RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 KIF5AQ12840 1032 aa13.16□□□□□ -0.3
PTPRN-204ENST00000423636 MAN2A1Q16706 1144 aa13.16□□□□□ -0.3
PTPRN-204ENST00000423636 LONRF2Q1L5Z9 754 aa13.16□□□□□ -0.3
PTPRN-204ENST00000423636 GUF1Q8N442 669 aaKnown RBP13.16□□□□□ -0.3
PTPRN-204ENST00000423636 DCAF4Q8WV16 495 aa13.16□□□□□ -0.3
PTPRN-204ENST00000423636 CCPG1Q9ULG6 757 aa13.16□□□□□ -0.3
PTPRN-204ENST00000423636 PCDHA13Q9Y5I0 950 aa13.16□□□□□ -0.3
PTPRN-204ENST00000423636 ESYT3A0FGR9 886 aa13.16□□□□□ -0.3
PTPRN-204ENST00000423636 CLSTN1O94985 981 aa13.16□□□□□ -0.3
PTPRN-204ENST00000423636 CALCAP01258 141 aa13.16□□□□□ -0.3
PTPRN-204ENST00000423636 MTMR8Q96EF0 704 aa13.16□□□□□ -0.3
PTPRN-204ENST00000423636 CUEDC2Q9H467 287 aa13.16□□□□□ -0.3
PTPRN-204ENST00000423636 PDE11AQ9HCR9 933 aa13.16□□□□□ -0.3
PTPRN-204ENST00000423636 ARFGAP3Q9NP61 516 aa13.16□□□□□ -0.3
PTPRN-204ENST00000423636 ARGLU1Q9NWB6 273 aaPredicted RBP13.16□□□□□ -0.3
PTPRN-204ENST00000423636 RABGAP1Q9Y3P9 1069 aa13.16□□□□□ -0.3
PTPRN-204ENST00000423636 CYLC1P35663 651 aaPredicted RBP13.15□□□□□ -0.3
PTPRN-204ENST00000423636 MUM1L1Q5H9M0 696 aa13.15□□□□□ -0.3
PTPRN-204ENST00000423636 RSRC2Q7L4I2 434 aaKnown RBP13.15□□□□□ -0.3
PTPRN-204ENST00000423636 ADAT2Q7Z6V5 191 aaKnown RBP13.15□□□□□ -0.3
PTPRN-204ENST00000423636 FAM114A1Q8IWE2 563 aa13.15□□□□□ -0.3
PTPRN-204ENST00000423636 ZNF577Q9BSK1 485 aa13.15□□□□□ -0.3
PTPRN-204ENST00000423636 ARHGEF10LQ9HCE6 1279 aa13.15□□□□□ -0.3
PTPRN-204ENST00000423636 ACP6Q9NPH0 428 aa13.15□□□□□ -0.3
PTPRN-204ENST00000423636 GOLGA8IPA6NC78 632 aa13.15□□□□□ -0.3
PTPRN-204ENST00000423636 ZSCAN5CA6NGD5 496 aaPredicted RBP13.15□□□□□ -0.3
PTPRN-204ENST00000423636 GOLGA8JA6NMD2 632 aa13.15□□□□□ -0.3
PTPRN-204ENST00000423636 FLOT1O75955 427 aa13.15□□□□□ -0.3
PTPRN-204ENST00000423636 MYBL2P10244 700 aa13.15□□□□□ -0.3
PTPRN-204ENST00000423636 OAS2P29728 719 aaKnown RBP13.15□□□□□ -0.3
PTPRN-204ENST00000423636 ARHGAP44Q17R89 818 aa13.15□□□□□ -0.3
PTPRN-204ENST00000423636 STYK1Q6J9G0 422 aa13.15□□□□□ -0.3
PTPRN-204ENST00000423636 NIM1KQ8IY84 436 aa13.15□□□□□ -0.3
PTPRN-204ENST00000423636 COL4A5P29400 1685 aa13.15□□□□□ -0.3
PTPRN-204ENST00000423636 TBCAO75347 108 aaKnown RBP13.15□□□□□ -0.31
PTPRN-204ENST00000423636 NOL4O94818 638 aa13.15□□□□□ -0.31
PTPRN-204ENST00000423636 SLITRK3O94933 977 aa13.15□□□□□ -0.31
PTPRN-204ENST00000423636 KCNA3P22001 575 aa13.15□□□□□ -0.31
PTPRN-204ENST00000423636 CCDC102AQ96A19 550 aa13.15□□□□□ -0.31
PTPRN-204ENST00000423636 EHD4Q9H223 541 aa13.15□□□□□ -0.31
PTPRN-204ENST00000423636 SAR1BQ9Y6B6 198 aa13.15□□□□□ -0.31
PTPRN-204ENST00000423636 MORC2Q9Y6X9 1032 aaPredicted RBP13.15□□□□□ -0.31
PTPRN-204ENST00000423636 PLIN4Q96Q06 1357 aa13.14□□□□□ -0.31
PTPRN-204ENST00000423636 A0A087X0T9 212 aa13.14□□□□□ -0.31
PTPRN-204ENST00000423636 H3BQF6 201 aa13.14□□□□□ -0.31
PTPRN-204ENST00000423636 GCOM1H8Y6P7 765 aaPredicted RBP13.14□□□□□ -0.31
PTPRN-204ENST00000423636 FAM228BP0C875 321 aa13.14□□□□□ -0.31
PTPRN-204ENST00000423636 POLR2MP0CAP2 368 aa13.14□□□□□ -0.31
PTPRN-204ENST00000423636 SMARCA1P28370 1054 aa13.14□□□□□ -0.31
PTPRN-204ENST00000423636 MTMR2Q13614 643 aa13.14□□□□□ -0.31
PTPRN-204ENST00000423636 NBPF12Q5TAG4 269 aaPredicted RBP13.14□□□□□ -0.31
PTPRN-204ENST00000423636 SECISBP2LQ93073 1101 aaKnown RBP13.14□□□□□ -0.31
PTPRN-204ENST00000423636 MKL1Q969V6 931 aa13.14□□□□□ -0.31
PTPRN-204ENST00000423636 CAMKK2Q96RR4 588 aa13.14□□□□□ -0.31
PTPRN-204ENST00000423636 UNC45AQ9H3U1 944 aa13.14□□□□□ -0.31
PTPRN-204ENST00000423636 HDAC9Q9UKV0 1011 aa13.14□□□□□ -0.31
PTPRN-204ENST00000423636 PVALEFA0A1B0GWK0 134 aa13.14□□□□□ -0.31
PTPRN-204ENST00000423636 TESPA1A2RU30 521 aaPredicted RBP13.14□□□□□ -0.31
PTPRN-204ENST00000423636 KRT86O43790 486 aa13.14□□□□□ -0.31
PTPRN-204ENST00000423636 FAM13AO94988 1023 aa13.14□□□□□ -0.31
PTPRN-204ENST00000423636 USP8P40818 1118 aa13.14□□□□□ -0.31
PTPRN-204ENST00000423636 NPEPPSP55786 919 aa13.14□□□□□ -0.31
PTPRN-204ENST00000423636 SPP2Q13103 211 aa13.14□□□□□ -0.31
PTPRN-204ENST00000423636 BMS1Q14692 1282 aaKnown RBP13.14□□□□□ -0.31
PTPRN-204ENST00000423636 PLA2G4FQ68DD2 849 aa13.14□□□□□ -0.31
PTPRN-204ENST00000423636 CCDC51Q96ER9 411 aa13.14□□□□□ -0.31
PTPRN-204ENST00000423636 CNTNAP1P78357 1384 aa13.13□□□□□ -0.31
PTPRN-204ENST00000423636 A0A1W2PQC6 194 aa13.13□□□□□ -0.31
PTPRN-204ENST00000423636 USO1O60763 962 aaKnown RBP13.13□□□□□ -0.31
PTPRN-204ENST00000423636 NOP2P46087 812 aaKnown RBP13.13□□□□□ -0.31
PTPRN-204ENST00000423636 FLAD1Q8NFF5 587 aa13.13□□□□□ -0.31
PTPRN-204ENST00000423636 SPAG5Q96R06 1193 aa13.13□□□□□ -0.31
PTPRN-204ENST00000423636 PCDHA2Q9Y5H9 948 aa13.13□□□□□ -0.31
PTPRN-204ENST00000423636 ITGB5P18084 799 aa13.13□□□□□ -0.31
PTPRN-204ENST00000423636 ABCB4P21439 1286 aa13.13□□□□□ -0.31
PTPRN-204ENST00000423636 TRADDQ15628 312 aa13.13□□□□□ -0.31
PTPRN-204ENST00000423636 RINT1Q6NUQ1 792 aa13.13□□□□□ -0.31
PTPRN-204ENST00000423636 PHLDB2Q86SQ0 1253 aa13.13□□□□□ -0.31
PTPRN-204ENST00000423636 BAP1Q92560 729 aa13.13□□□□□ -0.31
PTPRN-204ENST00000423636 NT5C3AQ9H0P0 336 aa13.13□□□□□ -0.31
PTPRN-204ENST00000423636 KCTD10Q9H3F6 313 aa13.13□□□□□ -0.31
PTPRN-204ENST00000423636 HAUS4Q9H6D7 363 aa13.13□□□□□ -0.31
PTPRN-204ENST00000423636 RIPK3Q9Y572 518 aa13.13□□□□□ -0.31
PTPRN-204ENST00000423636 ZNF831Q5JPB2 1677 aa13.13□□□□□ -0.31
PTPRN-204ENST00000423636 EHHADHQ08426 723 aa13.13□□□□□ -0.31
PTPRN-204ENST00000423636 TRIM14Q14142 442 aa13.13□□□□□ -0.31
PTPRN-204ENST00000423636 SMC1AQ14683 1233 aaKnown RBP13.13□□□□□ -0.31
PTPRN-204ENST00000423636 DNAJC21Q5F1R6 531 aaKnown RBP13.13□□□□□ -0.31
PTPRN-204ENST00000423636 CT47A1Q5JQC4 288 aaPredicted RBP13.13□□□□□ -0.31
PTPRN-204ENST00000423636 ODR4Q5SWX8 454 aa13.13□□□□□ -0.31
PTPRN-204ENST00000423636 VAV3Q9UKW4 847 aa13.13□□□□□ -0.31
PTPRN-204ENST00000423636 CETN3O15182 167 aa13.12□□□□□ -0.31
PTPRN-204ENST00000423636 ATP9AO75110 1047 aa13.12□□□□□ -0.31
PTPRN-204ENST00000423636 GFPT2O94808 682 aa13.12□□□□□ -0.31
PTPRN-204ENST00000423636 KLRC1P26715 233 aa13.12□□□□□ -0.31
PTPRN-204ENST00000423636 SSTR3P32745 418 aaPredicted RBP13.12□□□□□ -0.31
PTPRN-204ENST00000423636 USP11P51784 963 aa13.12□□□□□ -0.31
PTPRN-204ENST00000423636 KLHL30Q0D2K2 578 aa13.12□□□□□ -0.31
PTPRN-204ENST00000423636 SYCP3Q8IZU3 236 aa13.12□□□□□ -0.31
PTPRN-204ENST00000423636 GPR161Q8N6U8 529 aaKnown RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms