMEM192Q8IY95 271 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 TMEM158Q8WZ71 300 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 PABPC5Q96DU9 382 aaKnown RBP3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 MRPL38Q96DV4 380 aaKnown RBP3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 GMLQ99445 158 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 GDF15Q99988 308 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 PDCL3Q9H2J4 239 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 TMX2Q9Y320 296 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 PPME1Q9Y570 386 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 PCDHGA2Q9Y5H1 932 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 NCANO14594 1321 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 UNCXA6NJT0 531 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 UBFD1O14562 309 aaKnown RBP3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 LGR5O75473 907 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 DNASE1P24855 282 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 CRKP46108 304 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 DEUP1Q05D60 604 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 TRIM32Q13049 653 aa3.09□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms