RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 KLHL24Q6TFL4 600 aa14.27□□□□□ -0.12
CCDC88A-204ENST00000413716 PARP9Q8IXQ6 854 aa14.27□□□□□ -0.12
CCDC88A-204ENST00000413716 TMEM161AQ9NX61 479 aa14.27□□□□□ -0.12
CCDC88A-204ENST00000413716 S100A9P06702 114 aaKnown RBP14.27□□□□□ -0.12
CCDC88A-204ENST00000413716 ANXA13P27216 316 aa14.27□□□□□ -0.12
CCDC88A-204ENST00000413716 POTEEQ6S8J3 1075 aa14.27□□□□□ -0.12
CCDC88A-204ENST00000413716 ANKS3Q6ZW76 656 aa14.27□□□□□ -0.12
CCDC88A-204ENST00000413716 ANKRD44Q8N8A2 993 aa14.27□□□□□ -0.12
CCDC88A-204ENST00000413716 DMAP1Q9NPF5 467 aaPredicted RBP14.27□□□□□ -0.12
CCDC88A-204ENST00000413716 CDC23Q9UJX2 597 aa14.27□□□□□ -0.12
CCDC88A-204ENST00000413716 ZNF653Q96CK0 615 aa14.27□□□□□ -0.12
CCDC88A-204ENST00000413716 UTP6Q9NYH9 597 aaKnown RBP14.27□□□□□ -0.12
CCDC88A-204ENST00000413716 RNF14Q9UBS8 474 aa14.27□□□□□ -0.12
CCDC88A-204ENST00000413716 CALN1Q9BXU9 219 aa14.27□□□□□ -0.13
CCDC88A-204ENST00000413716 MAGEF1Q9HAY2 307 aa14.27□□□□□ -0.13
CCDC88A-204ENST00000413716 UBAP1Q9NZ09 502 aa14.27□□□□□ -0.13
CCDC88A-204ENST00000413716 UNC13AQ9UPW8 1703 aa14.27□□□□□ -0.13
CCDC88A-204ENST00000413716 CFAP73A6NFT4 308 aa14.27□□□□□ -0.13
CCDC88A-204ENST00000413716 RALBP11234 206 aa14.27□□□□□ -0.13
CCDC88A-204ENST00000413716 CDC25BP30305 580 aa14.27□□□□□ -0.13
CCDC88A-204ENST00000413716 BEND6Q5SZJ8 279 aaPredicted RBP14.27□□□□□ -0.13
CCDC88A-204ENST00000413716 SLC30A9Q6PML9 568 aa14.27□□□□□ -0.13
CCDC88A-204ENST00000413716 ZNF644Q9H582 1327 aaPredicted RBP14.27□□□□□ -0.13
CCDC88A-204ENST00000413716 TEX28O15482 410 aa14.27□□□□□ -0.13
CCDC88A-204ENST00000413716 TBC1D10BQ4KMP7 808 aaPredicted RBP14.27□□□□□ -0.13
CCDC88A-204ENST00000413716 OMA1Q96E52 524 aa14.27□□□□□ -0.13
CCDC88A-204ENST00000413716 EFCAB5A4FU69 1503 aa14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 CFBP00751 764 aa14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 FBXO18Q8NFZ0 1043 aa14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 XAGE3Q8WTP9 111 aa14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 ULK4Q96C45 1275 aa14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 FANCEQ9HB96 536 aa14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 AIPL1Q9NZN9 384 aa14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 TROQ12816 1431 aaPredicted RBP14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 ITSN2Q9NZM3 1697 aa14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 E5RI56 91 aa14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 ABI1Q8IZP0 508 aa14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 CUL3Q13618 768 aa14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 MAPRE2Q15555 327 aa14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 KIAA1468Q9P260 1216 aa14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 CTTNBP2Q8WZ74 1663 aa14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 PRPF4O43172 522 aaKnown RBP eCLIP14.26□□□□□ -0.135e-22■□□□□ 10.4
CCDC88A-204ENST00000413716 TFCP2Q12800 502 aa14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 DDX25Q9UHL0 483 aaKnown RBP14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 FAM47CQ5HY64 1035 aa14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 TPTE2Q6XPS3 522 aa14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 ANKRD49Q8WVL7 239 aa14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 ECT2Q9H8V3 914 aa14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 SEC24DO94855 1032 aaPredicted RBP14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 KLHL18O94889 574 aa14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 ATP8B2P98198 1209 aa14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 KRT6AP02538 564 aa14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 KRT6BP04259 564 aa14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 KRT6CP48668 564 aa14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 ETF1P62495 437 aaKnown RBP14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 DNAJC24Q6P3W2 148 aa14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 WDR48Q8TAF3 677 aa14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 KCNV2Q8TDN2 545 aa14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 MEIS3Q99687 375 aa14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 AURKCQ9UQB9 309 aa14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 FAM32AQ9Y421 112 aaKnown RBP14.26□□□□□ -0.13
CCDC88A-204ENST00000413716 KRT38O76015 456 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 INPP5FQ9Y2H2 1132 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 M0R3G1 203 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 SLC27A2O14975 620 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 ZBED1O96006 694 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 DIS3L2Q8IYB7 885 aaKnown RBP14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 PRPF18Q99633 342 aaKnown RBP14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 ARHGEF37A1IGU5 675 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 ZNF500O60304 480 aaPredicted RBP14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 RAD23BP54727 409 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 RASSF3Q86WH2 238 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 KRT73Q86Y46 540 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 TEX2Q8IWB9 1127 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 SMARCAD1Q9H4L7 1026 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 RGL1Q9NZL6 768 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 COL4A3BPQ9Y5P4 624 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 CCDC195A0A1B0GUA6 201 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 TRIM16LQ309B1 348 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 RNF219Q5W0B1 726 aaPredicted RBP14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 IYDQ6PHW0 289 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 KRT26Q7Z3Y9 468 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 MTERF3Q96E29 417 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 PLEKHA8Q96JA3 519 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 BBS2Q9BXC9 721 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 GCNT4Q9P109 453 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 C5orf58C9J3I9 102 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 KRT16P08779 473 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 CDC27P30260 824 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 TTC17Q96AE7 1141 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 RASA4BC9J798 803 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 RASA4O43374 803 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 CEP95Q96GE4 821 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 CLK1P49759 484 aaKnown RBP14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 TFDP1Q14186 410 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 ARMCX5Q6P1M9 558 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 H2AFY2Q9P0M6 372 aaPredicted RBP14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 JAG2Q9Y219 1238 aa14.25□□□□□ -0.13
CCDC88A-204ENST00000413716 GOLGA8MH3BSY2 632 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms